Spatial genetic patterns and distribution dynamics of Begonia grandis (Begoniaceae), a widespread herbaceous species in China
L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic structure and distribution dynamics of a widespread species in this genus will contribute to clarifying the mechanism responsible for speciatio...
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| Published in | Frontiers in plant science Vol. 14; p. 1178245 |
|---|---|
| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
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Frontiers Media S.A
10.05.2023
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| Online Access | Get full text |
| ISSN | 1664-462X 1664-462X |
| DOI | 10.3389/fpls.2023.1178245 |
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| Abstract | L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic structure and distribution dynamics of a widespread species in this genus will contribute to clarifying the mechanism responsible for
speciation.
In this study, we used three chloroplast DNA markers (
F-
32,
I-
H, and
A intron), coupled with species distribution modeling (SDM), to investigate the population genetic structure and distribution dynamics of
Dryand., the species of
with the widest distribution in China.
Thirty-five haplotypes from 44 populations clustered into two groups, and haplotype divergence began in the Pleistocene (1.75 Mya). High genetic diversity (
= 0.894,
= 0.910), strong genetic differentiation (
= 0.835), and significant phylogeographical structure (
/
= 0.848/0.917,
< 0.05) were observed. The distribution range of
migrated northwards after the last glacial maximum, but its core distribution area remained stable.
Combined, the observed spatial genetic patterns and SDM results identified the Yunnan-Guizhou Plateau, the Three Gorges region, and the Daba Mountains as potential refugia of
. BEAST-derived chronogram and haplotype network analysis do not support the Flora Reipublicae Popularis Sinicae and Flora of China for subspecies classification based on morphological characteristics. Our results support the hypothesis that population-level allopatric differentiation may be an important speciation process for the
genus and a key contributor to its rich diversity. |
|---|---|
| AbstractList | L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic structure and distribution dynamics of a widespread species in this genus will contribute to clarifying the mechanism responsible for
speciation.
In this study, we used three chloroplast DNA markers (
F-
32,
I-
H, and
A intron), coupled with species distribution modeling (SDM), to investigate the population genetic structure and distribution dynamics of
Dryand., the species of
with the widest distribution in China.
Thirty-five haplotypes from 44 populations clustered into two groups, and haplotype divergence began in the Pleistocene (1.75 Mya). High genetic diversity (
= 0.894,
= 0.910), strong genetic differentiation (
= 0.835), and significant phylogeographical structure (
/
= 0.848/0.917,
< 0.05) were observed. The distribution range of
migrated northwards after the last glacial maximum, but its core distribution area remained stable.
Combined, the observed spatial genetic patterns and SDM results identified the Yunnan-Guizhou Plateau, the Three Gorges region, and the Daba Mountains as potential refugia of
. BEAST-derived chronogram and haplotype network analysis do not support the Flora Reipublicae Popularis Sinicae and Flora of China for subspecies classification based on morphological characteristics. Our results support the hypothesis that population-level allopatric differentiation may be an important speciation process for the
genus and a key contributor to its rich diversity. Begonia L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic structure and distribution dynamics of a widespread species in this genus will contribute to clarifying the mechanism responsible for Begonia speciation.IntroductionBegonia L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic structure and distribution dynamics of a widespread species in this genus will contribute to clarifying the mechanism responsible for Begonia speciation.In this study, we used three chloroplast DNA markers (ndhF-rpl32, atpI-atpH, and ndhA intron), coupled with species distribution modeling (SDM), to investigate the population genetic structure and distribution dynamics of Begonia grandis Dryand., the species of Begonia with the widest distribution in China.MethodsIn this study, we used three chloroplast DNA markers (ndhF-rpl32, atpI-atpH, and ndhA intron), coupled with species distribution modeling (SDM), to investigate the population genetic structure and distribution dynamics of Begonia grandis Dryand., the species of Begonia with the widest distribution in China.Thirty-five haplotypes from 44 populations clustered into two groups, and haplotype divergence began in the Pleistocene (1.75 Mya). High genetic diversity (H d = 0.894, H T = 0.910), strong genetic differentiation (F ST = 0.835), and significant phylogeographical structure (G ST/N ST = 0.848/0.917, P < 0.05) were observed. The distribution range of B. grandis migrated northwards after the last glacial maximum, but its core distribution area remained stable.ResultsThirty-five haplotypes from 44 populations clustered into two groups, and haplotype divergence began in the Pleistocene (1.75 Mya). High genetic diversity (H d = 0.894, H T = 0.910), strong genetic differentiation (F ST = 0.835), and significant phylogeographical structure (G ST/N ST = 0.848/0.917, P < 0.05) were observed. The distribution range of B. grandis migrated northwards after the last glacial maximum, but its core distribution area remained stable.Combined, the observed spatial genetic patterns and SDM results identified the Yunnan-Guizhou Plateau, the Three Gorges region, and the Daba Mountains as potential refugia of B. grandis. BEAST-derived chronogram and haplotype network analysis do not support the Flora Reipublicae Popularis Sinicae and Flora of China for subspecies classification based on morphological characteristics. Our results support the hypothesis that population-level allopatric differentiation may be an important speciation process for the Begonia genus and a key contributor to its rich diversity.DiscussionCombined, the observed spatial genetic patterns and SDM results identified the Yunnan-Guizhou Plateau, the Three Gorges region, and the Daba Mountains as potential refugia of B. grandis. BEAST-derived chronogram and haplotype network analysis do not support the Flora Reipublicae Popularis Sinicae and Flora of China for subspecies classification based on morphological characteristics. Our results support the hypothesis that population-level allopatric differentiation may be an important speciation process for the Begonia genus and a key contributor to its rich diversity. IntroductionBegonia L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic structure and distribution dynamics of a widespread species in this genus will contribute to clarifying the mechanism responsible for Begonia speciation.MethodsIn this study, we used three chloroplast DNA markers (ndhF-rpl32, atpI-atpH, and ndhA intron), coupled with species distribution modeling (SDM), to investigate the population genetic structure and distribution dynamics of Begonia grandis Dryand., the species of Begonia with the widest distribution in China.ResultsThirty-five haplotypes from 44 populations clustered into two groups, and haplotype divergence began in the Pleistocene (1.75 Mya). High genetic diversity (Hd = 0.894, HT = 0.910), strong genetic differentiation (FST = 0.835), and significant phylogeographical structure (GST/NST = 0.848/0.917, P < 0.05) were observed. The distribution range of B. grandis migrated northwards after the last glacial maximum, but its core distribution area remained stable.DiscussionCombined, the observed spatial genetic patterns and SDM results identified the Yunnan-Guizhou Plateau, the Three Gorges region, and the Daba Mountains as potential refugia of B. grandis. BEAST-derived chronogram and haplotype network analysis do not support the Flora Reipublicae Popularis Sinicae and Flora of China for subspecies classification based on morphological characteristics. Our results support the hypothesis that population-level allopatric differentiation may be an important speciation process for the Begonia genus and a key contributor to its rich diversity. |
| Author | Xiao, Yan Jiang, Xiao-Long Li, Chun Li, Xiang-Peng Li, Xing-Juan Li, Wei-Ping Tian, Dai-Ke |
| AuthorAffiliation | 2 Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden , Shanghai , China 5 Institute of Plant Conservation, Hunan Botanic Garden , Changsha , China 1 College of Life Sciences, Hunan Normal University , Changsha , China 3 College of Forestry, Central South University of Forestry and Technology , Changsha , China 4 Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Institute of Sichuan Academy of Agricultural Sciences , Chengdu , China |
| AuthorAffiliation_xml | – name: 5 Institute of Plant Conservation, Hunan Botanic Garden , Changsha , China – name: 4 Vegetable Germplasm Innovation and Variety Improvement Key Laboratory of Sichuan Province, Horticulture Institute of Sichuan Academy of Agricultural Sciences , Chengdu , China – name: 1 College of Life Sciences, Hunan Normal University , Changsha , China – name: 3 College of Forestry, Central South University of Forestry and Technology , Changsha , China – name: 2 Shanghai Key Laboratory of Plant Functional Genomics and Resources, Shanghai Chenshan Botanical Garden , Shanghai , China |
| Author_xml | – sequence: 1 givenname: Yan surname: Xiao fullname: Xiao, Yan – sequence: 2 givenname: Xing-Juan surname: Li fullname: Li, Xing-Juan – sequence: 3 givenname: Xiao-Long surname: Jiang fullname: Jiang, Xiao-Long – sequence: 4 givenname: Chun surname: Li fullname: Li, Chun – sequence: 5 givenname: Xiang-Peng surname: Li fullname: Li, Xiang-Peng – sequence: 6 givenname: Wei-Ping surname: Li fullname: Li, Wei-Ping – sequence: 7 givenname: Dai-Ke surname: Tian fullname: Tian, Dai-Ke |
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| Copyright | Copyright © 2023 Xiao, Li, Jiang, Li, Li, Li and Tian. Copyright © 2023 Xiao, Li, Jiang, Li, Li, Li and Tian 2023 Xiao, Li, Jiang, Li, Li, Li and Tian |
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| Keywords | glacial refugia chloroplast DNA population genetic structure species distribution modeling Begonia phylogeography |
| Language | English |
| License | Copyright © 2023 Xiao, Li, Jiang, Li, Li, Li and Tian. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
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| Snippet | L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial genetic... Begonia L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding the spatial... IntroductionBegonia L., one of the 10 largest plant genera, contains over 2,100 species, most of which have a very limited distribution range. Understanding... |
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| SubjectTerms | Begonia chloroplast DNA glacial refugia phylogeography Plant Science population genetic structure species distribution modeling |
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| Title | Spatial genetic patterns and distribution dynamics of Begonia grandis (Begoniaceae), a widespread herbaceous species in China |
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