A preliminary crystallographic analysis of the putative mevalonate diphosphate decarboxylase from Trypanosoma brucei
Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl pyrophosphate, an isoprenoid precursor. A gene predicted to encode the enzyme from Trypanosoma brucei has been cloned, a highly efficient expression...
Saved in:
Published in | Acta crystallographica. Section F, Structural biology and crystallization communications Vol. 61; no. 6; pp. 581 - 584 |
---|---|
Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
5 Abbey Square, Chester, Cheshire CH1 2HU, England
Munksgaard International Publishers
01.06.2005
International Union of Crystallography |
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl pyrophosphate, an isoprenoid precursor. A gene predicted to encode the enzyme from Trypanosoma brucei has been cloned, a highly efficient expression system established and a purification protocol determined. The enzyme gives monoclinic crystals in space group P21, with unit‐cell parameters a = 51.5, b = 168.7, c = 54.9 Å, β = 118.8°. A Matthews coefficient VM of 2.5 Å3 Da−1 corresponds to two monomers, each approximately 42 kDa (385 residues), in the asymmetric unit with 50% solvent content. These crystals are well ordered and data to high resolution have been recorded using synchrotron radiation. |
---|---|
AbstractList | The gene encoding the putative mevalonate diphosphate decarboxylase, an enzyme from the mevalonate pathway of isoprenoid precursor biosynthesis, has been cloned from T. brucei. Recombinant protein has been expressed, purified and highly ordered crystals obtained and characterized to aid the structure–function analysis of this enzyme. Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl pyrophosphate, an isoprenoid precursor. A gene predicted to encode the enzyme from Trypanosoma brucei has been cloned, a highly efficient expression system established and a purification protocol determined. The enzyme gives monoclinic crystals in space group P2{sub 1}, with unit-cell parameters a = 51.5, b = 168.7, c = 54.9 Å, β = 118.8°. A Matthews coefficient V{sub M} of 2.5 Å{sup 3} Da{sup −1} corresponds to two monomers, each approximately 42 kDa (385 residues), in the asymmetric unit with 50% solvent content. These crystals are well ordered and data to high resolution have been recorded using synchrotron radiation. Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl pyrophosphate, an isoprenoid precursor. A gene predicted to encode the enzyme from Trypanosoma brucei has been cloned, a highly efficient expression system established and a purification protocol determined. The enzyme gives monoclinic crystals in space group P2(1), with unit-cell parameters a = 51.5, b = 168.7, c = 54.9 A, beta = 118.8 degrees. A Matthews coefficient VM of 2.5 A3 Da(-1) corresponds to two monomers, each approximately 42 kDa (385 residues), in the asymmetric unit with 50% solvent content. These crystals are well ordered and data to high resolution have been recorded using synchrotron radiation. The gene encoding the putative mevalonate diphosphate decarboxylase, an enzyme from the mevalonate pathway of isoprenoid precursor biosynthesis, has been cloned from T. brucei . Recombinant protein has been expressed, purified and highly ordered crystals obtained and characterized to aid the structure–function analysis of this enzyme. Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl pyrophosphate, an isoprenoid precursor. A gene predicted to encode the enzyme from Trypanosoma brucei has been cloned, a highly efficient expression system established and a purification protocol determined. The enzyme gives monoclinic crystals in space group P 2 1 , with unit-cell parameters a = 51.5, b = 168.7, c = 54.9 Å, β = 118.8°. A Matthews coefficient V M of 2.5 Å 3 Da −1 corresponds to two monomers, each approximately 42 kDa (385 residues), in the asymmetric unit with 50% solvent content. These crystals are well ordered and data to high resolution have been recorded using synchrotron radiation. Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl pyrophosphate, an isoprenoid precursor. A gene predicted to encode the enzyme from Trypanosoma brucei has been cloned, a highly efficient expression system established and a purification protocol determined. The enzyme gives monoclinic crystals in space group P21, with unit‐cell parameters a = 51.5, b = 168.7, c = 54.9 Å, β = 118.8°. A Matthews coefficient VM of 2.5 Å3 Da−1 corresponds to two monomers, each approximately 42 kDa (385 residues), in the asymmetric unit with 50% solvent content. These crystals are well ordered and data to high resolution have been recorded using synchrotron radiation. |
Author | Hunter, William N. Martin, David M. A. Byres, Emma |
Author_xml | – sequence: 1 givenname: Emma surname: Byres fullname: Byres, Emma organization: Division of Biological Chemistry and Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland – sequence: 2 givenname: David M. A. surname: Martin fullname: Martin, David M. A. organization: Division of Biological Chemistry and Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland – sequence: 3 givenname: William N. surname: Hunter fullname: Hunter, William N. organization: Division of Biological Chemistry and Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee DD1 5EH, Scotland |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/16511101$$D View this record in MEDLINE/PubMed https://www.osti.gov/biblio/22356024$$D View this record in Osti.gov |
BookMark | eNqFUctuFDEQHKEg8oAP4IIsIXFb8GseviAlgQSkKEgkaIGL1evpzRg89mB7l8zfM8uuQhAHTt2qrqruVh0Wez54LIqnjL5kjNavrlgtpaCK0ZIyWSr5oDjYQLMNtnev3y8OU_pGqRCqah4V-6wq2eTADop8TIaIzvbWQxyJiWPK4Fy4iTB01hDw4MZkEwlLkjskwypDtmskPa7BBQ8ZSWuHLqSh-92jgbgIt6ODhGQZQ0-u4ziADyn0QBZxZdA-Lh4uwSV8sqtHxaezt9en72YXH87fnx5fzIysaTNblLyGpeRUKsG5MAollg1FBWoBWFVSMC4khxahlhWf4KplbUVBmUqyphVHxeut77Ba9Nga9DmC00O0_fSsDmD13xNvO30T1pqpkguuJoPnW4OQstXJ2IymM8F7NFlPJ5UV5XJivditieHHClPWvU0GnQOPYZV0TZkQjeATkW2JJoaUIi7vTmFUbxLV_yQ6aZ7d_-GPYhfhRFBbwk_rcPy_oz7-csZP5iVtmkk722ptynh7p4X4XVe1qEs9vzzXny9l8_HN_Ku-Er8AvPW_5A |
CitedBy_id | crossref_primary_10_1002_cctc_201300881 crossref_primary_10_1016_j_jmb_2007_05_094 |
ContentType | Journal Article |
Copyright | International Union of Crystallography 2005 2005 |
Copyright_xml | – notice: International Union of Crystallography 2005 2005 |
DBID | BSCLL CGR CUY CVF ECM EIF NPM AAYXX CITATION 7X8 OTOTI 5PM |
DOI | 10.1107/S1744309105014594 |
DatabaseName | Istex Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef MEDLINE - Academic OSTI.GOV PubMed Central (Full Participant titles) |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef MEDLINE - Academic |
DatabaseTitleList | MEDLINE - Academic MEDLINE |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Engineering Chemistry |
DocumentTitleAlternate | Mevalonate diphosphate decarboxylase |
EISSN | 1744-3091 |
EndPage | 584 |
ExternalDocumentID | 22356024 10_1107_S1744309105014594 16511101 AYF2BW5088 ark_67375_WNG_XN48RDWZ_S |
Genre | miscellaneous Research Support, Non-U.S. Gov't Journal Article |
GrantInformation_xml | – fundername: Wellcome Trust |
GroupedDBID | --- .3N .GA .Y3 05W 10A 1OC 23M 2WC 31~ 33P 4.4 50Y 50Z 51W 51X 52M 52N 52O 52P 52S 52T 52W 52X 53G 5GY 5HH 5LA 66C 6J9 702 7PT 8-0 8-1 8-3 8-4 8-5 8UM 930 A03 AAEVG AAHHS AANLZ AAONW AAXRX AAZKR ABCQN ABCUV ABEML ABJNI ACAHQ ACBWZ ACCFJ ACCZN ACGFS ACPOU ACSCC ACXBN ACXQS ADBBV ADEOM ADIYS ADIZJ ADMGS ADOZA ADZOD AEEZP AEIGN AEIMD AEQDE AEUQT AEUYR AFBPY AFEBI AFFPM AFGKR AFPWT AFZJQ AHBTC AITYG AIURR AIWBW AJBDE ALAGY ALMA_UNASSIGNED_HOLDINGS ALUQN AMBMR AMYDB AOIJS ASPBG ATUGU AVWKF AZBYB AZFZN BAWUL BDRZF BROTX BRXPI BSCLL BY8 CAG COF CS3 D-E D-F DCZOG DIK DPXWK DR2 DRFUL DRSTM EBS EJD EMB EMOBN F00 F01 F04 F5P FEDTE G-S G.N GODZA HGLYW HH5 HVGLF HYE HZI HZ~ I-F IX1 LATKE LC2 LC3 LEEKS LH4 LITHE LOXES LP6 LP7 LUTES LW6 LYRES MK4 MRFUL MRSTM MSFUL MSSTM MXFUL MXSTM N04 N05 N9A NF~ O9- OIG OK1 P2X P4D Q.N Q11 QB0 R.K RCJ RNS ROL RPM RX1 SUPJJ SV3 TR2 UB1 V8K W8V WIH WIK WOQ WQJ WRC XG1 ~IA ~WT CGR CUY CVF ECM EIF NPM AAYXX CITATION 7X8 0R~ AAPBV ABHUG ABPTK ACXME ADAWD ADDAD AFVGU AGJLS OTOTI 5PM |
ID | FETCH-LOGICAL-c4708-b527af420493223c9e4e580e9a9bae664312342adea74629a96d1d60a9c6418d3 |
IEDL.DBID | RPM |
ISSN | 1744-3091 |
IngestDate | Tue Sep 17 21:19:28 EDT 2024 Thu May 18 18:28:44 EDT 2023 Sat Aug 17 05:29:41 EDT 2024 Fri Aug 23 01:23:45 EDT 2024 Sat Nov 02 11:58:15 EDT 2024 Sat Aug 24 00:52:55 EDT 2024 Wed Oct 30 09:57:15 EDT 2024 |
IsDoiOpenAccess | false |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 6 |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c4708-b527af420493223c9e4e580e9a9bae664312342adea74629a96d1d60a9c6418d3 |
Notes | ArticleID:AYF2BW5088 istex:C91CB75B238C01E170BED0DDF6361818D5E0134C ark:/67375/WNG-XN48RDWZ-S ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PMID | 16511101 |
PQID | 70133832 |
PQPubID | 23479 |
PageCount | 4 |
ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_1952329 osti_scitechconnect_22356024 proquest_miscellaneous_70133832 crossref_primary_10_1107_S1744309105014594 pubmed_primary_16511101 wiley_primary_10_1107_S1744309105014594_AYF2BW5088 istex_primary_ark_67375_WNG_XN48RDWZ_S |
PublicationCentury | 2000 |
PublicationDate | June 2005 |
PublicationDateYYYYMMDD | 2005-06-01 |
PublicationDate_xml | – month: 06 year: 2005 text: June 2005 |
PublicationDecade | 2000 |
PublicationPlace | 5 Abbey Square, Chester, Cheshire CH1 2HU, England |
PublicationPlace_xml | – name: 5 Abbey Square, Chester, Cheshire CH1 2HU, England – name: England – name: United Kingdom |
PublicationTitle | Acta crystallographica. Section F, Structural biology and crystallization communications |
PublicationTitleAlternate | Acta Cryst. F |
PublicationYear | 2005 |
Publisher | Munksgaard International Publishers International Union of Crystallography |
Publisher_xml | – name: Munksgaard International Publishers – name: International Union of Crystallography |
SSID | ssj0033968 |
Score | 1.6279612 |
Snippet | Mevalonate diphosphate decarboxylase catalyses the last and least well characterized step in the mevalonate pathway for the biosynthesis of isopentenyl... The gene encoding the putative mevalonate diphosphate decarboxylase, an enzyme from the mevalonate pathway of isoprenoid precursor biosynthesis, has been... |
SourceID | pubmedcentral osti proquest crossref pubmed wiley istex |
SourceType | Open Access Repository Aggregation Database Index Database Publisher |
StartPage | 581 |
SubjectTerms | Animals Carboxy-Lyases - chemistry Carboxy-Lyases - genetics Carboxy-Lyases - isolation & purification Cloning, Molecular CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY Crystallization Crystallization Communications CRYSTALS decarboxylases isoprenoids mevalonate biosynthesis MONOMERS PRECURSOR Protozoan Proteins - chemistry Protozoan Proteins - genetics Protozoan Proteins - isolation & purification RESOLUTION SOLVENTS SPACE GROUPS SYNCHROTRON RADIATION Trypanosoma Trypanosoma brucei brucei - enzymology X-Ray Diffraction |
SummonAdditionalLinks | – databaseName: Wiley Online Library - Core collection (SURFmarket) dbid: DR2 link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV1Lj9MwELZWywE48FhgCSzgA-KAlCVx7Dg-li5lhUQP-1ALF8t2XLVamkRpKrH8esZOUrYUCQluUeI4GXs883k8_ozQay2yxILjCzM6EyE1EdhBwkiouM00NYYJ40IDn8fp6SX9NGXTPTTs98K0_BCbgJsbGd5euwGudHcKiV_XPwcsTRPn7vzSmHCcoHHCXVrXydmGQipJRLsdDgqHrnS3sgl1vNupYcs33XLN_B0sdQlj7U_4czeN8ia89f5pdB_lvWRtWsrV8brRx-bHb6SP_yn6A3Svw6940CrcQ7RniwN0e9gfG3eA7t5gOHyEmgGuavja0m_7xaa-BjT6rePJXhisOk4UXM4wQFFcrRvPRI6XjobcRfYtzhfVvFxVc39tjao1iAig32K3NwZf1Ndg0cpVuVRYO01dPEaXow8Xw9OwO-ghNJRHWagZ4WpGCcxWwL4kRlhqWRZZoYRWNgXQBP6VEpVbxWlK4Haax3kaKWFSGmd58gTtF2VhnyKsY0sVTJm4SDVlzGS5hveNEUxkeiaiAL3tu1hWLZ-H9POgiMudZg3QG68Em5KqvnKJcJzJyfijnI5pdnYy-SrPA3TktEQCanHUu8blKJlGgiwAKAnU86rXHgm94ZZkVGHL9UryyMcISIAOW1369VMpQGGwlwHiW1q2KeB4wbefFIu55wePBQOcLAJEvBL9XU45-DIi7ycOqz_7l5eeozue0dYHp47QflOv7QvAao1-6QfjTwl4Mwg priority: 102 providerName: Wiley-Blackwell |
Title | A preliminary crystallographic analysis of the putative mevalonate diphosphate decarboxylase from Trypanosoma brucei |
URI | https://api.istex.fr/ark:/67375/WNG-XN48RDWZ-S/fulltext.pdf https://onlinelibrary.wiley.com/doi/abs/10.1107%2FS1744309105014594 https://www.ncbi.nlm.nih.gov/pubmed/16511101 https://search.proquest.com/docview/70133832 https://www.osti.gov/biblio/22356024 https://pubmed.ncbi.nlm.nih.gov/PMC1952329 |
Volume | 61 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3Pb9MwFLa2cQAOCAaMwCg-IA5IWRPHTuxjKZQJaRXaD7VwsWzHVSPaJEpbaf3veXaTsWlISNyixElsv2e_79nP30PovRY8sWD4Qk5nIqQmgnmQMBKqzHJNjWHCuKWBs3F6ekW_Tdl0D7HuLIwP2je6OCkXy5OymPvYynpp-l2cWP_72TAW4D4R0d9H-6CgnYu-m36TRKS83b4E16Z_AZCbJs4q-h004RPxpAAz4jYPTGeLHrhuvYaZuYKx9Te8eT9s8jac9fZo9BQ9aYEkHuwq_Azt2fIQPRx2-dsO0eNbVIPP0XqA68YufA6vZotNswVYuGgJqwuDVUtOgqsZBkyI683aU4LjpeMDd0vsFudFPa9W9dxfW6MaXV1vAX1b7A6p4MtmC1NLtaqWCmunMsULdDX6cjk8DduMC6GhWcRDzUimZpSA2wADPTHCUst4ZIUSWtkU0AsYOkpUblVGUwK30zzO00gJk9KY58lLdFBWpX2FsI4tVeC7ZCLVlDHDcw3vGyOY4HomogB97Ppe1jtiDekdkiiT92QWoA9eOjclVfPLRaRlTE7GX-V0TPn558lPeRGgYyc-CfDBceAaFyxk1hLaAsiOwHfedWKVIA23N6JKW21WMou8s04CdLQT8p9KtcoSoOyO-G8KOILuu09Abz1Rd6unASJeUf7dTjn4MSKfJg40v_7v371Bjzy_rF8qOkYH62Zj3wJyWuse-AznpOesF-v5UfMbHTcX2A |
link.rule.ids | 230,315,730,783,787,888,1378,27936,27937,46306,46730,53804,53806 |
linkProvider | National Library of Medicine |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3db9MwED-N7WHwgGB8BQbzA-IBKWvqOB9-LIVSYK0Q69SyF8t2XLWiTaK0ldb_nrObjE1DQuItSpzE9p19v7PPvwN4q3gaGjR8fsqm3Gc6wHmQRtSXiUkV0zri2i4NDIZx_4J9nUSTPYiaszAuaF-r-Wm-WJ7m85mLrSyXutXEibW-D7ptju4T5a17cIDjNWCNk76bgMOQx2m9gYnOTescQTcLrV10e2jcpeKJEWi060wwjTU6sB17hXNzgaPrb4jzbuDkTUDrLFLvETysoSTp7Kr8GPZMfgSH3SaD2xE8uEE2-ATWHVJWZuGyeFVboqstAsNFTVk910TW9CSkmBJEhaTcrB0pOFlaRnC7yG5INi9nxaqcuWujZaWKqy3ib0PsMRUyqrY4uRSrYimJskozfwoXvU-jbt-vcy74miVB6quIJnLKKDoOONRDzQ0zURoYLrmSJkb8gqaOUZkZmbCY4u04a2dxILmOWTvNwmewnxe5eQFEtQ2T6L0kPFYsinSaKXxfax7xVE154MH7pu9FuaPWEM4lCRJxR2YevHPSuS4pq182Ji2JxHj4WUyGLP3xcXwpzj04tuITCCAsC6624UJ6LbAtiO0ofuekEatAadjdEZmbYrMSSeDcderB852Q_1SqVhYPklvivy5gKbpvP0HNdVTdtaZ6QJ2i_LudovOzRz-MLWx--d-_O4HD_mhwJs6-DL-9gvuObdYtHB3D_rramNeIo9bqjRs1vwHRARlf |
linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3db9MwELdgk_h4QDC-AoP5AfGAlCVxnA8_lo4yPlZNbFM7XizbcdSINonSVFr_e85uMjoNCYm3KHESO3fn-519-R1C7yRLQw2Oz01pzlyqfJgHSURckehUUqUipszSwMk4Pr6gX6fRdKvUl03aV7I4LOeLw7KY2dzKeqG8Pk_MOz0ZBgzCJ8K8Osu9u2gXbNaP-0B9MwmHIYvTbhMTAhzvDIA3DY1vtPtozJbjiQFsBF01mN4j7ZqPewXzcwUW9jfUeTt5chvUWq80eowedXASDzbdfoLu6HIP3R_2Vdz20MMtwsGnqB3gutFzW8mrWWPVrAEczjva6kJh0VGU4CrHgAxxvWotMTheGFZws9CucVbUs2pZz-yxVqKR1dUaMLjG5lcVfN6sYYKpltVCYGkUp3iGLkafzofHbld3wVU08VNXRiQROSUQPIC5h4ppqqPU10wwKXQMGAbcHSUi0yKhMYHTcRZksS-YimmQZuFztFNWpX6JsAw0FRDBJCyWNIpUmkm4XykWsVTmzHfQh_7b83pDr8FtWOIn_JbMHPTeSue6pWh-mby0JOKT8Wc-HdP0x9HkJz9z0L4RHwcQYZhwlUkZUi2HsQC-I_Ccg16sHKRhdkhEqavVkie-DdmJg15shPynU52yOCi5If7rBoam--YV0F5L191pq4OIVZR_j5MPLkfk48RA51f__boDdO_0aMS_fxl_e40eWMJZu3a0j3baZqXfAJRq5VtrNL8B3d0acg |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=A+preliminary+crystallographic+analysis+of+the+putative+mevalonate+diphosphate+decarboxylase+from+Trypanosoma+brucei&rft.jtitle=Acta+crystallographica.+Section+F%2C+Structural+biology+and+crystallization+communications&rft.au=Byres%2C+Emma&rft.au=Martin%2C+David+M+A&rft.au=Hunter%2C+William+N&rft.date=2005-06-01&rft.eissn=1744-3091&rft.volume=61&rft.spage=581&rft.epage=584&rft_id=info:doi/10.1107%2FS1744309105014594&rft.externalDBID=NO_FULL_TEXT |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1744-3091&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1744-3091&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1744-3091&client=summon |