Deciphering the genetic diversity and population structure of wild barley germplasm against corn leaf aphid, Rhopalosiphum maidis (Fitch)

Corn-leaf aphid (CLA- Rhopalosiphum maidis ) is a major insect pest of barley ( Hordeum vulgare ) causing yield loss upto 30% under severe infestation. Keeping in view of the availability of very few sources of CLA resistance in barley, the present investigation was framed to assess the genetic dive...

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Published inScientific reports Vol. 13; no. 1; p. 17313
Main Authors Maanju, Sunny, Jasrotia, Poonam, Yadav, Surender Singh, Kashyap, Prem Lal, Kumar, Sudheer, Jat, Manoj Kumar, Lal, Chuni, Sharma, Preeti, Singh, Gyanendra, Singh, Gyanendra Pratap
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 12.10.2023
Nature Publishing Group
Nature Portfolio
Subjects
631/337
631/61
Alleles
Barley
Bayesian analysis
Corn
Genetic diversity
Genetic markers
Genotypes
Germplasm
Hordeum spontaneum
Hordeum vulgare
Humanities and Social Sciences
Leaves
Microsatellites
multidisciplinary
Pest resistance
Population genetics
Population structure
Population studies
Rhopalosiphum maidis
Science
Science (multidisciplinary)
Statistical methods
Subpopulations
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Abstract Corn-leaf aphid (CLA- Rhopalosiphum maidis ) is a major insect pest of barley ( Hordeum vulgare ) causing yield loss upto 30% under severe infestation. Keeping in view of the availability of very few sources of CLA resistance in barley, the present investigation was framed to assess the genetic diversity and population structure of 43 wild barley ( H. vulgare subsp. spontaneum ) genotypes using eight microsatellite markers against R. maidis . Three statistical methods viz . multivariate-hierarchical clustering, Bayesian clustering and PCoA, unanimously grouped genotypes into three subpopulations (K = 3) with 25.58% (SubPop1-Red), 39.53% (SubPop2-Green) and 34.88% (SubPop3-Blue) genotypes including admixtures. Based on Q ≥ 66.66%, 37.20% genotypes formed a superficial “Mixed/Admixture” subpopulation. All polymorphic SSR markers generated 36 alleles, averaging to 4.5 alleles/locus (2–7 range). The PIC and H were highest in MS31 and lowest in MS28, with averages of 0.66 and 0.71. MAF and mean genetic diversity were 0.16 and 89.28%, respectively. All these parameters indicated the presence of predominant genetic diversity and population structure amongst the studied genotypes. Based on AII, only 6 genotypes were found to be R. maidis resistant. SubPop3 had 91.66% (11) of the resistant or moderately resistant genotypes. SubPop3 also had the most pure genotypes (11), the least aphid infestation (8.78), and the highest GS (0.88), indicating its suitability for future R. maidis resistance breeding initiatives.
AbstractList Corn-leaf aphid (CLA- Rhopalosiphum maidis ) is a major insect pest of barley ( Hordeum vulgare ) causing yield loss upto 30% under severe infestation. Keeping in view of the availability of very few sources of CLA resistance in barley, the present investigation was framed to assess the genetic diversity and population structure of 43 wild barley ( H. vulgare subsp. spontaneum ) genotypes using eight microsatellite markers against R. maidis . Three statistical methods viz . multivariate-hierarchical clustering, Bayesian clustering and PCoA, unanimously grouped genotypes into three subpopulations (K = 3) with 25.58% (SubPop1-Red), 39.53% (SubPop2-Green) and 34.88% (SubPop3-Blue) genotypes including admixtures. Based on Q ≥ 66.66%, 37.20% genotypes formed a superficial “Mixed/Admixture” subpopulation. All polymorphic SSR markers generated 36 alleles, averaging to 4.5 alleles/locus (2–7 range). The PIC and H were highest in MS31 and lowest in MS28, with averages of 0.66 and 0.71. MAF and mean genetic diversity were 0.16 and 89.28%, respectively. All these parameters indicated the presence of predominant genetic diversity and population structure amongst the studied genotypes. Based on AII, only 6 genotypes were found to be R. maidis resistant. SubPop3 had 91.66% (11) of the resistant or moderately resistant genotypes. SubPop3 also had the most pure genotypes (11), the least aphid infestation (8.78), and the highest GS (0.88), indicating its suitability for future R. maidis resistance breeding initiatives.
Abstract Corn-leaf aphid (CLA- Rhopalosiphum maidis ) is a major insect pest of barley ( Hordeum vulgare ) causing yield loss upto 30% under severe infestation. Keeping in view of the availability of very few sources of CLA resistance in barley, the present investigation was framed to assess the genetic diversity and population structure of 43 wild barley ( H. vulgare subsp. spontaneum ) genotypes using eight microsatellite markers against R. maidis . Three statistical methods viz . multivariate-hierarchical clustering, Bayesian clustering and PCoA, unanimously grouped genotypes into three subpopulations (K = 3) with 25.58% (SubPop1-Red), 39.53% (SubPop2-Green) and 34.88% (SubPop3-Blue) genotypes including admixtures. Based on Q ≥ 66.66%, 37.20% genotypes formed a superficial “Mixed/Admixture” subpopulation. All polymorphic SSR markers generated 36 alleles, averaging to 4.5 alleles/locus (2–7 range). The PIC and H were highest in MS31 and lowest in MS28, with averages of 0.66 and 0.71. MAF and mean genetic diversity were 0.16 and 89.28%, respectively. All these parameters indicated the presence of predominant genetic diversity and population structure amongst the studied genotypes. Based on AII, only 6 genotypes were found to be R. maidis resistant. SubPop3 had 91.66% (11) of the resistant or moderately resistant genotypes. SubPop3 also had the most pure genotypes (11), the least aphid infestation (8.78), and the highest GS (0.88), indicating its suitability for future R. maidis resistance breeding initiatives.
Corn-leaf aphid (CLA-Rhopalosiphum maidis) is a major insect pest of barley (Hordeum vulgare) causing yield loss upto 30% under severe infestation. Keeping in view of the availability of very few sources of CLA resistance in barley, the present investigation was framed to assess the genetic diversity and population structure of 43 wild barley (H. vulgare subsp. spontaneum) genotypes using eight microsatellite markers against R. maidis. Three statistical methods viz. multivariate-hierarchical clustering, Bayesian clustering and PCoA, unanimously grouped genotypes into three subpopulations (K = 3) with 25.58% (SubPop1-Red), 39.53% (SubPop2-Green) and 34.88% (SubPop3-Blue) genotypes including admixtures. Based on Q ≥ 66.66%, 37.20% genotypes formed a superficial "Mixed/Admixture" subpopulation. All polymorphic SSR markers generated 36 alleles, averaging to 4.5 alleles/locus (2-7 range). The PIC and H were highest in MS31 and lowest in MS28, with averages of 0.66 and 0.71. MAF and mean genetic diversity were 0.16 and 89.28%, respectively. All these parameters indicated the presence of predominant genetic diversity and population structure amongst the studied genotypes. Based on AII, only 6 genotypes were found to be R. maidis resistant. SubPop3 had 91.66% (11) of the resistant or moderately resistant genotypes. SubPop3 also had the most pure genotypes (11), the least aphid infestation (8.78), and the highest GS (0.88), indicating its suitability for future R. maidis resistance breeding initiatives.
Abstract Corn-leaf aphid (CLA-Rhopalosiphum maidis) is a major insect pest of barley (Hordeum vulgare) causing yield loss upto 30% under severe infestation. Keeping in view of the availability of very few sources of CLA resistance in barley, the present investigation was framed to assess the genetic diversity and population structure of 43 wild barley (H. vulgare subsp. spontaneum) genotypes using eight microsatellite markers against R. maidis. Three statistical methods viz. multivariate-hierarchical clustering, Bayesian clustering and PCoA, unanimously grouped genotypes into three subpopulations (K = 3) with 25.58% (SubPop1-Red), 39.53% (SubPop2-Green) and 34.88% (SubPop3-Blue) genotypes including admixtures. Based on Q ≥ 66.66%, 37.20% genotypes formed a superficial “Mixed/Admixture” subpopulation. All polymorphic SSR markers generated 36 alleles, averaging to 4.5 alleles/locus (2–7 range). The PIC and H were highest in MS31 and lowest in MS28, with averages of 0.66 and 0.71. MAF and mean genetic diversity were 0.16 and 89.28%, respectively. All these parameters indicated the presence of predominant genetic diversity and population structure amongst the studied genotypes. Based on AII, only 6 genotypes were found to be R. maidis resistant. SubPop3 had 91.66% (11) of the resistant or moderately resistant genotypes. SubPop3 also had the most pure genotypes (11), the least aphid infestation (8.78), and the highest GS (0.88), indicating its suitability for future R. maidis resistance breeding initiatives.
ArticleNumber 17313
Author Maanju, Sunny
Yadav, Surender Singh
Kumar, Sudheer
Sharma, Preeti
Singh, Gyanendra Pratap
Kashyap, Prem Lal
Lal, Chuni
Jasrotia, Poonam
Jat, Manoj Kumar
Singh, Gyanendra
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  organization: ICAR-Indian Institute of Wheat and Barley Research
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  givenname: Surender Singh
  surname: Yadav
  fullname: Yadav, Surender Singh
  organization: CCS Haryana Agricultural University
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  fullname: Kashyap, Prem Lal
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  organization: ICAR-Indian Institute of Wheat and Barley Research, ICAR-National Bureau of Plant Genetic Resources
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SSID ssj0000529419
Score 2.4497595
Snippet Corn-leaf aphid (CLA- Rhopalosiphum maidis ) is a major insect pest of barley ( Hordeum vulgare ) causing yield loss upto 30% under severe infestation. Keeping...
Abstract Corn-leaf aphid (CLA- Rhopalosiphum maidis ) is a major insect pest of barley ( Hordeum vulgare ) causing yield loss upto 30% under severe...
Corn-leaf aphid (CLA-Rhopalosiphum maidis) is a major insect pest of barley (Hordeum vulgare) causing yield loss upto 30% under severe infestation. Keeping in...
Abstract Corn-leaf aphid (CLA-Rhopalosiphum maidis) is a major insect pest of barley (Hordeum vulgare) causing yield loss upto 30% under severe infestation....
SourceID doaj
pubmedcentral
proquest
crossref
springer
SourceType Open Website
Open Access Repository
Aggregation Database
Publisher
StartPage 17313
SubjectTerms 631/337
631/61
Alleles
Barley
Bayesian analysis
Corn
Genetic diversity
Genetic markers
Genotypes
Germplasm
Hordeum spontaneum
Hordeum vulgare
Humanities and Social Sciences
Leaves
Microsatellites
multidisciplinary
Pest resistance
Population genetics
Population structure
Population studies
Rhopalosiphum maidis
Science
Science (multidisciplinary)
Statistical methods
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Title Deciphering the genetic diversity and population structure of wild barley germplasm against corn leaf aphid, Rhopalosiphum maidis (Fitch)
URI https://link.springer.com/article/10.1038/s41598-023-42717-7
https://www.proquest.com/docview/2876185185
https://search.proquest.com/docview/2877386823
https://pubmed.ncbi.nlm.nih.gov/PMC10570286
https://doaj.org/article/f041a926635448f5acb298a651b56eac
Volume 13
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