The Complete Mitochondrial Genome and Phylogenetic Analysis of Rhagastis binoculata (Matsumura, 1909) (Lepidoptera: Sphingidae)

The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of R. binoculata is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-ri...

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Published inGenes Vol. 15; no. 9; p. 1171
Main Authors Kuo, Yu-Yun, Chang, Ju-Chun, Li, Yi-Hsuan, Huang, Yu-Feng, Wu, Tzong-Yuan, Nai, Yu-Shin
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 06.09.2024
MDPI
Subjects
Animals
Base Composition - genetics
Butterflies & moths
Codons
Endemic species
Genes
Genetic testing
Genome, Mitochondrial - genetics
Genomes
Genomic analysis
Genomics
Infections
Lepidoptera - classification
Lepidoptera - genetics
Males
mitochondrial genome
moths
Moths - classification
Moths - genetics
Phylogenetics
Phylogeny
Proteins
Raja binoculata
ribosomal RNA
RNA, Ribosomal - genetics
RNA, Transfer - genetics
rRNA
species
Sphingidae
stop codon
subfamily
Taiwan
transfer RNA
Taiwan
Macroglossinae
Sphingidae
Rhagastis binoculata
mitogenome
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Abstract The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of R. binoculata is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-rich control region. The mitogenome has an overall nucleotide composition of 41.2% A, 11.9% C, 7.5% G, and 39.4% T, with an AT content of 80.6%. Of the protein-coding genes (PCGs), 12 start with ATG, ATT, and ATC, and COX1 starts with a “CGA” codon. All of the stop codons are “TAA, TAG, or T”. Our phylogenetic analysis of 21 species of Sphingidae insects suggests that R. binoculata is clustered with Rhagastis mongoliana, which belongs to the subfamily Macroglossinae.
AbstractList The mitochondrial genome (mitogenome) (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-rich control region. The mitogenome has an overall nucleotide composition of 41.2% A, 11.9% C, 7.5% G, and 39.4% T, with an AT content of 80.6%. Of the protein-coding genes (PCGs), 12 start with ATG, ATT, and ATC, and starts with a "CGA" codon. All of the stop codons are "TAA, TAG, or T". Our phylogenetic analysis of 21 species of Sphingidae insects suggests that is clustered with , which belongs to the subfamily Macroglossinae.
The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of R. binoculata is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-rich control region. The mitogenome has an overall nucleotide composition of 41.2% A, 11.9% C, 7.5% G, and 39.4% T, with an AT content of 80.6%. Of the protein-coding genes (PCGs), 12 start with ATG, ATT, and ATC, and COX1 starts with a "CGA" codon. All of the stop codons are "TAA, TAG, or T". Our phylogenetic analysis of 21 species of Sphingidae insects suggests that R. binoculata is clustered with Rhagastis mongoliana, which belongs to the subfamily Macroglossinae.The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of R. binoculata is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-rich control region. The mitogenome has an overall nucleotide composition of 41.2% A, 11.9% C, 7.5% G, and 39.4% T, with an AT content of 80.6%. Of the protein-coding genes (PCGs), 12 start with ATG, ATT, and ATC, and COX1 starts with a "CGA" codon. All of the stop codons are "TAA, TAG, or T". Our phylogenetic analysis of 21 species of Sphingidae insects suggests that R. binoculata is clustered with Rhagastis mongoliana, which belongs to the subfamily Macroglossinae.
The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of R. binoculata is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-rich control region. The mitogenome has an overall nucleotide composition of 41.2% A, 11.9% C, 7.5% G, and 39.4% T, with an AT content of 80.6%. Of the protein-coding genes (PCGs), 12 start with ATG, ATT, and ATC, and COX1 starts with a “CGA” codon. All of the stop codons are “TAA, TAG, or T”. Our phylogenetic analysis of 21 species of Sphingidae insects suggests that R. binoculata is clustered with Rhagastis mongoliana, which belongs to the subfamily Macroglossinae.
The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of R. binoculata is 15,303 bp and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and an AT-rich control region. The mitogenome has an overall nucleotide composition of 41.2% A, 11.9% C, 7.5% G, and 39.4% T, with an AT content of 80.6%. Of the protein-coding genes (PCGs), 12 start with ATG, ATT, and ATC, and COX1 starts with a “CGA” codon. All of the stop codons are “TAA, TAG, or T”. Our phylogenetic analysis of 21 species of Sphingidae insects suggests that R. binoculata is clustered with Rhagastis mongoliana , which belongs to the subfamily Macroglossinae.
Audience Academic
Author Huang, Yu-Feng
Chang, Ju-Chun
Nai, Yu-Shin
Wu, Tzong-Yuan
Kuo, Yu-Yun
Li, Yi-Hsuan
AuthorAffiliation 3 Department of Bioscience Technology, College of Science, Chung Yuan Christian University, Zhongli District, Taoyuan City 32023, Taiwan
2 Doctoral Program in Microbial Genomics, National Chung Hsing University and Academia Sinica, Taichung City 402202, Taiwan
1 Department of Entomology, National Chung Hsing University, Taichung City 40227, Taiwan; yunhallo113gif@gmail.com (Y.-Y.K.); c1887g@email.nchu.edu.tw (J.-C.C.); lisa19980923@gmail.com (Y.-H.L.); yfhuang@csie.ntu.edu.tw (Y.-F.H.)
AuthorAffiliation_xml – name: 2 Doctoral Program in Microbial Genomics, National Chung Hsing University and Academia Sinica, Taichung City 402202, Taiwan
– name: 3 Department of Bioscience Technology, College of Science, Chung Yuan Christian University, Zhongli District, Taoyuan City 32023, Taiwan
– name: 1 Department of Entomology, National Chung Hsing University, Taichung City 40227, Taiwan; yunhallo113gif@gmail.com (Y.-Y.K.); c1887g@email.nchu.edu.tw (J.-C.C.); lisa19980923@gmail.com (Y.-H.L.); yfhuang@csie.ntu.edu.tw (Y.-F.H.)
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Keywords Macroglossinae
Sphingidae
Rhagastis binoculata
mitogenome
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Snippet The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete...
The mitochondrial genome (mitogenome) (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete circular mitogenome of is...
The mitochondrial genome (mitogenome) Rhagastis binoculata (Matsumura, 1909), an endemic moth species in Taiwan, was sequenced and analyzed. The complete...
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proquest
gale
pubmed
crossref
SourceType Open Access Repository
Aggregation Database
Index Database
StartPage 1171
SubjectTerms Animals
Base Composition - genetics
Butterflies & moths
Codons
Endemic species
Genes
Genetic testing
Genome, Mitochondrial - genetics
Genomes
Genomic analysis
Genomics
Infections
Lepidoptera - classification
Lepidoptera - genetics
Males
mitochondrial genome
moths
Moths - classification
Moths - genetics
Phylogenetics
Phylogeny
Proteins
Raja binoculata
ribosomal RNA
RNA, Ribosomal - genetics
RNA, Transfer - genetics
rRNA
species
Sphingidae
stop codon
subfamily
Taiwan
transfer RNA
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Title The Complete Mitochondrial Genome and Phylogenetic Analysis of Rhagastis binoculata (Matsumura, 1909) (Lepidoptera: Sphingidae)
URI https://www.ncbi.nlm.nih.gov/pubmed/39336762
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https://pubmed.ncbi.nlm.nih.gov/PMC11430935
Volume 15
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