Association of epidermal growth factor receptor gene polymorphisms with advanced endometriosis in a Korean population
To determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of advanced stage endometriosis in a Korean population. Case–control study in a collective of 299 women with endometriosis and 285 controls. Three...
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Published in | European journal of obstetrics & gynecology and reproductive biology Vol. 164; no. 2; pp. 196 - 199 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
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Elsevier B.V
01.10.2012
Elsevier Ireland Ltd |
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ISSN | 0301-2115 1872-7654 1872-7654 |
DOI | 10.1016/j.ejogrb.2012.06.004 |
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Abstract | To determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of advanced stage endometriosis in a Korean population.
Case–control study in a collective of 299 women with endometriosis and 285 controls. Three polymorphisms (151904 A>T [T628T] on exon 16 [rs 17337023], 162093 G>A [Q787Q] on exon 20 [rs 10251977], and 181946 C>T [D994D] on exon 25 [rs 2293347]) were assessed by a Minor Groove Binder (MGB) primer/probe Taqman assay. In-silico haplotypes were deduced using the Haploview (version 3.32) software package.
There were no statistically significant differences in the genotype or haplotype frequencies of the three EGFR polymorphisms between subjects with endometriosis versus the control group. Even when the endometriosis cases were subdivided into stage III and IV based on the ASRM criteria, no statistically significant differences in genotype distribution or haplotype frequencies were observed between the three groups.
Our results suggest that the 151904 A>T, 162093 G>A, and 181946 C>T polymorphisms in the EGFR gene are not associated with advanced stage endometriosis in a Korean population. Our results are in agreement with the results reported by Inagaki et al. |
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AbstractList | To determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of advanced stage endometriosis in a Korean population.
Case-control study in a collective of 299 women with endometriosis and 285 controls. Three polymorphisms (151904 A>T [T628T] on exon 16 [rs 17337023], 162093 G>A [Q787Q] on exon 20 [rs 10251977], and 181946 C>T [D994D] on exon 25 [rs 2293347]) were assessed by a Minor Groove Binder (MGB) primer/probe Taqman assay. In-silico haplotypes were deduced using the Haploview (version 3.32) software package.
There were no statistically significant differences in the genotype or haplotype frequencies of the three EGFR polymorphisms between subjects with endometriosis versus the control group. Even when the endometriosis cases were subdivided into stage III and IV based on the ASRM criteria, no statistically significant differences in genotype distribution or haplotype frequencies were observed between the three groups.
Our results suggest that the 151904 A>T, 162093 G>A, and 181946 C>T polymorphisms in the EGFR gene are not associated with advanced stage endometriosis in a Korean population. Our results are in agreement with the results reported by Inagaki et al. AbstractObjectivesTo determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of advanced stage endometriosis in a Korean population. Study designCase–control study in a collective of 299 women with endometriosis and 285 controls. Three polymorphisms (151904 A > T [T628T] on exon 16 [rs 17337023], 162093 G > A [Q787Q] on exon 20 [rs 10251977], and 181946 C > T [D994D] on exon 25 [rs 2293347]) were assessed by a Minor Groove Binder (MGB) primer/probe Taqman assay. In-silico haplotypes were deduced using the Haploview (version 3.32) software package. ResultsThere were no statistically significant differences in the genotype or haplotype frequencies of the three EGFR polymorphisms between subjects with endometriosis versus the control group. Even when the endometriosis cases were subdivided into stage III and IV based on the ASRM criteria, no statistically significant differences in genotype distribution or haplotype frequencies were observed between the three groups. ConclusionsOur results suggest that the 151904 A > T, 162093 G > A, and 181946 C > T polymorphisms in the EGFR gene are not associated with advanced stage endometriosis in a Korean population. Our results are in agreement with the results reported by Inagaki et al. To determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of advanced stage endometriosis in a Korean population.OBJECTIVESTo determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of advanced stage endometriosis in a Korean population.Case-control study in a collective of 299 women with endometriosis and 285 controls. Three polymorphisms (151904 A>T [T628T] on exon 16 [rs 17337023], 162093 G>A [Q787Q] on exon 20 [rs 10251977], and 181946 C>T [D994D] on exon 25 [rs 2293347]) were assessed by a Minor Groove Binder (MGB) primer/probe Taqman assay. In-silico haplotypes were deduced using the Haploview (version 3.32) software package.STUDY DESIGNCase-control study in a collective of 299 women with endometriosis and 285 controls. Three polymorphisms (151904 A>T [T628T] on exon 16 [rs 17337023], 162093 G>A [Q787Q] on exon 20 [rs 10251977], and 181946 C>T [D994D] on exon 25 [rs 2293347]) were assessed by a Minor Groove Binder (MGB) primer/probe Taqman assay. In-silico haplotypes were deduced using the Haploview (version 3.32) software package.There were no statistically significant differences in the genotype or haplotype frequencies of the three EGFR polymorphisms between subjects with endometriosis versus the control group. Even when the endometriosis cases were subdivided into stage III and IV based on the ASRM criteria, no statistically significant differences in genotype distribution or haplotype frequencies were observed between the three groups.RESULTSThere were no statistically significant differences in the genotype or haplotype frequencies of the three EGFR polymorphisms between subjects with endometriosis versus the control group. Even when the endometriosis cases were subdivided into stage III and IV based on the ASRM criteria, no statistically significant differences in genotype distribution or haplotype frequencies were observed between the three groups.Our results suggest that the 151904 A>T, 162093 G>A, and 181946 C>T polymorphisms in the EGFR gene are not associated with advanced stage endometriosis in a Korean population. Our results are in agreement with the results reported by Inagaki et al.CONCLUSIONSOur results suggest that the 151904 A>T, 162093 G>A, and 181946 C>T polymorphisms in the EGFR gene are not associated with advanced stage endometriosis in a Korean population. Our results are in agreement with the results reported by Inagaki et al. |
Author | Choi, Young Min Moon, Shin Yong Lee, Gyoung Hoon Kim, Jong Mee Shin, Jae Jun Kim, Jung Gu |
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Cites_doi | 10.1080/09513590701521057 10.1016/j.fertnstert.2004.08.032 10.1073/pnas.91.21.10217 10.1093/molehr/7.11.1073 10.1097/01.GIM.0000151839.12032.1A 10.1016/S0014-4827(02)00098-8 10.1093/bioinformatics/bth457 10.1093/humrep/den016 10.1093/nar/21.24.5736 10.1093/humrep/dei146 10.1186/1471-2407-7-199 10.1016/S0015-0282(97)81391-X 10.1016/0753-3322(89)90083-8 10.1159/000131829 10.1111/j.1600-0897.2010.00882.x 10.1053/sonc.2002.35642 |
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neoplasia publication-title: Seminars in Oncology doi: 10.1053/sonc.2002.35642 |
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Snippet | To determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers for the risk of... AbstractObjectivesTo determine if specific single nucleotide polymorphisms (SNPs) in the Epidermal Growth Factor Receptor (EGFR) gene were meaningful markers... |
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SubjectTerms | Adolescent Adult Alleles Case-Control Studies Computational Biology Endometriosis Endometriosis - blood Endometriosis - genetics Endometriosis - metabolism Endometriosis - physiopathology Epidermal growth factor receptor gene Exons Female Gene Frequency Genetic Association Studies Genetic Predisposition to Disease Hospitals, University Humans Obstetrics and Gynecology Polymorphism Polymorphism, Single Nucleotide Receptor, Epidermal Growth Factor - genetics Receptor, Epidermal Growth Factor - metabolism Republic of Korea Severity of Illness Index Young Adult |
Title | Association of epidermal growth factor receptor gene polymorphisms with advanced endometriosis in a Korean population |
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