Integrated analysis of miRNAome transcriptome and degradome reveals miRNA-target modules governing floral florescence development and senescence across early- and late-flowering genotypes in tree peony
As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target gen...
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| Published in | Frontiers in plant science Vol. 13; p. 1082415 |
|---|---|
| Main Authors | , , , , , , , |
| Format | Journal Article |
| Language | English |
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Frontiers Media S.A
14.12.2022
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| Abstract | As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target genes engaged in tree peony floral florescence, development and senescence remain unknown. This report presents the integrated analysis of the miRNAome, transcriptome and degradome of tree peony petals collected from blooming, initial flowering, full blooming and decay stages in early-flowering variety
Paeonia ostii
‘Fengdan’, an early-flowering mutant line of
Paeonia ostii
‘Fengdan’ and late-flowering variety
Paeonia suffruticosa
‘Lianhe’. Transcriptome analysis revealed a transcript (
‘psu.G.00014095’
) which was annotated as a xyloglucan endotransglycosylase/hydrolase precursor
XTH-25
and found to be differentially expressed across flower developmental stages in
Paeonia ostii
‘Fengdan’ and
Paeonia suffruticosa
‘Lianhe’. The miRNA-mRNA modules were presented significant enrichment in various pathways such as plant hormone signal transduction, indole alkaloid biosynthesis, arachidonic acid metabolism, folate biosynthesis, fatty acid elongation, and the MAPK signaling pathway. Multiple miRNA-mRNA-TF modules demonstrated the potential functions of
MYB
-related,
bHLH
,
Trihelix
,
NAC
,
GRAS
and
HD-ZIP
TF families in floral florescence, development, and senescence of tree peony. Comparative spatio-temporal expression investigation of eight floral-favored miRNA-target modules suggested that transcript ‘
psu.T.00024044
’ and microRNA
mtr-miR166g-5p
are involved in the floral florescence, development and senescence associated agronomic traits of tree peony. The results might accelerate the understanding of the potential regulation mechanism in regards to floral florescence, development and abscission, and supply guidance for tree peony breeding of varieties with later and longer florescence characteristics. |
|---|---|
| AbstractList | As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target genes engaged in tree peony floral florescence, development and senescence remain unknown. This report presents the integrated analysis of the miRNAome, transcriptome and degradome of tree peony petals collected from blooming, initial flowering, full blooming and decay stages in early-flowering variety
Paeonia ostii
‘Fengdan’, an early-flowering mutant line of
Paeonia ostii
‘Fengdan’ and late-flowering variety
Paeonia suffruticosa
‘Lianhe’. Transcriptome analysis revealed a transcript (
‘psu.G.00014095’
) which was annotated as a xyloglucan endotransglycosylase/hydrolase precursor
XTH-25
and found to be differentially expressed across flower developmental stages in
Paeonia ostii
‘Fengdan’ and
Paeonia suffruticosa
‘Lianhe’. The miRNA-mRNA modules were presented significant enrichment in various pathways such as plant hormone signal transduction, indole alkaloid biosynthesis, arachidonic acid metabolism, folate biosynthesis, fatty acid elongation, and the MAPK signaling pathway. Multiple miRNA-mRNA-TF modules demonstrated the potential functions of
MYB
-related,
bHLH
,
Trihelix
,
NAC
,
GRAS
and
HD-ZIP
TF families in floral florescence, development, and senescence of tree peony. Comparative spatio-temporal expression investigation of eight floral-favored miRNA-target modules suggested that transcript ‘
psu.T.00024044
’ and microRNA
mtr-miR166g-5p
are involved in the floral florescence, development and senescence associated agronomic traits of tree peony. The results might accelerate the understanding of the potential regulation mechanism in regards to floral florescence, development and abscission, and supply guidance for tree peony breeding of varieties with later and longer florescence characteristics. As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target genes engaged in tree peony floral florescence, development and senescence remain unknown. This report presents the integrated analysis of the miRNAome, transcriptome and degradome of tree peony petals collected from blooming, initial flowering, full blooming and decay stages in early-flowering variety Paeonia ostii 'Fengdan', an early-flowering mutant line of Paeonia ostii 'Fengdan' and late-flowering variety Paeonia suffruticosa 'Lianhe'. Transcriptome analysis revealed a transcript ('psu.G.00014095') which was annotated as a xyloglucan endotransglycosylase/hydrolase precursor XTH-25 and found to be differentially expressed across flower developmental stages in Paeonia ostii 'Fengdan' and Paeonia suffruticosa 'Lianhe'. The miRNA-mRNA modules were presented significant enrichment in various pathways such as plant hormone signal transduction, indole alkaloid biosynthesis, arachidonic acid metabolism, folate biosynthesis, fatty acid elongation, and the MAPK signaling pathway. Multiple miRNA-mRNA-TF modules demonstrated the potential functions of MYB-related, bHLH, Trihelix, NAC, GRAS and HD-ZIP TF families in floral florescence, development, and senescence of tree peony. Comparative spatio-temporal expression investigation of eight floral-favored miRNA-target modules suggested that transcript 'psu.T.00024044' and microRNA mtr-miR166g-5p are involved in the floral florescence, development and senescence associated agronomic traits of tree peony. The results might accelerate the understanding of the potential regulation mechanism in regards to floral florescence, development and abscission, and supply guidance for tree peony breeding of varieties with later and longer florescence characteristics.As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target genes engaged in tree peony floral florescence, development and senescence remain unknown. This report presents the integrated analysis of the miRNAome, transcriptome and degradome of tree peony petals collected from blooming, initial flowering, full blooming and decay stages in early-flowering variety Paeonia ostii 'Fengdan', an early-flowering mutant line of Paeonia ostii 'Fengdan' and late-flowering variety Paeonia suffruticosa 'Lianhe'. Transcriptome analysis revealed a transcript ('psu.G.00014095') which was annotated as a xyloglucan endotransglycosylase/hydrolase precursor XTH-25 and found to be differentially expressed across flower developmental stages in Paeonia ostii 'Fengdan' and Paeonia suffruticosa 'Lianhe'. The miRNA-mRNA modules were presented significant enrichment in various pathways such as plant hormone signal transduction, indole alkaloid biosynthesis, arachidonic acid metabolism, folate biosynthesis, fatty acid elongation, and the MAPK signaling pathway. Multiple miRNA-mRNA-TF modules demonstrated the potential functions of MYB-related, bHLH, Trihelix, NAC, GRAS and HD-ZIP TF families in floral florescence, development, and senescence of tree peony. Comparative spatio-temporal expression investigation of eight floral-favored miRNA-target modules suggested that transcript 'psu.T.00024044' and microRNA mtr-miR166g-5p are involved in the floral florescence, development and senescence associated agronomic traits of tree peony. The results might accelerate the understanding of the potential regulation mechanism in regards to floral florescence, development and abscission, and supply guidance for tree peony breeding of varieties with later and longer florescence characteristics. As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target genes engaged in tree peony floral florescence, development and senescence remain unknown. This report presents the integrated analysis of the miRNAome, transcriptome and degradome of tree peony petals collected from blooming, initial flowering, full blooming and decay stages in early-flowering variety 'Fengdan', an early-flowering mutant line of 'Fengdan' and late-flowering variety 'Lianhe'. Transcriptome analysis revealed a transcript ( ) which was annotated as a xyloglucan endotransglycosylase/hydrolase precursor and found to be differentially expressed across flower developmental stages in 'Fengdan' and 'Lianhe'. The miRNA-mRNA modules were presented significant enrichment in various pathways such as plant hormone signal transduction, indole alkaloid biosynthesis, arachidonic acid metabolism, folate biosynthesis, fatty acid elongation, and the MAPK signaling pathway. Multiple miRNA-mRNA-TF modules demonstrated the potential functions of -related, , , , and TF families in floral florescence, development, and senescence of tree peony. Comparative spatio-temporal expression investigation of eight floral-favored miRNA-target modules suggested that transcript ' ' and microRNA are involved in the floral florescence, development and senescence associated agronomic traits of tree peony. The results might accelerate the understanding of the potential regulation mechanism in regards to floral florescence, development and abscission, and supply guidance for tree peony breeding of varieties with later and longer florescence characteristics. As a candidate national flower of China, tree peony has extremely high ornamental, medicinal and oil value. However, the short florescence and rarity of early-flowering and late-flowering varieties restrict further improvement of the economic value of tree peony. Specific miRNAs and their target genes engaged in tree peony floral florescence, development and senescence remain unknown. This report presents the integrated analysis of the miRNAome, transcriptome and degradome of tree peony petals collected from blooming, initial flowering, full blooming and decay stages in early-flowering variety Paeonia ostii ‘Fengdan’, an early-flowering mutant line of Paeonia ostii ‘Fengdan’ and late-flowering variety Paeonia suffruticosa ‘Lianhe’. Transcriptome analysis revealed a transcript (‘psu.G.00014095’) which was annotated as a xyloglucan endotransglycosylase/hydrolase precursor XTH-25 and found to be differentially expressed across flower developmental stages in Paeonia ostii ‘Fengdan’ and Paeonia suffruticosa ‘Lianhe’. The miRNA-mRNA modules were presented significant enrichment in various pathways such as plant hormone signal transduction, indole alkaloid biosynthesis, arachidonic acid metabolism, folate biosynthesis, fatty acid elongation, and the MAPK signaling pathway. Multiple miRNA-mRNA-TF modules demonstrated the potential functions of MYB-related, bHLH, Trihelix, NAC, GRAS and HD-ZIP TF families in floral florescence, development, and senescence of tree peony. Comparative spatio-temporal expression investigation of eight floral-favored miRNA-target modules suggested that transcript ‘psu.T.00024044’ and microRNA mtr-miR166g-5p are involved in the floral florescence, development and senescence associated agronomic traits of tree peony. The results might accelerate the understanding of the potential regulation mechanism in regards to floral florescence, development and abscission, and supply guidance for tree peony breeding of varieties with later and longer florescence characteristics. |
| Author | Zhang, Chenjie Wang, Zhanying Li, Yuying Zhang, Xiuxin Yin, Weinlun Guo, Lili Hou, Xiaogai Carlson, John E. |
| AuthorAffiliation | 3 Department of Ecosystem Science and Management, Pennsylvania State University , University Park, PA , United States 4 College of Biological Sciences and Technology, Beijing Forestry University , Beijing , China 5 Center of Peony, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science , Beijing , China 1 College of Tree Peony, Henan University of Science and Technology , Luoyang, Henan , China 2 Department of Horticulture, Luoyang Academy of Agricultural and Forestry Sciences , Luoyang, Henan , China |
| AuthorAffiliation_xml | – name: 2 Department of Horticulture, Luoyang Academy of Agricultural and Forestry Sciences , Luoyang, Henan , China – name: 5 Center of Peony, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science , Beijing , China – name: 3 Department of Ecosystem Science and Management, Pennsylvania State University , University Park, PA , United States – name: 4 College of Biological Sciences and Technology, Beijing Forestry University , Beijing , China – name: 1 College of Tree Peony, Henan University of Science and Technology , Luoyang, Henan , China |
| Author_xml | – sequence: 1 givenname: Lili surname: Guo fullname: Guo, Lili – sequence: 2 givenname: Yuying surname: Li fullname: Li, Yuying – sequence: 3 givenname: Chenjie surname: Zhang fullname: Zhang, Chenjie – sequence: 4 givenname: Zhanying surname: Wang fullname: Wang, Zhanying – sequence: 5 givenname: John E. surname: Carlson fullname: Carlson, John E. – sequence: 6 givenname: Weinlun surname: Yin fullname: Yin, Weinlun – sequence: 7 givenname: Xiuxin surname: Zhang fullname: Zhang, Xiuxin – sequence: 8 givenname: Xiaogai surname: Hou fullname: Hou, Xiaogai |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/36589111$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1007_s11105_024_01475_0 crossref_primary_10_1016_j_plaphy_2023_107857 crossref_primary_10_3390_horticulturae9020148 crossref_primary_10_1093_hr_uhae344 crossref_primary_10_3389_fpls_2024_1467596 crossref_primary_10_3389_fpls_2023_1095967 |
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| ContentType | Journal Article |
| Copyright | Copyright © 2022 Guo, Li, Zhang, Wang, Carlson, Yin, Zhang and Hou. Copyright © 2022 Guo, Li, Zhang, Wang, Carlson, Yin, Zhang and Hou 2022 Guo, Li, Zhang, Wang, Carlson, Yin, Zhang and Hou |
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| Keywords | senescence tree peony floral development miRNA-target modules florescence |
| Language | English |
| License | Copyright © 2022 Guo, Li, Zhang, Wang, Carlson, Yin, Zhang and Hou. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 This article was submitted to Plant Bioinformatics, a section of the journal Frontiers in Plant Science Reviewed by: Qianqian Shi, Northwest A&F University, China; Shiping Cheng, Pingdingshan University, China Edited by: Hui Song, Qingdao Agricultural University, China |
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| Title | Integrated analysis of miRNAome transcriptome and degradome reveals miRNA-target modules governing floral florescence development and senescence across early- and late-flowering genotypes in tree peony |
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