Transcriptome and molecular regulatory mechanisms analysis of gills in the black tiger shrimp Penaeus monodon under chronic low-salinity stress
Background: Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals. Methods: In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinit...
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| Published in | Frontiers in physiology Vol. 14; p. 1118341 |
|---|---|
| Main Authors | , , , , , , , , , |
| Format | Journal Article |
| Language | English |
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Switzerland
Frontiers Media S.A
01.03.2023
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| Abstract | Background:
Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals.
Methods:
In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinities, 30 psu (HC group), 18 psu (MC group) and 3 psu (LC group)) was performed by high-throughput sequencing of economically cultured
Penaeus monodon
.
P. monodon
gill tissues from each treatment were collected for RNA-seq analysis to identify potential genes and pathways in response to low salinity stress.
Results:
A total of 64,475 unigenes were annotated in this study. There were 1,140 upregulated genes and 1,531 downregulated genes observed in the LC vs. HC group and 1,000 upregulated genes and 1,062 downregulated genes observed in the MC vs. HC group. In the LC vs. HC group, 583 DEGs significantly mapped to 37 signaling pathways, such as the NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, and PI3K-Akt signaling pathway; in the MC vs. HC group, 444 DEGs significantly mapped to 28 signaling pathways, such as the MAPK signaling pathway, Hippo signaling pathway and calcium signaling pathway. These pathways were significantly associated mainly with signal transduction, immunity and metabolism.
Conclusions:
These results suggest that low salinity stress may affect regulatory mechanisms such as metabolism, immunity, and signal transduction in addition to osmolarity in
P. monodon
. The greater the difference in salinity, the more significant the difference in genes. This study provides some guidance for understanding the low-salt domestication culture of
P. monodon
. |
|---|---|
| AbstractList | Background: Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals. Methods: In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinities, 30 psu (HC group), 18 psu (MC group) and 3 psu (LC group)) was performed by high-throughput sequencing of economically cultured Penaeus monodon. P. monodon gill tissues from each treatment were collected for RNA-seq analysis to identify potential genes and pathways in response to low salinity stress. Results: A total of 64,475 unigenes were annotated in this study. There were 1,140 upregulated genes and 1,531 downregulated genes observed in the LC vs. HC group and 1,000 upregulated genes and 1,062 downregulated genes observed in the MC vs. HC group. In the LC vs. HC group, 583 DEGs significantly mapped to 37 signaling pathways, such as the NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, and PI3K-Akt signaling pathway; in the MC vs. HC group, 444 DEGs significantly mapped to 28 signaling pathways, such as the MAPK signaling pathway, Hippo signaling pathway and calcium signaling pathway. These pathways were significantly associated mainly with signal transduction, immunity and metabolism. Conclusions: These results suggest that low salinity stress may affect regulatory mechanisms such as metabolism, immunity, and signal transduction in addition to osmolarity in P. monodon. The greater the difference in salinity, the more significant the difference in genes. This study provides some guidance for understanding the low-salt domestication culture of P. monodon.Background: Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals. Methods: In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinities, 30 psu (HC group), 18 psu (MC group) and 3 psu (LC group)) was performed by high-throughput sequencing of economically cultured Penaeus monodon. P. monodon gill tissues from each treatment were collected for RNA-seq analysis to identify potential genes and pathways in response to low salinity stress. Results: A total of 64,475 unigenes were annotated in this study. There were 1,140 upregulated genes and 1,531 downregulated genes observed in the LC vs. HC group and 1,000 upregulated genes and 1,062 downregulated genes observed in the MC vs. HC group. In the LC vs. HC group, 583 DEGs significantly mapped to 37 signaling pathways, such as the NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, and PI3K-Akt signaling pathway; in the MC vs. HC group, 444 DEGs significantly mapped to 28 signaling pathways, such as the MAPK signaling pathway, Hippo signaling pathway and calcium signaling pathway. These pathways were significantly associated mainly with signal transduction, immunity and metabolism. Conclusions: These results suggest that low salinity stress may affect regulatory mechanisms such as metabolism, immunity, and signal transduction in addition to osmolarity in P. monodon. The greater the difference in salinity, the more significant the difference in genes. This study provides some guidance for understanding the low-salt domestication culture of P. monodon. Background: Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals.Methods: In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinities, 30 psu (HC group), 18 psu (MC group) and 3 psu (LC group)) was performed by high-throughput sequencing of economically cultured Penaeus monodon. P. monodon gill tissues from each treatment were collected for RNA-seq analysis to identify potential genes and pathways in response to low salinity stress.Results: A total of 64,475 unigenes were annotated in this study. There were 1,140 upregulated genes and 1,531 downregulated genes observed in the LC vs. HC group and 1,000 upregulated genes and 1,062 downregulated genes observed in the MC vs. HC group. In the LC vs. HC group, 583 DEGs significantly mapped to 37 signaling pathways, such as the NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, and PI3K-Akt signaling pathway; in the MC vs. HC group, 444 DEGs significantly mapped to 28 signaling pathways, such as the MAPK signaling pathway, Hippo signaling pathway and calcium signaling pathway. These pathways were significantly associated mainly with signal transduction, immunity and metabolism.Conclusions: These results suggest that low salinity stress may affect regulatory mechanisms such as metabolism, immunity, and signal transduction in addition to osmolarity in P. monodon. The greater the difference in salinity, the more significant the difference in genes. This study provides some guidance for understanding the low-salt domestication culture of P. monodon. Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals. In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinities, 30 psu (HC group), 18 psu (MC group) and 3 psu (LC group)) was performed by high-throughput sequencing of economically cultured . gill tissues from each treatment were collected for RNA-seq analysis to identify potential genes and pathways in response to low salinity stress. A total of 64,475 unigenes were annotated in this study. There were 1,140 upregulated genes and 1,531 downregulated genes observed in the LC vs. HC group and 1,000 upregulated genes and 1,062 downregulated genes observed in the MC vs. HC group. In the LC vs. HC group, 583 DEGs significantly mapped to 37 signaling pathways, such as the NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, and PI3K-Akt signaling pathway; in the MC vs. HC group, 444 DEGs significantly mapped to 28 signaling pathways, such as the MAPK signaling pathway, Hippo signaling pathway and calcium signaling pathway. These pathways were significantly associated mainly with signal transduction, immunity and metabolism. These results suggest that low salinity stress may affect regulatory mechanisms such as metabolism, immunity, and signal transduction in addition to osmolarity in . The greater the difference in salinity, the more significant the difference in genes. This study provides some guidance for understanding the low-salt domestication culture of . Background: Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of aquatic animals. Methods: In this study, a comparative transcriptome analysis (maintained for 45 days in three different salinities, 30 psu (HC group), 18 psu (MC group) and 3 psu (LC group)) was performed by high-throughput sequencing of economically cultured Penaeus monodon . P. monodon gill tissues from each treatment were collected for RNA-seq analysis to identify potential genes and pathways in response to low salinity stress. Results: A total of 64,475 unigenes were annotated in this study. There were 1,140 upregulated genes and 1,531 downregulated genes observed in the LC vs. HC group and 1,000 upregulated genes and 1,062 downregulated genes observed in the MC vs. HC group. In the LC vs. HC group, 583 DEGs significantly mapped to 37 signaling pathways, such as the NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, and PI3K-Akt signaling pathway; in the MC vs. HC group, 444 DEGs significantly mapped to 28 signaling pathways, such as the MAPK signaling pathway, Hippo signaling pathway and calcium signaling pathway. These pathways were significantly associated mainly with signal transduction, immunity and metabolism. Conclusions: These results suggest that low salinity stress may affect regulatory mechanisms such as metabolism, immunity, and signal transduction in addition to osmolarity in P. monodon . The greater the difference in salinity, the more significant the difference in genes. This study provides some guidance for understanding the low-salt domestication culture of P. monodon . |
| Author | Si, Meng-Ru Zhou, Fa-Lin Yang, Li-Shi Yang, Qi-Bin Li, Yun-Dong Huang, Jian-Hua Jiang, Shi-Gui Chen, Xu Li, ErChao Jiang, Song |
| AuthorAffiliation | 2 Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization , Ministry of Agriculture and Rural Affairs , South China Sea Fisheries Research Institute , Chinese Academy of Fishery Sciences , Guangzhou , China 3 Key Laboratory of Efficient Utilization and Processing of Marine Fishery Resources of Hainan Province , Sanya Tropical Fisheries Research Institute , Sanya , China 1 Key Laboratory of Tropical Hydrobiology and Biotechnology of Hainan Province , Hainan Aquaculture Breeding Engineering Research Center , College of Marine Sciences , Hainan University , Haikou , China 4 Hainan Yazhou Bay Seed Laboratory , Sanya , China |
| AuthorAffiliation_xml | – name: 4 Hainan Yazhou Bay Seed Laboratory , Sanya , China – name: 3 Key Laboratory of Efficient Utilization and Processing of Marine Fishery Resources of Hainan Province , Sanya Tropical Fisheries Research Institute , Sanya , China – name: 1 Key Laboratory of Tropical Hydrobiology and Biotechnology of Hainan Province , Hainan Aquaculture Breeding Engineering Research Center , College of Marine Sciences , Hainan University , Haikou , China – name: 2 Key Laboratory of South China Sea Fishery Resources Exploitation and Utilization , Ministry of Agriculture and Rural Affairs , South China Sea Fisheries Research Institute , Chinese Academy of Fishery Sciences , Guangzhou , China |
| Author_xml | – sequence: 1 givenname: Yun-Dong surname: Li fullname: Li, Yun-Dong – sequence: 2 givenname: Meng-Ru surname: Si fullname: Si, Meng-Ru – sequence: 3 givenname: Shi-Gui surname: Jiang fullname: Jiang, Shi-Gui – sequence: 4 givenname: Qi-Bin surname: Yang fullname: Yang, Qi-Bin – sequence: 5 givenname: Song surname: Jiang fullname: Jiang, Song – sequence: 6 givenname: Li-Shi surname: Yang fullname: Yang, Li-Shi – sequence: 7 givenname: Jian-Hua surname: Huang fullname: Huang, Jian-Hua – sequence: 8 givenname: Xu surname: Chen fullname: Chen, Xu – sequence: 9 givenname: Fa-Lin surname: Zhou fullname: Zhou, Fa-Lin – sequence: 10 givenname: ErChao surname: Li fullname: Li, ErChao |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/36935747$$D View this record in MEDLINE/PubMed |
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| Copyright | Copyright © 2023 Li, Si, Jiang, Yang, Jiang, Yang, Huang, Chen, Zhou and Li. Copyright © 2023 Li, Si, Jiang, Yang, Jiang, Yang, Huang, Chen, Zhou and Li. 2023 Li, Si, Jiang, Yang, Jiang, Yang, Huang, Chen, Zhou and Li |
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| Keywords | Chronic low-salinity stress osmoregulation Penaeus Monodon adaptation mechanisms transcriptome |
| Language | English |
| License | Copyright © 2023 Li, Si, Jiang, Yang, Jiang, Yang, Huang, Chen, Zhou and Li. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 This article was submitted to Aquatic Physiology, a section of the journal Frontiers in Physiology Yang Zhang, South China Sea Institute of Oceanology (CAS), China These authors have contributed equally to this work Reviewed by: Ngoc Tuan Tran, Shantou University, China Edited by: Daniel Carneiro Moreira, University of Brasilia, Brazil |
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Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and... Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and reproduction of... Background: Salinity is one of the main influencing factors in the culture environment and is extremely important for the survival, growth, development and... |
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| Title | Transcriptome and molecular regulatory mechanisms analysis of gills in the black tiger shrimp Penaeus monodon under chronic low-salinity stress |
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