Rice breeding for low input agriculture
A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often need to improve in low-input settings since they are not adapted to these systems. In addition, rice is one of the most widely cultivated crop...
Saved in:
| Published in | Frontiers in plant science Vol. 15; p. 1408356 |
|---|---|
| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Switzerland
Frontiers Media S.A
21.06.2024
|
| Subjects | |
| Online Access | Get full text |
Cover
Loading…
| Abstract | A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often need to improve in low-input settings since they are not adapted to these systems. In addition, rice is one of the most widely cultivated crops worldwide. Enhancing rice performance under a low input system will significantly reduce the environmental concerns related to rice cultivation. Traits that help rice to maintain yield performance under minimum inputs like seedling vigor, appropriate root architecture for nutrient use efficiency should be incorporated into varieties for low input systems through integrated breeding approaches. Genes or QTLs controlling nutrient uptake, nutrient assimilation, nutrient remobilization, and root morphology need to be properly incorporated into the rice breeding pipeline. Also, genes/QTLs controlling suitable rice cultivars for sustainable farming. Since several variables influence performance under low input conditions, conventional breeding techniques make it challenging to work on many traits. However, recent advances in omics technologies have created enormous opportunities for rapidly improving multiple characteristics. This review highlights current research on features pertinent to low-input agriculture and provides an overview of alternative genomics-based breeding strategies for enhancing genetic gain in rice suitable for low-input farming practices. |
|---|---|
| AbstractList | A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often need to improve in low-input settings since they are not adapted to these systems. In addition, rice is one of the most widely cultivated crops worldwide. Enhancing rice performance under a low input system will significantly reduce the environmental concerns related to rice cultivation. Traits that help rice to maintain yield performance under minimum inputs like seedling vigor, appropriate root architecture for nutrient use efficiency should be incorporated into varieties for low input systems through integrated breeding approaches. Genes or QTLs controlling nutrient uptake, nutrient assimilation, nutrient remobilization, and root morphology need to be properly incorporated into the rice breeding pipeline. Also, genes/QTLs controlling suitable rice cultivars for sustainable farming. Since several variables influence performance under low input conditions, conventional breeding techniques make it challenging to work on many traits. However, recent advances in omics technologies have created enormous opportunities for rapidly improving multiple characteristics. This review highlights current research on features pertinent to low-input agriculture and provides an overview of alternative genomics-based breeding strategies for enhancing genetic gain in rice suitable for low-input farming practices. A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often need to improve in low-input settings since they are not adapted to these systems. In addition, rice is one of the most widely cultivated crops worldwide. Enhancing rice performance under a low input system will significantly reduce the environmental concerns related to rice cultivation. Traits that help rice to maintain yield performance under minimum inputs like seedling vigor, appropriate root architecture for nutrient use efficiency should be incorporated into varieties for low input systems through integrated breeding approaches. Genes or QTLs controlling nutrient uptake, nutrient assimilation, nutrient remobilization, and root morphology need to be properly incorporated into the rice breeding pipeline. Also, genes/QTLs controlling suitable rice cultivars for sustainable farming. Since several variables influence performance under low input conditions, conventional breeding techniques make it challenging to work on many traits. However, recent advances in omics technologies have created enormous opportunities for rapidly improving multiple characteristics. This review highlights current research on features pertinent to low-input agriculture and provides an overview of alternative genomics-based breeding strategies for enhancing genetic gain in rice suitable for low-input farming practices.A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often need to improve in low-input settings since they are not adapted to these systems. In addition, rice is one of the most widely cultivated crops worldwide. Enhancing rice performance under a low input system will significantly reduce the environmental concerns related to rice cultivation. Traits that help rice to maintain yield performance under minimum inputs like seedling vigor, appropriate root architecture for nutrient use efficiency should be incorporated into varieties for low input systems through integrated breeding approaches. Genes or QTLs controlling nutrient uptake, nutrient assimilation, nutrient remobilization, and root morphology need to be properly incorporated into the rice breeding pipeline. Also, genes/QTLs controlling suitable rice cultivars for sustainable farming. Since several variables influence performance under low input conditions, conventional breeding techniques make it challenging to work on many traits. However, recent advances in omics technologies have created enormous opportunities for rapidly improving multiple characteristics. This review highlights current research on features pertinent to low-input agriculture and provides an overview of alternative genomics-based breeding strategies for enhancing genetic gain in rice suitable for low-input farming practices. |
| Author | Tarpley, Lee Septiningsih, Endang M. Talukder, Shyamal K. Pradhan, Anjan Kumar Singh, Gurjeet Jyoti, Subroto Das |
| AuthorAffiliation | 2 Texas A&M AgriLife Research Center , Beaumont, TX , United States 1 Department of Soil and Crop Sciences, Texas A&M University , College Station, TX , United States |
| AuthorAffiliation_xml | – name: 2 Texas A&M AgriLife Research Center , Beaumont, TX , United States – name: 1 Department of Soil and Crop Sciences, Texas A&M University , College Station, TX , United States |
| Author_xml | – sequence: 1 givenname: Subroto Das surname: Jyoti fullname: Jyoti, Subroto Das – sequence: 2 givenname: Gurjeet surname: Singh fullname: Singh, Gurjeet – sequence: 3 givenname: Anjan Kumar surname: Pradhan fullname: Pradhan, Anjan Kumar – sequence: 4 givenname: Lee surname: Tarpley fullname: Tarpley, Lee – sequence: 5 givenname: Endang M. surname: Septiningsih fullname: Septiningsih, Endang M. – sequence: 6 givenname: Shyamal K. surname: Talukder fullname: Talukder, Shyamal K. |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/38974981$$D View this record in MEDLINE/PubMed |
| BookMark | eNp9kV9LHDEUxUOxVLv1A_RF5q2-7DaZ_H8qRdQKQqG00LeQSW62kexkTWYUv70z7la0D81Lws05v3u55z066HMPCH0keEWp0p_DNtVVi1u2IgwrysUbdESEYEsm2t8HL96H6LjWGzwdjrHW8h06nPySaUWO0Kcf0UHTFQAf-3UTcmlSvm9ivx2Hxq5LdGMaxgIf0NtgU4Xj_b1Avy7Of559W15_v7w6-3q9dEyIYempl4phHzreyVYR67kQCiQGDkEG4EEpgZmgRHHsOg_YSqk7K2RgElNMF-hqx_XZ3phtiRtbHky20TwVclkbW4boEhgPXnlwpJWMMeu05ox6S1hQGKgGPbG-7FjbsduAd9APxaZX0Nc_ffxj1vnOENK2bJ5ngU73hJJvR6iD2cTqICXbQx6roVgKKTjjYpKevGz23OXvqicB2QlcybUWCM8Sgs2cqJkTNXOiZp_o5JH_eFwc7BDzPG9M_3E-Am18pZU |
| CitedBy_id | crossref_primary_10_1093_bib_bbae702 crossref_primary_10_1007_s43538_024_00380_0 crossref_primary_10_1186_s12864_024_11037_z crossref_primary_10_1016_j_stress_2024_100707 |
| Cites_doi | 10.1038/srep42835 10.1093/jxb/erm033 10.1016/j.cj.2018.03.005 10.1016/j.rsci.2018.12.002 10.1111/pbi.12500 10.1111/pbi.14167 10.1007/s00299-022-02859-w 10.1002/ps.4145 10.1016/j.cj.2020.08.010 10.1111/jipb.12774 10.1016/j.fcr.2009.05.007 10.12688/f1000research 10.3389/fagro.2021.724450 10.1105/tpc.109.070821 10.1104/pp.105.063115 10.1002/pld3.417 10.1186/s12870-021-03041-2 10.1016/j.plaphy.2018.12.017 10.1111/pce.14284 10.1371/journal.pone.0156414 10.1093/jxb/eraa512 10.1007/s11104-017-3449-9 10.3389/fpls.2017.01094 10.1111/pbi.13058 10.1073/pnas.2005911117 10.1016/j.tplants.2021.03.010 10.3390/su9030347 10.1371/journal.pbio.1001124 10.1111/pbi.12303 10.1007/s00299-013-1389-2 10.1016/j.foodpol.2018.01.007 10.3389/fchem.2017.00097 10.3389/fpls.2021.670861 10.1016/j.cj.2022.07.001 10.1016/j.rsci.2021.11.002 10.1016/j.fcr.2009.05.008 10.1105/tpc.004861 10.1186/s12864-021-08104-0 10.1007/s00122-009-0963-z 10.1038/ismej.2017.85 10.1038/nature11069 10.1104/pp.103.024380 10.1111/j.1365-2486.2011.02502.x 10.1016/j.bbrc.2010.02.142 10.1038/s41598-018-37208-z 10.1534/genetics.112.144246 10.3389/fpls.2017.01166 10.3389/fpls.2018.00300 10.1186/s12870-023-04062-9 10.1016/j.soilbio.2014.09.001 10.1093/jxb/erv470 10.1626/jcs.56.608 10.1016/j.ecolecon.2007.10.007 10.1016/j.fcr.2023.109146 10.1111/nph.15678 10.1016/j.agee.2015.11.005 10.1016/j.rsci.2015.06.001 10.1016/j.molp.2016.11.013 10.1093/jxb/eru461 10.1186/s12284-023-00654-z 10.3389/fpls.2020.00588 10.1111/pbi.13475 10.1016/S0167-8809(01)00196-7 10.1111/pbi.13566 10.3389/fmicb.2017.02322 10.3390/ijms24065560 10.1093/gigascience/giab052 10.1038/nature13609 10.1146/annurev-arplant-050312-120106 10.3835/plantgenome2016.12.0130 10.1038/ng.2958 10.3389/fpls.2019.00633 10.3390/ijms20153636 10.1111/nph.15738 10.1007/s11104-020-04788-7 10.1016/j.fcr.2016.03.006 10.1111/nph.16158 10.1094/PDIS-11-15-1372-RE 10.1186/s12284-017-0158-1 10.2135/cropsci2011.06.0299 10.1016/j.rsci.2023.06.005 10.1007/s12284-010-9036-9 10.3389/fgene.2019.01392 10.3389/fpls.2018.01999 10.3389/fpls.2013.00269 10.1016/j.gene.2015.10.062 10.1614/WS-06-042R.1 10.1038/s41467-019-13110-8 10.1007/BF02901763 10.1371/journal.pone.0098737 10.2134/agronj1998.00021962009000050016x 10.1016/S0378-4290(98)00152-X 10.1038/s41467-021-27424-z 10.1186/s12284-021-00462-3 10.1002/csc2.20585 10.1016/j.fcr.2011.07.003 10.3835/plantgenome2016.03.0024 10.1007/s11103-020-01047-2 10.1080/07388551.2022.2112648 10.1016/j.compag.2020.105731 10.3835/plantgenome2016.11.0111 10.1016/j.plantsci.2010.04.004 10.1111/pbi.13450 10.1046/j.1462-2920.2000.00078.x 10.1007/s12298-020-00902-2 10.1007/s11103-015-0337-7 10.1371/journal.pone.0174598 10.1111/mec.14987 10.1111/pbi.12320 10.1111/j.1469-8137.2009.02839.x 10.1093/aob/mcw164 10.1016/j.cj.2021.12.006 10.1016/B978-0-12-811308-0.00006-5 10.1016/j.plaphy.2020.10.035 10.1016/j.compag.2018.05.003 10.1007/s00425-012-1698-7 10.1016/B978-0-12-385531-2.00002-5 10.1046/j.1365-3180.2000.00185.x 10.1146/annurev-arplant-050213-035715 10.3389/fpls.2020.576791 10.3389/fpls.2019.00752 10.1007/s00425-007-0541-z 10.1038/ng.3337 10.1111/pbi.13300 10.1093/aob/mcs293 10.1007/s10681-009-0014-5 10.1016/j.jia.2023.04.024 10.3389/fpls.2017.00286 10.1007/s10681-021-02868-y 10.1017/S0889189300008225 10.1080/07352689.2020.1801559 10.1007/s42770-019-00092-4 10.3390/agronomy12020380 10.1111/j.1365-3040.2009.02032.x 10.1038/s41598–019-41718–9 10.1038/s41598–022-17109-y 10.1007/s10535-016-0651-1 10.3389/fpls.2023.1197271 10.1093/jxb/ert298 10.1016/j.rhisph.2018.08.003 10.1093/jxb/erg084 10.1016/j.jenvman.2021.112458 10.1016/j.scitotenv.2023.162079 10.1002/tpg2.20077 10.1007/s10681-016-1778-z 10.1007/s12298-022-01247-8 10.1016/j.tplants.2017.08.011 10.1111/1365-2664.13446 10.1016/j.tplants.2017.09.003 10.1016/j.compag.2016.08.021 10.1007/s11032-019-0986-3 10.1371/journal.pone.0267303 10.1016/j.rsci.2020.05.003 10.1016/j.agee.2013.09.022 10.1093/pcp/pcy060 10.34133/plantphenomics.0019 10.1093/aob/mcy141 10.1186/s12284-017-0168-z 10.3390/plants12203564 10.1038/s41467-017-02781-w 10.1007/s11032-019-0989-0 10.1007/978-94-011-7113-7_13 10.3390/life12121981 10.1093/jxb/eraa450 10.1111/pce.14294 10.1016/j.fcr.2007.01.002 10.1038/nplants.2015.221 10.1016/j.jag.2021.102592 10.1016/j.plantsci.2014.08.006 10.1016/j.catena.2020.104694 10.1111/pbi.13812 10.3390/ijms19092827 10.1038/s41587-019-0104-4 10.1371/journal.pone.0124215 10.3389/fpls.2022.1017419 10.1017/S0889189300002721 10.1007/s11103-018-0768-z 10.1371/journal.pone.0223011 10.3389/fpls.2023.1134653 10.3390/plants9121673 10.1111/tpj.14794 10.1038/s41598–018-22101–6 10.1111/jipb.13214 10.1038/nature11237 10.1007/s10059-009-0161-5 10.1111/j.1467-7652.2008.00351.x 10.1105/tpc.16.00196 10.1094/MPMI-23-1-0029 10.1094/MPMI-01-17-0005-R 10.1111/pbi.12031 10.1111/pbi.12531 10.1038/srep44641 10.1300/J064v07n01_07 10.1093/jxb/erz074 10.1093/jxb/erz113 10.3390/agronomy12102567 10.2134/agronj14.0080 10.1038/s42003-021-02782-y 10.1016/j.plantsci.2014.05.013 10.1038/s41467-020-19019-x 10.1093/jxb/eraa292 10.1016/j.plaphy.2021.11.021 10.1104/pp.15.01192 10.1371/journal.pone.0228118 10.1016/j.semcdb.2019.04.008 10.1038/s41597-022-01592-z 10.1038/s41467-019-13187-1 10.1007/s00425-018-2892-z 10.1111/pce.12796 10.1007/s10681-008-9690-9 10.1111/pbi.12979 10.1111/pbi.13569 10.1016/j.jia.2022.07.057 10.1016/j.funbio.2023.04.005 10.2135/cropsci2000.402358x 10.1111/pce.13400 10.1016/j.fcr.2008.01.001 10.1016/j.tplants.2022.06.004 10.1111/tpj.15560 10.3390/agronomy9020095 10.1016/j.molp.2021.04.012 10.2136/sssaj1996.03615995006000060029x 10.1186/s12863-014-0155-y 10.2135/cropsci2012.06.0360 10.1016/j.cj.2021.03.008 10.1007/s10681-014-1169-2 10.1007/978-1-4939-7274-6_24 10.1038/nature11346 10.1016/S0065-2113(06)93004-1 10.1186/s12284-016-0116-3 10.1094/PBIOMES-01-19-0009-R 10.3389/fsufs.2020.618230 10.1186/s12284-019-0310-1 10.1016/j.agwat.2019.105889 10.1201/9781003070474-5 10.1111/nph.18775 10.1007/BF00220926 10.1104/pp.108.131979 10.1111/1462-2920.15659 |
| ContentType | Journal Article |
| Copyright | Copyright © 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder. Copyright © 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder |
| Copyright_xml | – notice: Copyright © 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder. – notice: Copyright © 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder |
| DBID | AAYXX CITATION NPM 7X8 5PM DOA |
| DOI | 10.3389/fpls.2024.1408356 |
| DatabaseName | CrossRef PubMed MEDLINE - Academic PubMed Central (Full Participant titles) DOAJ Directory of Open Access Journals |
| DatabaseTitle | CrossRef PubMed MEDLINE - Academic |
| DatabaseTitleList | CrossRef MEDLINE - Academic PubMed |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Botany |
| EISSN | 1664-462X |
| ExternalDocumentID | oai_doaj_org_article_ded8dec127444ac99543da14f80e39e9 PMC11224470 38974981 10_3389_fpls_2024_1408356 |
| Genre | Journal Article Review |
| GroupedDBID | 5VS 9T4 AAFWJ AAKDD AAYXX ACGFO ACGFS ACXDI ADBBV ADRAZ AENEX AFPKN ALMA_UNASSIGNED_HOLDINGS AOIJS BCNDV CITATION EBD ECGQY GROUPED_DOAJ GX1 HYE KQ8 M48 M~E OK1 PGMZT RNS RPM IPNFZ NPM RIG 7X8 5PM |
| ID | FETCH-LOGICAL-c466t-d3d7840dfb5b7281ad5668e70e5ef7fe5f88604631850cbde0a779ba67f470303 |
| IEDL.DBID | M48 |
| ISSN | 1664-462X |
| IngestDate | Wed Aug 27 01:28:56 EDT 2025 Thu Aug 21 18:32:23 EDT 2025 Fri Jul 11 10:51:36 EDT 2025 Mon Jul 21 06:00:22 EDT 2025 Tue Jul 01 01:39:41 EDT 2025 Thu Apr 24 22:56:54 EDT 2025 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Keywords | genomic selection genomics high-throughput phenotyping sustainability organic rice low-input agriculture |
| Language | English |
| License | Copyright © 2024 Jyoti, Singh, Pradhan, Tarpley, Septiningsih and Talukder. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c466t-d3d7840dfb5b7281ad5668e70e5ef7fe5f88604631850cbde0a779ba67f470303 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 ObjectType-Review-3 content type line 23 Reviewed by: Parameswaran C, Indian Council of Agricultural Research (ICAR), India Edited by: Dayun Tao, Yunnan Academy of Agricultural Sciences, China Anandan Annamalai, Indian Institute of Seed Science, India |
| OpenAccessLink | http://journals.scholarsportal.info/openUrl.xqy?doi=10.3389/fpls.2024.1408356 |
| PMID | 38974981 |
| PQID | 3076765456 |
| PQPubID | 23479 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_ded8dec127444ac99543da14f80e39e9 pubmedcentral_primary_oai_pubmedcentral_nih_gov_11224470 proquest_miscellaneous_3076765456 pubmed_primary_38974981 crossref_primary_10_3389_fpls_2024_1408356 crossref_citationtrail_10_3389_fpls_2024_1408356 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2024-06-21 |
| PublicationDateYYYYMMDD | 2024-06-21 |
| PublicationDate_xml | – month: 06 year: 2024 text: 2024-06-21 day: 21 |
| PublicationDecade | 2020 |
| PublicationPlace | Switzerland |
| PublicationPlace_xml | – name: Switzerland |
| PublicationTitle | Frontiers in plant science |
| PublicationTitleAlternate | Front Plant Sci |
| PublicationYear | 2024 |
| Publisher | Frontiers Media S.A |
| Publisher_xml | – name: Frontiers Media S.A |
| References | Wu (B215) 1995; 91 Shen (B168) 2020; 11 Lynch (B126) 2019; 223 He (B75) 2019; 17 Yi (B227) 2005; 138 Lu (B119) 2019; 39 Chen (B33) 2016; 14 Arunrat (B8) 2021; 289 Dingkuhn (B44) 1999; 61 Lu (B118) 2021; 104 Chen (B29) 2015; 13 Yang (B225) 2021; 9 L’Hoir (B105) 2021; 3 Hill (B77) 1996; 7 Verma (B193) 2022; 24 Stram (B177) 2017; 1666 Wang (B201) 2020; 194 Xue (B222) 2013; 53 Clark (B35) 1998; 90 Moin (B133) 2016; 39 Saito (B160) 2010; 179 Zhao (B241) 2021; 72 Fang (B55) 2013; 11 Fan (B53) 2014; 227 Huang (B85) 2022; 21 Chujo (B34) 2014; 9 He (B76) 2023; 24 van Bruggen (B189) 2016; 72 Lu (B120) 2021; 14 Singh (B172) 2024; 44 Atlin (B9) 1989; 4 Robertsen (B155) 2019; 9 Evans (B50) 1996 Wan (B195) 2021; 460 Sasse (B162) 2018; 23 Yokotani (B228) 2013; 64 Cuevas (B38) 2016; 9 Filipe (B58) 2018; 8 Julia (B92) 2016; 118 Vanloqueren (B190) 2008; 66 Barnaby (B16) 2022; 12 Plett (B148) 2017 Gaggion (B60) 2021; 10 Wang (B205) 2019; 39 Xu (B220) 2009; 118 Yuan (B233) 2007; 226 Zeng (B235) 2021; 217 Wei (B210) 2011; 124 Gutjahr (B69) 2009; 182 Hu (B81) 2021; 19 Vergara (B192) 2019; 50 Lorenz (B117) 2011; 110 Nerva (B138) 2022; 27 Lynch (B127) 2022; 109 Cairns (B26) 2009; 113 Karunarathne (B94) 2022; 64 Dinh (B45) 2023; 16 Lee (B101) 2019; 70 Peris-Peris (B146) 2017; 30 Pradhan (B150) 2020; 39 Bhat (B19) 2021; 4 Rao (B153) 2007; 93 Mickelson (B129) 2003; 54 Yu (B231) 2021; 19 Wang (B198) 2015; 22 Shrestha (B170) 1996; 60 Nguyen (B139) 2016; 212 Wu (B216) 2021; 19 Ranaivo (B152) 2022; 13 (B56) 2020 Kichey (B98) 2007; 102 Prasanna (B151) 2020; 10 Xin (B218) 2021; 12 Angaji (B5) 2010; 172 Mishra (B131) 2018; 75 Arunrat (B7) 2022; 12 Kaeppler (B93) 2000; 40 B79 Liu (B115) 2018; 6 Ludemann (B122) 2022; 9 Singh (B173) 2020; 104 Smith (B175) 2003; 133 Yuan (B232) 2021; 12 Huang (B87) 2016; 11 Zhu (B245) 2020; 157 Pérez-Jaramillo (B145) 2016; 90 Tsakirpaloglou (B187) 2023; 12 Liu (B113) 2023; 21 Moin (B132) 2017; 5 Liu (B114) 2022; 41 Zhou (B243) 2017; 8 Jacoby (B89) 2020; 9 Lee (B103) 2020; 103 Crossa (B37) 2017; 22 Wolfe (B213) 2008; 163 Hamaoka (B70) 2017; 10 Zhen (B242) 2019; 14 Poudel (B149) 2002; 90 Wassmann (B209) 2010 Bakshi (B13) 2017; 7 Khong (B97) 2015; 169 Waqas (B208) 2018; 19 Wang (B199) 2018; 41 Lee (B104) 2010; 23 Xue (B221) 2016; 100 Mu (B134) 2003; 48 Chen (B30) 2019; 26 Lee (B102) 2022; 12 Ludemann (B123) 2022 Zhang (B237) 2019; 37 Xu (B219) 2021; 9 Liu (B110) 2020; 18 Alfatih (B3) 2020; 71 Salvador-Guirao (B161) 2019; 123 Bai (B11) 2016; 128 Yamauchi (B224) 1987; 56 Zhu (B247) 2018; 248 He (B74) 2022; 20 Wang (B200) 2018; 9 Bisht (B21) 2019; 96 Kim (B99) 2009; 28 Li (B107) 2022; 10 Tezuka (B182) 2019; 135 Parr (B142) 2020 Wang (B203) 2021; 14 Wang (B207) 2020; 228 Volante (B194) 2017; 10 Barik (B15) 2022; 17 Eisenhauer (B47) 2017; 7 Liu (B111) 2017; 8 Grover (B67) 2021; 4 Wissuwa (B212) 2015; 10 Ning (B140) 2020; 27 Li (B106) 2019; 222 Seufert (B165) 2012; 485 Huang (B82) 2018; 9 Varshney (B191) 2021; 26 Linquist (B109) 2012; 18 Ahmad (B1) 2023; 871 Fofana (B59) 2000; 40 Bai (B12) 2023; 5 Lundberg (B124) 2012; 488 Rolfe (B158) 1997 Chen (B32) 2023; 23 Wu (B214) 2021; 169 Huang (B83) 2014; 65 Lynch (B125) 2013; 112 Shaodan (B166) 2023; 30 Yoon (B229) 2022; 6 Roja (B157) 2016; 60 Muellner (B135) 2014; 199 Hartley (B73) 2020; 71 Thapa (B183) 2021; 61 She (B167) 2010; 22 Dimkpa (B43) 2016; 67 Yamaguchi (B223) 2009; 150 Borianne (B22) 2018; 150 de Avila (B41) 2015; 107 Huang (B86) 2023; 14 Feng (B57) 2019; 12 Zhang (B238) 2017; 12 Kitomi (B100) 2020; 117 Zhang (B236) 2022; 12 Ajmera (B2) 2022; 45 Goto (B66) 2015; 13 Reganold (B154) 2016; 2 Mbodj (B128) 2018; 8 Gao (B64) 2023; 238 Bergelson (B18) 2019; 9 Zhu (B246) 2015; 66 Huang (B84) 2020; 225 Xie (B217) 2020; 178 Davidson (B39) 2019; 10 Wang (B196) 2014; 15 Burgueño (B25) 2012; 52 Sun (B178) 2014; 46 Fan (B54) 2020; 11 Hang (B71) 2024; 23 Eyre (B51) 2019; 3 Li (B108) 2019; 61 Gudi (B68) 2022; 28 Engelhard (B48) 2000; 2 Tibbs Cortes (B185) 2021; 14 Sattayachiti (B163) 2020; 9 Good (B65) 2011; 9 Harrison (B72) 2002; 14 Schmid (B164) 2019; 28 Szoboszlay (B180) 2015; 80 Chen (B31) 2023; 303 Nada (B136) 2014; 227 Wang (B204) 2017; 421 Ruan (B159) 2019; 17 Lu (B121) 2017; 10 (B49) 2023 Bulgarelli (B23) 2013; 64 de Vida (B42) 2006; 54 Yu (B230) 2018; 59 Khan (B96) 2019; 20 Sun (B179) 2017; 10 Altpeter (B4) 2016; 28 Gao (B62) 2019; 10 Panneerselvam (B141) 2023; 127 Robertson-Albertyn (B156) 2017; 8 Dawson (B40) 2008; 107 Pérez-Jaramillo (B144) 2017; 11 Wang (B206) 2016; 193 Namuco (B137) 2009; 113 Srikanth (B176) 2016; 576 Miro (B130) 2013; 4 Phan (B147) 2023; 14 Shrawat (B169) 2008; 6 Arnés (B6) 2013; 181 To (B186) 2020; 26 Hu (B80) 2015; 47 Peng (B143) 2012; 236 Zhao (B240) 2021; 72 Katayama (B95) 2019; 56 Dong (B46) 2019; 9 Ben Hassen (B17) 2018; 9 Chandran (B27) 2019; 9 Jia (B91) 2012; 192 (B188) 2022 Wang (B197) 2013; 32 Banerjee (B14) 2010; 394 Clark (B36) 1999; 14 Bi (B20) 2009; 32 Yang (B226) 2023; 11 Zhang (B239) 2022; 45 Gamuyao (B61) 2012; 488 Liu (B116) 2018; 98 Gao (B63) 2020; 11 Hong (B78) 2019; 10 Chen (B28) 2014; 514 Wang (B202) 2021; 19 Yuanyuan (B234) 2022; 29 Baba (B10) 2020; 15 Zhu (B244) 2016; 9 Wickings (B211) 2016; 218 Jarquín (B90) 2017; 10 Fan (B52) 2007; 58 Bundó (B24) 2016; 14 Shu (B171) 2021; 21 Tang (B181) 2019; 10 This (B184) 2010; 3 Singh (B174) 2017; 8 Parry (B88) 2007 Liu (B112) 2021; 22 |
| References_xml | – volume: 7 start-page: 1 year: 2017 ident: B13 article-title: Ectopic expression of Arabidopsis Target of Rapamycin (AtTOR) improves water-use efficiency and yield potential in rice publication-title: Sci. Rep. doi: 10.1038/srep42835 – volume: 58 start-page: 1729 year: 2007 ident: B52 article-title: Comparing nitrate storage and remobilization in two rice cultivars that differ in their nitrogen use efficiency publication-title: J. Exp. Bot. doi: 10.1093/jxb/erm033 – volume: 6 start-page: 341 year: 2018 ident: B115 article-title: Factors affecting genomic selection revealed by empirical evidence in maize publication-title: Crop J. doi: 10.1016/j.cj.2018.03.005 – volume: 26 start-page: 21 year: 2019 ident: B30 article-title: Identification of new resistance loci against sheath blight disease in rice through genome-wide association study publication-title: Rice Sci. doi: 10.1016/j.rsci.2018.12.002 – volume-title: World population prospects 2022: ten key messages year: 2022 ident: B188 – volume: 14 start-page: 1357 year: 2016 ident: B24 article-title: Enhancing blast disease resistance by overexpression of the calcium-dependent protein kinase OsCPK4 in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.12500 – volume: 21 start-page: 2169 year: 2023 ident: B113 article-title: CRISPR/Cas9-mediated elimination of OsHHO3, a transcriptional repressor of three AMMONIUM TRANSPORTER1 genes, improves nitrogen use efficiency in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.14167 – volume: 41 start-page: 1285 year: 2022 ident: B114 article-title: OsbHLH057 targets the AATCA cis-element to regulate disease resistance and drought tolerance in rice publication-title: Plant Cell Rep. doi: 10.1007/s00299-022-02859-w – volume: 72 start-page: 30 year: 2016 ident: B189 article-title: Plant disease management in organic farming systems publication-title: Pest Manag Sci. doi: 10.1002/ps.4145 – volume: 9 start-page: 360 year: 2021 ident: B225 article-title: Identification of QTL and candidate genes involved in early seedling growth in rice via high-density genetic mapping and RNA-seq publication-title: Crop J. doi: 10.1016/j.cj.2020.08.010 – volume: 61 start-page: 1201 year: 2019 ident: B108 article-title: Developing disease-resistant thermosensitive male sterile rice by multiplex gene editing publication-title: J. Integr. Plant Biol. doi: 10.1111/jipb.12774 – volume: 113 start-page: 207 year: 2009 ident: B26 article-title: Investigating early vigour in upland rice (Oryza sativa L.): Part II. Identification of QTLs controlling early vigour under greenhouse and field conditions publication-title: Field Crops Res. doi: 10.1016/j.fcr.2009.05.007 – volume: 9 start-page: 1 year: 2020 ident: B89 article-title: Recent advances in the role of plant metabolites in shaping the root microbiome publication-title: F1000Res doi: 10.12688/f1000research – volume: 3 year: 2021 ident: B105 article-title: Combining the seed endophytic bacteria and the back to the future approaches for plant holonbiont breeding publication-title: Front. Agron. doi: 10.3389/fagro.2021.724450 – volume: 22 start-page: 3280 year: 2010 ident: B167 article-title: A novel factor FLOURY ENDOSPERM2 is involved in regulation of rice grain size and starch quality publication-title: Plant Cell doi: 10.1105/tpc.109.070821 – volume: 138 start-page: 2087 year: 2005 ident: B227 article-title: OsPTF1, a novel transcription factor involved in tolerance to phosphate starvation in rice publication-title: Plant Physiol. doi: 10.1104/pp.105.063115 – volume: 6 start-page: 1 year: 2022 ident: B229 article-title: The gs3 allele from a large-grain rice cultivar, Akita 63, increases yield and improves nitrogen-use efficiency publication-title: Plant Direct doi: 10.1002/pld3.417 – volume: 21 start-page: 1 year: 2021 ident: B171 article-title: Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.) publication-title: BMC Plant Biol. doi: 10.1186/s12870-021-03041-2 – volume: 135 start-page: 263 year: 2019 ident: B182 article-title: The rice ethylene response factor OsERF83 positively regulates disease resistance to Magnaporthe oryzae publication-title: Plant Physiol. Biochem. doi: 10.1016/j.plaphy.2018.12.017 – volume: 45 start-page: 805 year: 2022 ident: B2 article-title: Integrated root phenotypes for improved rice performance under low nitrogen availability publication-title: Plant Cell Environ. doi: 10.1111/pce.14284 – volume: 11 start-page: 1 year: 2016 ident: B87 article-title: Multiple patterns of regulation and overexpression of a ribonuclease-like pathogenesis-related protein gene, OsPR10a, conferring disease resistance in rice and Arabidopsis publication-title: PloS One doi: 10.1371/journal.pone.0156414 – volume: 72 start-page: 1119 year: 2021 ident: B241 article-title: A genome-wide association study reveals that the glucosyltransferase OsIAGLU regulates root growth in rice publication-title: J. Exp. Bot. doi: 10.1093/jxb/eraa512 – volume: 421 start-page: 123 year: 2017 ident: B204 article-title: Differences in root-associated bacterial communities among fine root branching orders of poplar (Populus× euramericana (Dode) Guinier.) publication-title: Plant Soil doi: 10.1007/s11104-017-3449-9 – volume: 8 year: 2017 ident: B156 article-title: Root hair mutations displace the barley rhizosphere microbiota publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.01094 – volume: 17 start-page: 1344 year: 2019 ident: B159 article-title: OsACL-A2 negatively regulates cell death and disease resistance in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13058 – volume: 117 start-page: 21242 year: 2020 ident: B100 article-title: Root angle modifications by the DRO1 homolog improve rice yields in saline paddy fields publication-title: Proc. Natl. Acad. Sci. doi: 10.1073/pnas.2005911117 – volume: 26 start-page: 631 year: 2021 ident: B191 article-title: Designing future crops: genomics-assisted breeding comes of age publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2021.03.010 – volume: 9 year: 2018 ident: B17 article-title: Economic performance of traditional and modern rice varieties under different water management systems publication-title: Sustainability doi: 10.3390/su9030347 – volume: 9 start-page: 1 year: 2011 ident: B65 article-title: Fertilizing nature: A tragedy of excess in the commons publication-title: PloS Biol. doi: 10.1371/journal.pbio.1001124 – volume: 13 start-page: 753 year: 2015 ident: B66 article-title: Development of disease-resistant rice by optimized expression of WRKY45 publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.12303 – volume: 32 start-page: 1075 year: 2013 ident: B197 article-title: OsMPK3 positively regulates the JA signaling pathway and plant resistance to a chewing herbivore in rice publication-title: Plant Cell Rep. doi: 10.1007/s00299-013-1389-2 – volume: 75 start-page: 147 year: 2018 ident: B131 article-title: How can organic rice be a boon to smallholders? Evidence from contract farming in India publication-title: Food Policy doi: 10.1016/j.foodpol.2018.01.007 – volume: 5 year: 2017 ident: B132 article-title: Expression profiling of ribosomal protein gene family in dehydration stress responses and characterization of transgenic rice plants overexpressing RPL23A for water-use efficiency and tolerance to drought and salt stresses publication-title: Front. Chem. doi: 10.3389/fchem.2017.00097 – volume: 12 year: 2021 ident: B218 article-title: Candidate gene analysis for nitrogen absorption and utilization in japonica rice at the seedling stage based on a genome-wide association study publication-title: Front. Plant Sci. doi: 10.3389/fpls.2021.670861 – volume: 11 start-page: 108 year: 2023 ident: B226 article-title: OsNPF3.1, a member of the NRT1/PTR family, increases nitrogen use efficiency and biomass production in rice publication-title: Crop J. doi: 10.1016/j.cj.2022.07.001 – volume: 29 start-page: 277 year: 2022 ident: B234 article-title: Dissecting genetic basis of deep rooting in dongxiang wild rice publication-title: Rice Sci. doi: 10.1016/j.rsci.2021.11.002 – volume: 113 start-page: 197 year: 2009 ident: B137 article-title: Investigating early vigour in upland rice (Oryza sativa L.): Part I. Seedling growth and grain yield in competition with weeds publication-title: Field Crops Res. doi: 10.1016/j.fcr.2009.05.008 – volume: 14 start-page: 2413 year: 2002 ident: B72 article-title: A phosphate transporter from Medicago truncatula involved in the acquisition of phosphate released by arbuscular mycorrhizal fungi publication-title: Plant Cell doi: 10.1105/tpc.004861 – volume: 22 start-page: 1 year: 2021 ident: B112 article-title: Genome-wide analysis of Dof transcription factors and their response to cold stress in rice (Oryza sativa L.) publication-title: BMC Genomics doi: 10.1186/s12864-021-08104-0 – volume: 118 start-page: 1065 year: 2009 ident: B220 article-title: Leaf-level water use efficiency determined by carbon isotope discrimination in rice seedlings: Genetic variation associated with population structure and QTL mapping publication-title: Theor. Appl. Genet. doi: 10.1007/s00122-009-0963-z – volume: 11 start-page: 2244 year: 2017 ident: B144 article-title: Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits publication-title: ISME J. doi: 10.1038/ismej.2017.85 – volume: 485 start-page: 229 year: 2012 ident: B165 article-title: Comparing the yields of organic and conventional agriculture publication-title: Nature doi: 10.1038/nature11069 – volume: 133 start-page: 16 year: 2003 ident: B175 article-title: Mycorrhizal fungi can dominate phosphate supply to plants irrespective of growth responses publication-title: Plant Physiol. doi: 10.1104/pp.103.024380 – volume: 18 start-page: 194 year: 2012 ident: B109 article-title: An agronomic assessment of greenhouse gas emissions from major cereal crops publication-title: Glob Chang Biol. doi: 10.1111/j.1365-2486.2011.02502.x – volume: 394 start-page: 178 year: 2010 ident: B14 article-title: Functional role of rice germin-like protein1 in regulation of plant height and disease resistance publication-title: Biochem. Biophys. Res. Commun. doi: 10.1016/j.bbrc.2010.02.142 – volume: 9 start-page: 24 year: 2019 ident: B18 article-title: Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome publication-title: Sci. Rep. doi: 10.1038/s41598-018-37208-z – volume: 192 start-page: 1513 year: 2012 ident: B91 article-title: Multiple-trait genomic selection methods increase genetic value prediction accuracy publication-title: Genetics doi: 10.1534/genetics.112.144246 – volume: 8 year: 2017 ident: B243 article-title: Identification of QTL associated with nitrogen uptake and nitrogen use efficiency using high throughput genotyped CSSLs in rice (Oryza sativa l.) publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.01166 – volume: 9 year: 2018 ident: B82 article-title: Two splicing variants of OsNPF7.7 regulate shoot branching and nitrogen utilization efficiency in rice publication-title: Front. Plant Sci. doi: 10.3389/fpls.2018.00300 – volume: 23 start-page: 1 year: 2023 ident: B32 article-title: IPA1 improves drought tolerance by activating SNAC1 in rice publication-title: BMC Plant Biol. doi: 10.1186/s12870-023-04062-9 – volume: 80 start-page: 34 year: 2015 ident: B180 article-title: Comparison of root system architecture and rhizosphere microbial communities of Balsas teosinte and domesticated corn cultivars publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2014.09.001 – volume: 67 start-page: 1191 year: 2016 ident: B43 article-title: A genome-wide association study of a global rice panel reveals resistance in Oryza sativa to root-knot nematodes publication-title: J. Exp. Bot. doi: 10.1093/jxb/erv470 – volume: 56 start-page: 608 year: 1987 ident: B224 article-title: Quantitative analysis on root system structures of upland rice and maize publication-title: Japanese J. Crop Sci. doi: 10.1626/jcs.56.608 – volume: 66 start-page: 436 year: 2008 ident: B190 article-title: Why are ecological, low-input, multi-resistant wheat cultivars slow to develop commercially? a belgian agricultural ‘lock-in’case study publication-title: Ecol. Economics doi: 10.1016/j.ecolecon.2007.10.007 – volume: 303 start-page: 1 year: 2023 ident: B31 article-title: Overexpression of OsGS1;2 for improved nitrogen use efficiency and grain yield of rice: A field test publication-title: Field Crops Res. doi: 10.1016/j.fcr.2023.109146 – volume: 222 start-page: 1507 year: 2019 ident: B106 article-title: Osa-miR398b boosts H 2 O 2 production and rice blast disease-resistance via multiple superoxide dismutases publication-title: New Phytol. doi: 10.1111/nph.15678 – volume: 218 start-page: 1 year: 2016 ident: B211 article-title: Going with the flow: Landscape position drives differences in microbial biomass and activity in conventional, low input, and organic agricultural systems in the Midwestern U.S publication-title: Agric. Ecosyst. Environ. doi: 10.1016/j.agee.2015.11.005 – volume: 22 start-page: 255 year: 2015 ident: B198 article-title: Identification and cloning of tillering-related genes osMAX1 in rice publication-title: Rice Sci. doi: 10.1016/j.rsci.2015.06.001 – volume: 10 start-page: 523 year: 2017 ident: B121 article-title: Precise editing of a target base in the rice genome using a modified CRISPR/cas9 system publication-title: Mol. Plant doi: 10.1016/j.molp.2016.11.013 – volume: 66 start-page: 1017 year: 2015 ident: B246 article-title: Pectin enhances rice (Oryza sativa) root phosphorus remobilization publication-title: J. Exp. Bot. doi: 10.1093/jxb/eru461 – volume: 16 start-page: 1 year: 2023 ident: B45 article-title: Novel QTL for lateral root density and length improve phosphorus uptake in rice (Oryza sativa L.) publication-title: Rice doi: 10.1186/s12284-023-00654-z – volume: 11 year: 2020 ident: B54 article-title: A rice autophagy gene osATG8b is involved in nitrogen remobilization and control of grain quality publication-title: Front. Plant Sci. doi: 10.3389/fpls.2020.00588 – volume: 19 start-page: 448 year: 2021 ident: B216 article-title: Rice NIN-LIKE PROTEIN 4 plays a pivotal role in nitrogen use efficiency publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13475 – volume: 90 start-page: 125 year: 2002 ident: B149 article-title: Comparison of soil N availability and leaching potential, crop yields and weeds in organic, low-input and conventional farming systems in northern California publication-title: Agric. Ecosyst. Environ. doi: 10.1016/S0167-8809(01)00196-7 – volume: 19 start-page: 1511 year: 2021 ident: B81 article-title: Repressed OsMESL expression triggers reactive oxygen species-mediated broad-spectrum disease resistance in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13566 – volume: 8 year: 2017 ident: B111 article-title: Overexpression of OsCIPK30 enhances plant tolerance to Rice stripe virus publication-title: Front. Microbiol. doi: 10.3389/fmicb.2017.02322 – volume: 24 start-page: 1 year: 2023 ident: B76 article-title: OsαCA1 affects photosynthesis, yield potential, and water use efficiency in rice publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms24065560 – volume: 10 start-page: 1 year: 2021 ident: B60 article-title: ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture publication-title: Gigascience doi: 10.1093/gigascience/giab052 – volume: 514 start-page: 486 year: 2014 ident: B28 article-title: Producingmore grain with lower environmental costs publication-title: Nature doi: 10.1038/nature13609 – volume: 64 start-page: 807 year: 2013 ident: B23 article-title: Structure and functions of the bacterial microbiota of plants publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev-arplant-050312-120106 – volume: 10 start-page: plantgenome2016 year: 2017 ident: B90 article-title: Increasing genomic-enabled prediction accuracy by modeling genotype× environment interactions in Kansas wheat publication-title: Plant Genome doi: 10.3835/plantgenome2016.12.0130 – volume: 46 start-page: 652 year: 2014 ident: B178 article-title: Heterotrimeric G proteins regulate nitrogen-use efficiency in rice publication-title: Nat. Genet. doi: 10.1038/ng.2958 – volume: 10 year: 2019 ident: B39 article-title: Spatial effects and GWA mapping of root colonization assessed in the interaction between the rice diversity panel 1 and an arbuscular mycorrhizal fungus publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.00633 – volume: 20 start-page: 1 year: 2019 ident: B96 article-title: Exploring the potential of overexpressed osCIPK2 rice as a nitrogen utilization efficient crop and analysis of its associated rhizo-compartmental microbial communities publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms20153636 – volume: 223 start-page: 548 year: 2019 ident: B126 article-title: Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture publication-title: New Phytol. doi: 10.1111/nph.15738 – volume: 460 start-page: 483 year: 2021 ident: B195 article-title: Contribution of root traits to variations in soil microbial biomass and community composition publication-title: Plant Soil doi: 10.1007/s11104-020-04788-7 – volume: 193 start-page: 54 year: 2016 ident: B206 article-title: Grain yield, water and nitrogen use efficiencies of rice as influenced by irrigation regimes and their interaction with nitrogen rates publication-title: Field Crops Res. doi: 10.1016/j.fcr.2016.03.006 – volume: 225 start-page: 1762 year: 2020 ident: B84 article-title: Natural variation at Os CERK 1 regulates arbuscular mycorrhizal symbiosis in rice publication-title: New Phytol. doi: 10.1111/nph.16158 – volume: 100 start-page: 1634 year: 2016 ident: B221 article-title: Overexpression of OsOSM1 enhances resistance to rice sheath blight publication-title: Plant Dis. doi: 10.1094/PDIS-11-15-1372-RE – volume: 10 start-page: 1 year: 2017 ident: B70 article-title: A hairy-leaf gene, BLANKET LEAF, of wild Oryza nivara increases photosynthetic water use efficiency in rice publication-title: Rice doi: 10.1186/s12284-017-0158-1 – volume: 52 start-page: 707 year: 2012 ident: B25 article-title: Genomic prediction of breeding values when modeling genotype× environment interaction using pedigree and dense molecular markers publication-title: Crop Sci. doi: 10.2135/cropsci2011.06.0299 – volume: 30 start-page: 652 year: 2023 ident: B166 article-title: Application of UAV-based imaging and deep learning in assessment of rice blast resistance publication-title: Rice Sci. doi: 10.1016/j.rsci.2023.06.005 – volume: 3 start-page: 72 year: 2010 ident: B184 article-title: Genetic analysis of water use efficiency in rice (Oryza sativa L.) at the leaf level publication-title: Rice doi: 10.1007/s12284-010-9036-9 – volume: 10 year: 2020 ident: B151 article-title: Molecular breeding for nutritionally enriched maize: status and prospects publication-title: Front. Genet. doi: 10.3389/fgene.2019.01392 – volume: 9 year: 2019 ident: B27 article-title: miR396-osgrfs module balances growth and rice blast disease-resistance publication-title: Front. Plant Sci. doi: 10.3389/fpls.2018.01999 – volume: 4 year: 2013 ident: B130 article-title: Tolerance of anaerobic conditions caused by flooding during germination and early growth in rice (Oryza sativa L.) publication-title: Front. Plant Sci. doi: 10.3389/fpls.2013.00269 – volume: 576 start-page: 441 year: 2016 ident: B176 article-title: Enhanced expression of OsSPL14 gene and its association with yield components in rice (Oryza sativa) under low nitrogen conditions publication-title: Gene doi: 10.1016/j.gene.2015.10.062 – volume: 54 start-page: 1122 year: 2006 ident: B42 article-title: Relating rice traits to weed competitiveness and yield: a path analysis publication-title: Weed Sci. doi: 10.1614/WS-06-042R.1 – volume: 10 start-page: 1 year: 2019 ident: B62 article-title: The indica nitrate reductase gene OsNR2 allele enhances rice yield potential and nitrogen use efficiency publication-title: Nat. Commun. doi: 10.1038/s41467-019-13110-8 – volume: 48 start-page: 2718 year: 2003 ident: B134 article-title: QTL mapping of the root traits and their correlation analysis with drought resistance using DH lines from paddy and upland rice cross publication-title: Chin. Sci. Bull. doi: 10.1007/BF02901763 – volume: 9 start-page: 1 year: 2014 ident: B34 article-title: Overexpression of phosphomimic mutated OsWRKY53 leads to enhanced blast resistance in rice publication-title: PloS One doi: 10.1371/journal.pone.0098737 – volume: 90 start-page: 662 year: 1998 ident: B35 article-title: Changes in soil chemical properties resulting from organic and low-input farming practices publication-title: Agron. J. doi: 10.2134/agronj1998.00021962009000050016x – volume: 61 start-page: 79 year: 1999 ident: B44 article-title: Relationships between upland rice canopy characteristics and weed competitiveness publication-title: Field Crops Res. doi: 10.1016/S0378-4290(98)00152-X – volume: 12 start-page: 1 year: 2021 ident: B232 article-title: Sustainable intensification for a larger global rice bowl publication-title: Nat. Commun. doi: 10.1038/s41467-021-27424-z – start-page: 411 volume-title: Rice and global climate change. Rice in the global economy: strategic research and policy issues for food security year: 2010 ident: B209 – volume: 14 start-page: 1 year: 2021 ident: B120 article-title: Genome-wide association study dissects resistance loci against bacterial blight in a diverse rice panel from the 3000 rice genomes project publication-title: Rice doi: 10.1186/s12284-021-00462-3 – volume: 61 start-page: 3931 year: 2021 ident: B183 article-title: Genome-wide association study for traits related to seedling vigor in rice publication-title: Crop Sci. doi: 10.1002/csc2.20585 – volume: 124 start-page: 340 year: 2011 ident: B210 article-title: Genetic dissection of grain nitrogen use efficiency and grain yield and their relationship in rice publication-title: Field Crops Res. doi: 10.1016/j.fcr.2011.07.003 – volume: 9 year: 2016 ident: B38 article-title: Genomic prediction of genotype × environment interaction kernel regression models publication-title: Plant Genome doi: 10.3835/plantgenome2016.03.0024 – volume: 104 start-page: 397 year: 2020 ident: B173 article-title: OsJAZ9 overexpression modulates jasmonic acid biosynthesis and potassium deficiency responses in rice publication-title: Plant Mol. Biol. doi: 10.1007/s11103-020-01047-2 – volume: 44 start-page: 139 year: 2024 ident: B172 article-title: 2Gs and plant architecture: breaking grain yield ceiling through breeding approaches for next wave of revolution in rice (Oryza sativa L.) publication-title: Crit. Rev. Biotechnol. doi: 10.1080/07388551.2022.2112648 – volume: 178 start-page: 1 year: 2020 ident: B217 article-title: A review on plant high-throughput phenotyping traits using UAV-based sensors publication-title: Comput. Electron Agric. doi: 10.1016/j.compag.2020.105731 – volume: 10 start-page: 1 year: 2017 ident: B179 article-title: Multitrait, random regression, or simple repeatability model in high-throughput phenotyping data improve genomic prediction for wheat grain yield publication-title: Plant Genome doi: 10.3835/plantgenome2016.11.0111 – volume: 179 start-page: 97 year: 2010 ident: B160 article-title: Map-based cloning of the rice cold tolerance gene Ctb1 publication-title: Plant Sci. doi: 10.1016/j.plantsci.2010.04.004 – volume: 19 start-page: 167 year: 2021 ident: B231 article-title: Enhanced OsNLP4-OsNiR cascade confers nitrogen use efficiency by promoting tiller number in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13450 – volume: 2 start-page: 131 year: 2000 ident: B48 article-title: Preferential occurrence of diazotrophic endophytes, Azoarcus spp., in wild rice species and land races of Oryza sativa in comparison with modern races publication-title: Environ. Microbiol. doi: 10.1046/j.1462-2920.2000.00078.x – volume: 26 start-page: 2267 year: 2020 ident: B186 article-title: A genome-wide association study reveals the quantitative trait locus and candidate genes that regulate phosphate efficiency in a Vietnamese rice collection publication-title: Physiol. Mol. Biol. Plants doi: 10.1007/s12298-020-00902-2 – volume: 90 start-page: 635 year: 2016 ident: B145 article-title: Impact of plant domestication on rhizosphere microbiome assembly and functions publication-title: Plant Mol. Biol. doi: 10.1007/s11103-015-0337-7 – volume: 12 start-page: 1 year: 2017 ident: B238 article-title: Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm publication-title: PloS One doi: 10.1371/journal.pone.0174598 – year: 2023 ident: B49 article-title: Inventory of U.S. greenhouse gas emissions and sinks: 1990-2021 – volume: 28 start-page: 863 year: 2019 ident: B164 article-title: Feedbacks of plant identity and diversity on the diversity and community composition of rhizosphere microbiomes from a long-term biodiversity experiment publication-title: Mol. Ecol. doi: 10.1111/mec.14987 – volume: 13 start-page: 833 year: 2015 ident: B29 article-title: Improving rice tolerance to potassium deficiency by enhancing OsHAK16p: WOX11-controlled root development publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.12320 – volume: 182 start-page: 829 year: 2009 ident: B69 article-title: Glomus intraradices induces changes in root system architecture of rice independently of common symbiosis signaling publication-title: New Phytol. doi: 10.1111/j.1469-8137.2009.02839.x – volume: 118 start-page: 1151 year: 2016 ident: B92 article-title: Phosphorus uptake, partitioning and redistribution during grain filling in rice publication-title: Ann. Bot. doi: 10.1093/aob/mcw164 – volume: 10 start-page: 942 year: 2022 ident: B107 article-title: Genome-wide association study and transcriptome analysis reveal new QTL and candidate genes for nitrogen-deficiency tolerance in rice publication-title: Crop J. doi: 10.1016/j.cj.2021.12.006 – start-page: 93 volume-title: Plant macronutrient use efficiency: molecular and genomic perspectives in crop plants year: 2017 ident: B148 article-title: Molecular genetics to discover and improve nitrogen use efficiency in crop plants doi: 10.1016/B978-0-12-811308-0.00006-5 – volume: 157 start-page: 359 year: 2020 ident: B245 article-title: Leaf width gene LW5/D1 affects plant architecture and yield in rice by regulating nitrogen utilization efficiency publication-title: Plant Physiol. Biochem. doi: 10.1016/j.plaphy.2020.10.035 – volume: 150 start-page: 328 year: 2018 ident: B22 article-title: GT-RootS: An integrated software for automated root system measurement from high-throughput phenotyping platform images publication-title: Comput. Electron Agric. doi: 10.1016/j.compag.2018.05.003 – volume: 236 start-page: 1485 year: 2012 ident: B143 article-title: Constitutive expression of rice WRKY30 gene increases the endogenous jasmonic acid accumulation, PR gene expression and resistance to fungal pathogens in rice publication-title: Planta doi: 10.1007/s00425-012-1698-7 – volume: 110 start-page: 77 year: 2011 ident: B117 article-title: Genomic selection in plant breeding. Knowledge and prospects publication-title: Adv. Agron. doi: 10.1016/B978-0-12-385531-2.00002-5 – volume: 40 start-page: 271 year: 2000 ident: B59 article-title: Weed suppression ability of upland rice under low-input conditions in West Africa publication-title: Weed Res. doi: 10.1046/j.1365-3180.2000.00185.x – volume: 65 start-page: 531 year: 2014 ident: B83 article-title: Natural variations and genome-wide association studies in crop plants publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev-arplant-050213-035715 – volume: 11 year: 2020 ident: B168 article-title: High-throughput in situ root image segmentation based on the improved deepLabv3+ Method publication-title: Front. Plant Sci. doi: 10.3389/fpls.2020.576791 – volume: 10 year: 2019 ident: B78 article-title: The OsMPK15 negatively regulates Magnaporthe oryza and Xoo disease resistance via SA and JA signaling pathway in rice publication-title: Front. Plant Sci. doi: 10.3389/fpls.2019.00752 – volume: 226 start-page: 953 year: 2007 ident: B233 article-title: Mitogen-activated protein kinase OsMPK6 negatively regulates rice disease resistance to bacterial pathogens publication-title: Planta doi: 10.1007/s00425-007-0541-z – volume: 47 start-page: 834 year: 2015 ident: B80 article-title: Variation in NRT1. 1B contributes to nitrate-use divergence between rice subspecies publication-title: Nat. Genet. doi: 10.1038/ng.3337 – volume: 18 start-page: 1376 year: 2020 ident: B110 article-title: Genome-wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13300 – volume: 112 start-page: 347 year: 2013 ident: B125 article-title: Steep, cheap and deep: An ideotype to optimize water and N acquisition by maize root systems publication-title: Ann. Bot. doi: 10.1093/aob/mcs293 – volume: 172 start-page: 159 year: 2010 ident: B5 article-title: QTLs associated with tolerance of flooding during germination in rice (O ryza sativa L.) publication-title: Euphytica doi: 10.1007/s10681-009-0014-5 – volume: 23 start-page: 1087 year: 2024 ident: B71 article-title: OsNPF3.1, a nitrate, abscisic acid and gibberellin transporter gene, is essential for rice tillering and nitrogen utilization efficiency publication-title: J. Integr. Agric. doi: 10.1016/j.jia.2023.04.024 – volume: 8 year: 2017 ident: B174 article-title: QTL hotspots for early vigor and related traits under dry direct-seeded system in rice (Oryza sativa L.) publication-title: Front. Plant Sci. doi: 10.3389/fpls.2017.00286 – volume: 217 start-page: 1 year: 2021 ident: B235 article-title: Genome-wide association study reveals early seedling vigour-associated quantitative trait loci in indica rice publication-title: Euphytica doi: 10.1007/s10681-021-02868-y – volume: 14 start-page: 109 year: 1999 ident: B36 article-title: Crop-yield and economic comparisons of organic, low-input, and conventional farming systems in California’s Sacramento Valley publication-title: Am. J. Altern. Agric. doi: 10.1017/S0889189300008225 – volume: 39 start-page: 360 year: 2020 ident: B150 article-title: Genetics, molecular mechanisms and deployment of bacterial blight resistance genes in rice publication-title: CRC Crit. Rev. Plant Sci. doi: 10.1080/07352689.2020.1801559 – volume: 50 start-page: 825 year: 2019 ident: B192 article-title: Dark septate endophytic fungi increase the activity of proton pumps, efficiency of 15 N recovery from ammonium sulphate, N content, and micronutrient levels in rice plants publication-title: Braz. J. Microbiol. doi: 10.1007/s42770-019-00092-4 – volume-title: Global data on fertilizer use by crop and by country [Dataset] year: 2022 ident: B123 – volume: 12 start-page: 380 year: 2022 ident: B7 article-title: Carbon, nitrogen and water footprints of organic rice and conventional rice production over 4 years of cultivation: A case study in the Lower North of Thailand publication-title: Agronomy doi: 10.3390/agronomy12020380 – volume: 32 start-page: 1749 year: 2009 ident: B20 article-title: Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling publication-title: Plant Cell Environ. doi: 10.1111/j.1365-3040.2009.02032.x – volume: 9 start-page: 1 year: 2019 ident: B46 article-title: The rice phosphate transporter protein osPT8 regulates disease resistance and plant growth publication-title: Sci. Rep. doi: 10.1038/s41598–019-41718–9 – volume: 12 start-page: 1 year: 2022 ident: B16 article-title: Identification of quantitative trait loci for tillering, root, and shoot biomass at the maximum tillering stage in rice publication-title: Sci. Rep. doi: 10.1038/s41598–022-17109-y – volume: 60 start-page: 757 year: 2016 ident: B157 article-title: Finding genomic regions and candidate genes governing water use efficiency in rice publication-title: Biol. Plant doi: 10.1007/s10535-016-0651-1 – volume: 14 year: 2023 ident: B147 article-title: Identification of quantitative trait loci controlling nitrogen use efficiency-related traits in rice at the seedling stage under salt condition by genome-wide association study publication-title: Front. Plant Sci. doi: 10.3389/fpls.2023.1197271 – volume: 64 start-page: 5085 year: 2013 ident: B228 article-title: WRKY76 is a rice transcriptional repressor playing opposite roles in blast disease resistance and cold stress tolerance publication-title: J. Exp. Bot. doi: 10.1093/jxb/ert298 – volume: 8 start-page: 12 year: 2018 ident: B128 article-title: Arbuscular mycorrhizal symbiosis in rice: establishment, environmental control and impact on plant growth and resistance to abiotic stresses publication-title: Rhizosphere doi: 10.1016/j.rhisph.2018.08.003 – volume: 54 start-page: 801 year: 2003 ident: B129 article-title: Mapping of QTL associated with nitrogen storage and remobilization in barley (Hordeum vulgare L.) leaves publication-title: J. Exp. Bot. doi: 10.1093/jxb/erg084 – volume: 289 start-page: 112458 year: 2021 ident: B8 article-title: Carbon footprint and predicting the impact of climate change on carbon sequestration ecosystem services of organic rice farming and conventional rice farming: A case study in Phichit province, Thailand publication-title: J. Environ. Manag. doi: 10.1016/j.jenvman.2021.112458 – volume: 871 start-page: 1 year: 2023 ident: B1 article-title: Rice cultivation and processing: Highlights from a life cycle thinking perspective publication-title: Sci. Total Environ. doi: 10.1016/j.scitotenv.2023.162079 – volume: 14 start-page: 1 year: 2021 ident: B185 article-title: Status and prospects of genome-wide association studies in plants publication-title: Plant Genome doi: 10.1002/tpg2.20077 – volume: 212 start-page: 473 year: 2016 ident: B139 article-title: QTL mapping for nitrogen use efficiency and related physiological and agronomical traits during the vegetative phase in rice under hydroponics publication-title: Euphytica doi: 10.1007/s10681-016-1778-z – volume: 28 start-page: 1921 year: 2022 ident: B68 article-title: Strategies for accelerating genetic gains in crop plants: Special focus on speed breeding publication-title: Physiol. Mol. Biol. Plants doi: 10.1007/s12298-022-01247-8 – volume: 22 start-page: 961 year: 2017 ident: B37 article-title: Genomic selection in plant breeding: methods, models, and perspectives publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2017.08.011 – volume: 56 start-page: 1970 year: 2019 ident: B95 article-title: Organic farming and associated management practices benefit multiple wildlife taxa: a large-scale field study in rice paddy landscapes publication-title: J. Appl. Ecol. doi: 10.1111/1365-2664.13446 – volume: 23 start-page: 25 year: 2018 ident: B162 article-title: Feed your friends: do plant exudates shape the root microbiome publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2017.09.003 – volume: 128 start-page: 181 year: 2016 ident: B11 article-title: A multi-sensor system for high throughput field phenotyping in soybean and wheat breeding publication-title: Comput. Electron Agric. doi: 10.1016/j.compag.2016.08.021 – volume: 39 start-page: 1 year: 2019 ident: B205 article-title: Efficiency of linear selection index in predicting rice hybrid performance publication-title: Mol. Breed. doi: 10.1007/s11032-019-0986-3 – volume: 17 start-page: 1 year: 2022 ident: B15 article-title: Unraveling the genomic regions controlling the seed vigour index, root growth parameters and germination per cent in rice publication-title: PloS One doi: 10.1371/journal.pone.0267303 – volume: 27 start-page: 263 year: 2020 ident: B140 article-title: Strategy for use of rice blast resistance genes in rice molecular breeding publication-title: Rice Sci. doi: 10.1016/j.rsci.2020.05.003 – ident: B79 – volume: 181 start-page: 195 year: 2013 ident: B6 article-title: Sustainability and climate variability in low-input peasant maize systems in the central Mexican highlands publication-title: Agric. Ecosyst. Environ. doi: 10.1016/j.agee.2013.09.022 – volume: 59 start-page: 1234 year: 2018 ident: B230 article-title: Overexpression of miR169o, an overlapping MicroRNA in response to both nitrogen limitation and bacterial infection, promotes nitrogen use efficiency and susceptibility to bacterial blight in rice publication-title: Plant Cell Physiol. doi: 10.1093/pcp/pcy060 – volume: 5 start-page: 0019 year: 2023 ident: B12 article-title: Dynamic UAV phenotyping for rice disease resistance analysis based on multisource data publication-title: Plant Phenomics doi: 10.34133/plantphenomics.0019 – volume: 123 start-page: 79 year: 2019 ident: B161 article-title: Osdcl1a activation impairs phytoalexin biosynthesis and compromises disease resistance in rice publication-title: Ann. Bot. doi: 10.1093/aob/mcy141 – volume: 10 start-page: 1 year: 2017 ident: B194 article-title: Identification of bakanae disease resistance loci in japonica rice through genome wide association study publication-title: Rice doi: 10.1186/s12284-017-0168-z – volume: 12 start-page: 1 year: 2023 ident: B187 article-title: Guidelines for performing CRISPR/cas9 genome editing for gene validation and trait improvement in crops publication-title: Plants doi: 10.3390/plants12203564 – volume: 9 start-page: 1 year: 2018 ident: B200 article-title: Genetic variations in ARE1 mediate grain yield by modulating nitrogen utilization in rice publication-title: Nat. Commun. doi: 10.1038/s41467-017-02781-w – volume: 39 start-page: 1 year: 2019 ident: B119 article-title: Detecting novel loci underlying rice blast resistance by integrating a genome-wide association study and RNA sequencing publication-title: Mol. Breed. doi: 10.1007/s11032-019-0989-0 – volume-title: Crop evolution, adaptation and yield year: 1996 ident: B50 – volume-title: Root morphogenesis in legumes and cereals and the effect of bacterial inoculation on root development year: 1997 ident: B158 doi: 10.1007/978-94-011-7113-7_13 – volume: 12 start-page: 1 year: 2022 ident: B236 article-title: Overexpression of nitrate transporter 1/peptide gene osNPF7.6 increases rice yield and nitrogen use efficiency publication-title: Life doi: 10.3390/life12121981 – volume: 72 start-page: 608 year: 2021 ident: B240 article-title: A novel glycine-rich domain protein, GRDP1, functions as a critical feedback regulator for controlling cell death and disease resistance in rice publication-title: J. Exp. Bot. doi: 10.1093/jxb/eraa450 – volume: 45 start-page: 1520 year: 2022 ident: B239 article-title: Rice NIN-LIKE PROTEIN 3 modulates nitrogen use efficiency and grain yield under nitrate-sufficient conditions publication-title: Plant Cell Environ. doi: 10.1111/pce.14294 – volume: 102 start-page: 22 year: 2007 ident: B98 article-title: In winter wheat (Triticum aestivum L.), post-anthesis nitrogen uptake and remobilisation to the grain correlates with agronomic traits and nitrogen physiological markers publication-title: Field Crops Res. doi: 10.1016/j.fcr.2007.01.002 – volume: 2 start-page: 1 year: 2016 ident: B154 article-title: Organic agriculture in the twenty-first century publication-title: Nat. Plants doi: 10.1038/nplants.2015.221 – volume: 104 start-page: 102592 year: 2021 ident: B118 article-title: Improving Unmanned Aerial Vehicle (UAV) remote sensing of rice plant potassium accumulation by fusing spectral and textural information publication-title: Int. J. Appl. Earth Observat. Geoinformation doi: 10.1016/j.jag.2021.102592 – volume: 227 start-page: 165 year: 2014 ident: B136 article-title: Aquaporins are major determinants of water use efficiency of rice plants in the field publication-title: Plant Sci. doi: 10.1016/j.plantsci.2014.08.006 – volume: 194 start-page: 104694 year: 2020 ident: B201 article-title: Effects of vegetation type, fine and coarse roots on soil microbial communities and enzyme activities in eastern Tibetan plateau publication-title: Catena (Amst) doi: 10.1016/j.catena.2020.104694 – volume: 20 start-page: 1346 year: 2022 ident: B74 article-title: OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13812 – volume: 19 start-page: 1 year: 2018 ident: B208 article-title: Protein phosphatase (PP2C9) induces protein expression differentially to mediate nitrogen utilization efficiency in rice under nitrogen-deficient condition publication-title: Int. J. Mol. Sci. doi: 10.3390/ijms19092827 – volume: 37 start-page: 676 year: 2019 ident: B237 article-title: NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice publication-title: Nat. Biotechnol. doi: 10.1038/s41587-019-0104-4 – volume: 10 start-page: 1 year: 2015 ident: B212 article-title: Unmasking novel loci for internal phosphorus utilization efficiency in rice germplasm through genome-wide association analysis publication-title: PloS One doi: 10.1371/journal.pone.0124215 – volume: 13 year: 2022 ident: B152 article-title: QTL mapping for early root and shoot vigor of upland rice (Oryza sativa L.) under P deficient field conditions in Japan and Madagascar publication-title: Front. Plant Sci. doi: 10.3389/fpls.2022.1017419 – volume: 4 start-page: 53 year: 1989 ident: B9 article-title: Breeding crop varieties for low-input agriculture publication-title: Am. J. Altern. Agric. doi: 10.1017/S0889189300002721 – volume: 98 start-page: 289 year: 2018 ident: B116 article-title: NAC transcription factor ONAC066 positively regulates disease resistance by suppressing the ABA signaling pathway in rice publication-title: Plant Mol. Biol. doi: 10.1007/s11103-018-0768-z – volume: 14 start-page: 1 year: 2019 ident: B242 article-title: Overexpression of rice gene OsATG8b confers tolerance to nitrogen starvation and increases yield and nitrogen use efficiency (NUE) in Arabidopsis publication-title: PloS One doi: 10.1371/journal.pone.0223011 – volume: 14 year: 2023 ident: B86 article-title: CRISPR/Cas9-mediated mutagenesis of the susceptibility gene OsHPP04 in rice confers enhanced resistance to rice root-knot nematode publication-title: Front. Plant Sci. doi: 10.3389/fpls.2023.1134653 – volume: 9 start-page: 1 year: 2020 ident: B163 article-title: Genome-wide association analysis identifies resistance loci for bacterial leaf streak resistance in rice (Oryza sativa L.) publication-title: Plants doi: 10.3390/plants9121673 – volume: 103 start-page: 7 year: 2020 ident: B103 article-title: Concurrent activation of OsAMT1; 2 and OsGOGAT1 in rice leads to enhanced nitrogen use efficiency under nitrogen limitation publication-title: Plant J. doi: 10.1111/tpj.14794 – volume: 8 start-page: 1 year: 2018 ident: B58 article-title: The energy sensor OsSnRK1a confers broad-spectrum disease resistance in rice publication-title: Sci. Rep. doi: 10.1038/s41598–018-22101–6 – volume: 64 start-page: 756 year: 2022 ident: B94 article-title: CRISPR/Cas9 gene editing and natural variation analysis demonstrate the potential for HvARE1 in improvement of nitrogen use efficiency in barley publication-title: J. Integr. Plant Biol. doi: 10.1111/jipb.13214 – volume: 488 start-page: 86 year: 2012 ident: B124 article-title: Defining the core Arabidopsis thaliana root microbiome publication-title: Nature doi: 10.1038/nature11237 – volume: 28 start-page: 431 year: 2009 ident: B99 article-title: Rice OsACDR1 (Oryza sativa accelerated cell death and resistance 1) is a potential positive regulator of fungal disease resistance publication-title: Mol. Cells doi: 10.1007/s10059-009-0161-5 – volume: 6 start-page: 722 year: 2008 ident: B169 article-title: Genetic engineering of improved nitrogen use efficiency in rice by the tissue-specific expression of alanine aminotransferase publication-title: Plant Biotechnol. J. doi: 10.1111/j.1467-7652.2008.00351.x – volume: 28 start-page: 1510 year: 2016 ident: B4 article-title: Advancing crop transformation in the era of genome editing publication-title: Plant Cell doi: 10.1105/tpc.16.00196 – volume: 23 start-page: 29 year: 2010 ident: B104 article-title: Single nucleotide polymorphisms in a gene for translation initiation factor (eIF4G) of rice (Oryza sativa) associated with resistance to rice tungro spherical virus publication-title: Mol. Plant-Microbe Interact. doi: 10.1094/MPMI-23-1-0029 – volume: 30 start-page: 385 year: 2017 ident: B146 article-title: Two NRAMP6 isoforms function as iron and manganese transporters and contribute to disease resistance in rice publication-title: Mol. Plant-Microbe Interact. doi: 10.1094/MPMI-01-17-0005-R – volume: 11 start-page: 446 year: 2013 ident: B55 article-title: Altered expression of the PTR/NRT1 homologue OsPTR9 affects nitrogen utilization efficiency, growth and grain yield in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.12031 – volume: 14 start-page: 1705 year: 2016 ident: B33 article-title: Agronomic nitrogen-use efficiency of rice can be increased by driving OsNRT2.1 expression with the OsNAR2.1 promoter publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.12531 – volume: 7 start-page: 44641 year: 2017 ident: B47 article-title: Root biomass and exudates link plant diversity with soil bacterial and fungal biomass publication-title: Sci. Rep. doi: 10.1038/srep44641 – volume: 7 start-page: 81 year: 1996 ident: B77 article-title: Conceptual framework for the transition from conventional to sustainable agriculture publication-title: J. Sustain. Agric. doi: 10.1300/J064v07n01_07 – volume: 70 start-page: 1927 year: 2019 ident: B101 article-title: Editing of the OsACS locus alters phosphate deficiency-induced adaptive responses in rice seedlings publication-title: J. Exp. Bot. doi: 10.1093/jxb/erz074 – volume: 71 start-page: 699 year: 2020 ident: B73 article-title: A role for the OsHKT 2;1 sodium transporter in potassium use efficiency in rice publication-title: J. Exp. Bot. doi: 10.1093/jxb/erz113 – volume: 12 start-page: 1 year: 2022 ident: B102 article-title: A novel locus for bakanae disease resistance, qBK4T, identified in rice publication-title: Agronomy doi: 10.3390/agronomy12102567 – volume: 107 start-page: 442 year: 2015 ident: B41 article-title: Rice water use efficiency and yield under continuous and intermittent irrigation publication-title: Agron. J. doi: 10.2134/agronj14.0080 – volume: 4 start-page: 1 year: 2021 ident: B19 article-title: Features and applications of haplotypes in crop breeding publication-title: Commun. Biol. doi: 10.1038/s42003-021-02782-y – volume: 227 start-page: 1 year: 2014 ident: B53 article-title: Over-expression of OsPTR6 in rice increased plant growth at different nitrogen supplies but decreased nitrogen use efficiency at high ammonium supply publication-title: Plant Sci. doi: 10.1016/j.plantsci.2014.05.013 – volume: 11 start-page: 1 year: 2020 ident: B63 article-title: MYB61 is regulated by GRF4 and promotes nitrogen utilization and biomass production in rice publication-title: Nat. Commun. doi: 10.1038/s41467-020-19019-x – volume: 71 start-page: 6032 year: 2020 ident: B3 article-title: Rice NIN-LIKE PROTEIN 1 rapidly responds to nitrogen deficiency and improves yield and nitrogen use efficiency publication-title: J. Exp. Bot. doi: 10.1093/jxb/eraa292 – volume: 169 start-page: 259 year: 2021 ident: B214 article-title: Increased glutamine synthetase by overexpression of TaGS1 improves grain yield and nitrogen use efficiency in rice publication-title: Plant Physiol. Biochem. doi: 10.1016/j.plaphy.2021.11.021 – volume: 169 start-page: 2935 year: 2015 ident: B97 article-title: OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice publication-title: Plant Physiol. doi: 10.1104/pp.15.01192 – volume: 15 start-page: 1 year: 2020 ident: B10 article-title: Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping publication-title: PloS One doi: 10.1371/journal.pone.0228118 – volume: 96 start-page: 65 year: 2019 ident: B21 article-title: Improving plant-resistance to insect-pests and pathogens: The new opportunities through targeted genome editing publication-title: Semin. Cell Dev. Biol. doi: 10.1016/j.semcdb.2019.04.008 – volume: 9 start-page: 1 year: 2022 ident: B122 article-title: Global data on fertilizer use by crop and by country publication-title: Sci. Data doi: 10.1038/s41597-022-01592-z – volume: 10 start-page: 5279 year: 2019 ident: B181 article-title: Genome-wide associated study identifies NAC42-activated nitrate transporter conferring high nitrogen use efficiency in rice publication-title: Nat. Commun. doi: 10.1038/s41467-019-13187-1 – volume: 248 start-page: 185 year: 2018 ident: B247 article-title: Nitrate inhibits the remobilization of cell wall phosphorus under phosphorus-starvation conditions in rice (Oryza sativa) publication-title: Planta doi: 10.1007/s00425-018-2892-z – volume: 39 start-page: 2440 year: 2016 ident: B133 article-title: Activation tagging in indica rice identifies ribosomal proteins as potential targets for manipulation of water-use efficiency and abiotic stress tolerance in plants publication-title: Plant Cell Environ. doi: 10.1111/pce.12796 – volume: 163 start-page: 323 year: 2008 ident: B213 article-title: Developments in breeding cereals for organic agriculture publication-title: Euphytica doi: 10.1007/s10681-008-9690-9 – volume: 17 start-page: 322 year: 2019 ident: B75 article-title: Influence of isopropylmalate synthase OsIPMS1 on seed vigour associated with amino acid and energy metabolism in rice publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.12979 – volume: 19 start-page: 1553 year: 2021 ident: B202 article-title: Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study publication-title: Plant Biotechnol. J. doi: 10.1111/pbi.13569 – volume: 21 start-page: 3185 year: 2022 ident: B85 article-title: dep1 improves rice grain yield and nitrogen use efficiency simultaneously by enhancing nitrogen and dry matter translocation publication-title: J. Integr. Agric. doi: 10.1016/j.jia.2022.07.057 – volume: 127 start-page: 1053 year: 2023 ident: B141 article-title: Long-term impact of pulses crop rotation on soil fungal diversity in aerobic and wetland rice cultivation publication-title: Fungal Biol. doi: 10.1016/j.funbio.2023.04.005 – volume: 40 start-page: 358 year: 2000 ident: B93 article-title: Variation among maize inbred lines and detection of quantitative trait loci for growth at low phosphorus and responsiveness to arbuscular mycorrhizal fungi publication-title: Crop Sci. doi: 10.2135/cropsci2000.402358x – volume: 41 start-page: 2731 year: 2018 ident: B199 article-title: Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice publication-title: Plant Cell Environ. doi: 10.1111/pce.13400 – volume: 107 start-page: 89 year: 2008 ident: B40 article-title: Characterizing nitrogen use efficiency in natural and agricultural ecosystems to improve the performance of cereal crops in low-input and organic agricultural systems publication-title: Field Crops Res. doi: 10.1016/j.fcr.2008.01.001 – volume: 27 start-page: 1134 year: 2022 ident: B138 article-title: Breeding toward improved ecological plant–microbiome interactions publication-title: Trends Plant Sci. doi: 10.1016/j.tplants.2022.06.004 – volume: 109 start-page: 415 year: 2022 ident: B127 article-title: Harnessing root architecture to address global challenges publication-title: Plant J. doi: 10.1111/tpj.15560 – volume: 9 start-page: 1 year: 2019 ident: B155 article-title: Genomic selection in cereal breeding publication-title: Agronomy doi: 10.3390/agronomy9020095 – volume: 14 start-page: 1012 year: 2021 ident: B203 article-title: The Ghd7 transcription factor represses ARE1 expression to enhance nitrogen utilization and grain yield in rice publication-title: Mol. Plant doi: 10.1016/j.molp.2021.04.012 – volume: 60 start-page: 1815 year: 1996 ident: B170 article-title: Genotypic variation in promotion of rice dinitrogen fixation as determined by nitrogen-15 dilution publication-title: Soil Sci. Soc. America J. doi: 10.2136/sssaj1996.03615995006000060029x – volume: 15 start-page: 1 year: 2014 ident: B196 article-title: Identification of quantitative trait loci for phosphorus use efficiency traits in rice using a high density SNP map publication-title: BMC Genet. doi: 10.1186/s12863-014-0155-y – volume: 53 start-page: 271 year: 2013 ident: B222 article-title: An improved crop management increases grain yield and nitrogen and water use efficiency in rice publication-title: Crop Sci. doi: 10.2135/cropsci2012.06.0360 – volume: 9 start-page: 669 year: 2021 ident: B219 article-title: Genomic selection: A breakthrough technology in rice breeding publication-title: Crop J. doi: 10.1016/j.cj.2021.03.008 – volume: 199 start-page: 81 year: 2014 ident: B135 article-title: Refining breeding methods for organic and low-input agriculture: Analysis of an international winter wheat ring test publication-title: Euphytica doi: 10.1007/s10681-014-1169-2 – volume: 1666 start-page: 485 year: 2017 ident: B177 article-title: Multi-SNP haplotype analysis methods for association analysis publication-title: Stat. Hum. Genet.: Methods Protoc. doi: 10.1007/978-1-4939-7274-6_24 – volume: 488 start-page: 535 year: 2012 ident: B61 article-title: The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency publication-title: Nature doi: 10.1038/nature11346 – volume: 93 start-page: 153 year: 2007 ident: B153 article-title: Weed management in direct-seeded rice publication-title: Adv. Agron. doi: 10.1016/S0065-2113(06)93004-1 – volume: 9 start-page: 1 year: 2016 ident: B244 article-title: A genome-wide association study of field resistance to magnaporthe oryzae in rice publication-title: Rice doi: 10.1186/s12284-016-0116-3 – volume: 3 start-page: 148 year: 2019 ident: B51 article-title: Identification and characterization of the core rice seed microbiome publication-title: Phytobiomes J. doi: 10.1094/PBIOMES-01-19-0009-R – volume: 4 year: 2021 ident: B67 article-title: PGPR mediated alterations in root traits: way toward sustainable crop production publication-title: Front. Sustain Food Syst. doi: 10.3389/fsufs.2020.618230 – volume: 12 start-page: 1 year: 2019 ident: B57 article-title: Identification of new rice cultivars and resistance loci against rice black-streaked dwarf virus disease through genome-wide association study publication-title: Rice doi: 10.1186/s12284-019-0310-1 – volume: 228 start-page: 1 year: 2020 ident: B207 article-title: Water-saving irrigation is a ‘win-win’ management strategy in rice paddies – With both reduced greenhouse gas emissions and enhanced water use efficiency publication-title: Agric. Water Manag doi: 10.1016/j.agwat.2019.105889 – start-page: 976 volume-title: Contribution of working group II to the fourth assessment report of the intergovernmental panel on climate change year: 2007 ident: B88 article-title: Climate change 2007: Impacts, adaptation and vulnerability – start-page: 50 volume-title: Sustainable agricultural systems year: 2020 ident: B142 article-title: Sustainable agriculture in the United States doi: 10.1201/9781003070474-5 – volume: 238 start-page: 1146 year: 2023 ident: B64 article-title: RRS1 shapes robust root system to enhance drought resistance in rice publication-title: New Phytol. doi: 10.1111/nph.18775 – volume-title: Emissions due to agriculture. global, regional and country trends 2000–2018 year: 2020 ident: B56 – volume: 91 start-page: 1177 year: 1995 ident: B215 article-title: Molecular-marker-facilitated investigation on the ability to stimulate N 2 fixation in the rhizosphere by irrigated rice plants publication-title: Theor. Appl. Genet. doi: 10.1007/BF00220926 – volume: 150 start-page: 308 year: 2009 ident: B223 article-title: Suppression of a phospholipase d gene, ospldb1, activates defense responses and increases disease resistance in rice publication-title: Plant Physiol. doi: 10.1104/pp.108.131979 – volume: 24 start-page: 689 year: 2022 ident: B193 article-title: Functional characterization of a high-affinity iron transporter (PiFTR) from the endophytic fungus Piriformospora indica and its role in plant growth and development publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.15659 |
| SSID | ssj0000500997 |
| Score | 2.4069152 |
| SecondaryResourceType | review_article |
| Snippet | A low-input-based farming system can reduce the adverse effects of modern agriculture through proper utilization of natural resources. Modern varieties often... |
| SourceID | doaj pubmedcentral proquest pubmed crossref |
| SourceType | Open Website Open Access Repository Aggregation Database Index Database Enrichment Source |
| StartPage | 1408356 |
| SubjectTerms | genomic selection genomics high-throughput phenotyping low-input agriculture organic rice Plant Science sustainability |
| SummonAdditionalLinks | – databaseName: DOAJ Directory of Open Access Journals dbid: DOA link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1LS8NAEF5EPHgR38YXEQRBCE2afeVoxVI8eBALvS371EJJS20R_70zSVpaEb14ySHZkOGb7M43mcm3hFwzZriW1CbaG55QJk1S2BwO3DEr04BfHbDb4on3-vRxwAYrW31hT1gtD1wD13LeSedthkp2VFuUL8udzmiQqc8LX_26BzFvJZmqVb2R-oi6jAlZWNEKkxGqc7cprA1IO_haIKr0-n8imd97JVeCT3eX7DSsMb6rrd0jG77cJ1udMTC7zwNy8wyzPYbctgpEMdDQeDT-iIflZD6L9eu0kdfwh6TffXi57yXNBgiJpZzPEpc7AQmYC4YZ0ZaZdkC-pBepZz6I4FmQkqPkFwTd1BrnUy1EYTQXgeJMzo_IZjku_QmJC6QWmQYgdY4i84CjkZB6Bea5o6mNSLpAQ9lGHRw3qRgpyBIQQIUAKgRQNQBG5HZ5y6SWxvhtcAchXg5EVevqBPhaNb5Wf_k6IlcLBymYBVja0KUfz98VrFRccGSDETmuHbZ8FNgjaCGziMg1V67Zsn6lHL5VStsZ1h0BytP_sP6MbCMi2GfWzs7J5mw69xfAaGbmsnp5vwBiCPKb priority: 102 providerName: Directory of Open Access Journals |
| Title | Rice breeding for low input agriculture |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/38974981 https://www.proquest.com/docview/3076765456 https://pubmed.ncbi.nlm.nih.gov/PMC11224470 https://doaj.org/article/ded8dec127444ac99543da14f80e39e9 |
| Volume | 15 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1La9tAEB4SN4dcSh9pqj6CCoVCQY1k7UuHUprSNASSQ6jBt2WfTsBIrmPT-t93RpJNXUyhF4GklbT6dmfnm93lG4C3nFthFHOZCVZkjCubVa7Eg_DcqTzSrAPttrgWFyN2OebjPVint-oBvN8Z2lE-qdF8-uHXj9UnNPiPFHGivz2NsykJbw8Zmj0xCrEPD9AxSUpocNWz_U7qm_hQm25FCJYxMRx365y737LlqVpB_10s9O_NlH94p_NH8LCnlennrh88hr1QP4GDswap3-opvLvB4SDF4Lf1VCny1HTa_Ezv6tlykZrJvNffCEcwOv_6_ctF1mdIyBwTYpH50kuM0Hy03MqhKoxHdqaCzAMPUcbAo1KCNMHQK-fO-pAbKStrhIyMTL18BoO6qcNzSCviHoUJrjAlqdBXFbcKY7PIg_AsdwnkazS06-XDKYvFVGMYQQBqAlATgLoHMIH3m0dmnXbGvwqfEcSbgiR73V5o5hPdW5H2wSuPVSRZQ2YcadmV3hQsqjyUVagSeLNuII1mQmsfpg7N8l7jUCakILqYwHHXYJtPYX0kq1SRgNpqyq26bN-p725bKe6CFiYRyhf_86sv4ZBOacPZsHgFg8V8GV4jtVnYk3ZKAI_fxsVJ23l_A9Wt9TY |
| linkProvider | Scholars Portal |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Rice+breeding+for+low+input+agriculture&rft.jtitle=Frontiers+in+plant+science&rft.au=Jyoti%2C+Subroto+Das&rft.au=Singh%2C+Gurjeet&rft.au=Pradhan%2C+Anjan+Kumar&rft.au=Tarpley%2C+Lee&rft.date=2024-06-21&rft.issn=1664-462X&rft.eissn=1664-462X&rft.volume=15&rft_id=info:doi/10.3389%2Ffpls.2024.1408356&rft.externalDBID=n%2Fa&rft.externalDocID=10_3389_fpls_2024_1408356 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1664-462X&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1664-462X&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1664-462X&client=summon |