First Report of Distinct Bamboo mosaic virus (BaMV) Isolates Infecting Bambusa funghomii in Vietnam and the Identification of a Highly Variable Region in the BaMV Genome

New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, US...

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Published inViruses Vol. 14; no. 4; p. 698
Main Authors Huang, Ying-Wen, Lee, Chin-Wei, Lin, Na-Sheng, Cuong, Ha Viet, Hu, Chung-Chi, Hsu, Yau-Heiu
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 28.03.2022
MDPI
Subjects
Bamboo mosaic virus
Bambusa
Bambusa - genetics
Cloning
diversity
DNA helicase
Fines & penalties
genetic marker
Genomes
Nicotiana
Orf1 gene
phylogenetic analysis
Phylogenetics
Potexvirus
Potexvirus - genetics
Proteins
Recombination
RNA polymerase
RNA, Viral - genetics
satellite RNA
Variable region
Vietnam
Vietnam
United States > US
diversity
phylogenetic analysis
satellite RNA
Bamboo mosaic virus
Potexvirus
classification
genetic marker
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Abstract New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, USA. Unique satellite RNAs were also found to be associated with the BaMV Vietnam isolates. A possible recombination event was detected in the genome of BaMV-VN2. A highly variable region was identified in the ORF1 gene, in between the methyl transferase domain and helicase domain. These results revealed the presence of unique BaMV isolates in an additional bamboo species in one more country, Vietnam, and provided evidence in support of the possible involvement of environmental or host factors in the diversification and evolution of BaMV.
AbstractList New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, USA. Unique satellite RNAs were also found to be associated with the BaMV Vietnam isolates. A possible recombination event was detected in the genome of BaMV-VN2. A highly variable region was identified in the ORF1 gene, in between the methyl transferase domain and helicase domain. These results revealed the presence of unique BaMV isolates in an additional bamboo species in one more country, Vietnam, and provided evidence in support of the possible involvement of environmental or host factors in the diversification and evolution of BaMV.
New isolates of the (BaMV) were identified in bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, USA. Unique satellite RNAs were also found to be associated with the BaMV Vietnam isolates. A possible recombination event was detected in the genome of BaMV-VN2. A highly variable region was identified in the ORF1 gene, in between the methyl transferase domain and helicase domain. These results revealed the presence of unique BaMV isolates in an additional bamboo species in one more country, Vietnam, and provided evidence in support of the possible involvement of environmental or host factors in the diversification and evolution of BaMV.
New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, USA. Unique satellite RNAs were also found to be associated with the BaMV Vietnam isolates. A possible recombination event was detected in the genome of BaMV-VN2. A highly variable region was identified in the ORF1 gene, in between the methyl transferase domain and helicase domain. These results revealed the presence of unique BaMV isolates in an additional bamboo species in one more country, Vietnam, and provided evidence in support of the possible involvement of environmental or host factors in the diversification and evolution of BaMV.
New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, USA. Unique satellite RNAs were also found to be associated with the BaMV Vietnam isolates. A possible recombination event was detected in the genome of BaMV-VN2. A highly variable region was identified in the ORF1 gene, in between the methyl transferase domain and helicase domain. These results revealed the presence of unique BaMV isolates in an additional bamboo species in one more country, Vietnam, and provided evidence in support of the possible involvement of environmental or host factors in the diversification and evolution of BaMV.New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains, sharing the highest sequence identities (about 77%) with the Yoshi isolates reported in California, USA. Unique satellite RNAs were also found to be associated with the BaMV Vietnam isolates. A possible recombination event was detected in the genome of BaMV-VN2. A highly variable region was identified in the ORF1 gene, in between the methyl transferase domain and helicase domain. These results revealed the presence of unique BaMV isolates in an additional bamboo species in one more country, Vietnam, and provided evidence in support of the possible involvement of environmental or host factors in the diversification and evolution of BaMV.
Author Huang, Ying-Wen
Lee, Chin-Wei
Hsu, Yau-Heiu
Lin, Na-Sheng
Hu, Chung-Chi
Cuong, Ha Viet
AuthorAffiliation 4 Department of Plant Pathology, Research Center for Tropic Plant Diseases, Vietnam National University of Agriculture, Hanoi 100915, Vietnam; hvcuongnh@vnua.edu.vn
1 Graduate Institute of Biotechnology, National Chung Hsing University, 250 Kuo-Kuang Rd, Taichung 40227, Taiwan; ywhuang0101@gmail.com (Y.-W.H.); wei570211@yahoo.com.tw (C.-W.L.)
2 Advanced Plant Biotechnology Center, National Chung Hsing University, Taichung 40227, Taiwan
3 Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan; nslin@gate.sinica.edu.tw
AuthorAffiliation_xml – name: 3 Institute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan; nslin@gate.sinica.edu.tw
– name: 2 Advanced Plant Biotechnology Center, National Chung Hsing University, Taichung 40227, Taiwan
– name: 1 Graduate Institute of Biotechnology, National Chung Hsing University, 250 Kuo-Kuang Rd, Taichung 40227, Taiwan; ywhuang0101@gmail.com (Y.-W.H.); wei570211@yahoo.com.tw (C.-W.L.)
– name: 4 Department of Plant Pathology, Research Center for Tropic Plant Diseases, Vietnam National University of Agriculture, Hanoi 100915, Vietnam; hvcuongnh@vnua.edu.vn
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CitedBy_id crossref_primary_10_3390_v14050864
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Keywords diversity
phylogenetic analysis
satellite RNA
Bamboo mosaic virus
Potexvirus
classification
genetic marker
Language English
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Snippet New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are...
New isolates of the (BaMV) were identified in bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are distinct from all known BaMV strains,...
New isolates of the Bamboo mosaic virus (BaMV) were identified in Bambusa funghomii bamboo in Vietnam. Sequence analyses revealed that the Vietnam isolates are...
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StartPage 698
SubjectTerms Bamboo mosaic virus
Bambusa
Bambusa - genetics
Cloning
diversity
DNA helicase
Fines & penalties
genetic marker
Genomes
Nicotiana
Orf1 gene
phylogenetic analysis
Phylogenetics
Potexvirus
Potexvirus - genetics
Proteins
Recombination
RNA polymerase
RNA, Viral - genetics
satellite RNA
Variable region
Vietnam
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Title First Report of Distinct Bamboo mosaic virus (BaMV) Isolates Infecting Bambusa funghomii in Vietnam and the Identification of a Highly Variable Region in the BaMV Genome
URI https://www.ncbi.nlm.nih.gov/pubmed/35458428
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https://pubmed.ncbi.nlm.nih.gov/PMC9032891
https://doaj.org/article/d5374108333249b0af40e534892e2deb
Volume 14
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