Comparing the Bacterial Community in the Gastrointestinal Tracts Between Growth-Retarded and Normal Yaks on the Qinghai-Tibetan Plateau
In ruminants, the bacterial community in the gastrointestinal tract (GIT) has an essential role in healthy growth. Examining the bacterial composition in the GIT between growth-retarded and normal yaks could improve our understanding of the role of microorganisms in yaks with growth retardation. In...
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| Published in | Frontiers in microbiology Vol. 11; p. 600516 |
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| Main Authors | , , , , , , , , , , , , , |
| Format | Journal Article |
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18.12.2020
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| Abstract | In ruminants, the bacterial community in the gastrointestinal tract (GIT) has an essential role in healthy growth. Examining the bacterial composition in the GIT between growth-retarded and normal yaks could improve our understanding of the role of microorganisms in yaks with growth retardation. In this study, eight male yaks with growth retardation were used as the growth-retarded yak (GRY) group, and another eight male growth normal yaks (GNYs) with the same breed and age were used as the GNY group. We compared the bacterial community in the rumen, duodenum, jejunum, ileum, cecum, and colon between GRY and GNY groups based on the 16S ribosomal RNA gene sequencing. Alpha-diversity revealed that the Shannon index in the duodenum and ileum of the GNY group was higher (
< 0.05) than that of the GRY group. However, the opposite trend was found in the jejunum and cecum. The principal coordinates analysis (PCoA) showed that the bacterial structure in all segments of GIT differed from each other between two groups. In the rumen, the relative abundances of
group,
, and
were higher (
< 0.05) in the GNY group as compared with the GRY group. However, the
group exhibited an opposite trend. In the jejunum, compared with the GNY group, the
was enriched significantly (
< 0.05) in the GRY group. However, the
,
group, and
group were enriched (
< 0.05) in the GNY group. In the ileum, the relative abundances of
group and
were higher (
< 0.05) in the GNY group than those in the GRY group. In the cecum, the GNY group showed a higher (
< 0.05) relative abundance of
as compared with the GRY group. In the colon, the relative abundances of
and
were slightly higher (0.05 <
< 0.10) in the GNY group than those in the GRY group. Overall, these results improve our knowledge about the bacterial composition in the GIT of growth-retarded and normal yaks, and regulating the bacterial community may be an effective solution to promote the compensatory growth of GRYs. |
|---|---|
| AbstractList | In ruminants, the bacterial community in the gastrointestinal tract (GIT) has an essential role in healthy growth. Examining the bacterial composition in the GIT between growth-retarded and normal yaks could improve our understanding of the role of microorganisms in yaks with growth retardation. In this study, eight male yaks with growth retardation were used as the growth-retarded yak (GRY) group, and another eight male growth normal yaks (GNYs) with the same breed and age were used as the GNY group. We compared the bacterial community in the rumen, duodenum, jejunum, ileum, cecum, and colon between GRY and GNY groups based on the 16S ribosomal RNA gene sequencing. Alpha-diversity revealed that the Shannon index in the duodenum and ileum of the GNY group was higher (
< 0.05) than that of the GRY group. However, the opposite trend was found in the jejunum and cecum. The principal coordinates analysis (PCoA) showed that the bacterial structure in all segments of GIT differed from each other between two groups. In the rumen, the relative abundances of
group,
, and
were higher (
< 0.05) in the GNY group as compared with the GRY group. However, the
group exhibited an opposite trend. In the jejunum, compared with the GNY group, the
was enriched significantly (
< 0.05) in the GRY group. However, the
,
group, and
group were enriched (
< 0.05) in the GNY group. In the ileum, the relative abundances of
group and
were higher (
< 0.05) in the GNY group than those in the GRY group. In the cecum, the GNY group showed a higher (
< 0.05) relative abundance of
as compared with the GRY group. In the colon, the relative abundances of
and
were slightly higher (0.05 <
< 0.10) in the GNY group than those in the GRY group. Overall, these results improve our knowledge about the bacterial composition in the GIT of growth-retarded and normal yaks, and regulating the bacterial community may be an effective solution to promote the compensatory growth of GRYs. In ruminants, the bacterial community in the gastrointestinal tract (GIT) has an essential role in healthy growth. Examining the bacterial composition in the GIT between growth-retarded and normal yaks could improve our understanding of the role of microorganisms in yaks with growth retardation. In this study, eight male yaks with growth retardation were used as the growth-retarded yak (GRY) group, and another eight male growth normal yaks (GNYs) with the same breed and age were used as the GNY group. We compared the bacterial community in the rumen, duodenum, jejunum, ileum, cecum, and colon between GRY and GNY groups based on the 16S ribosomal RNA gene sequencing. Alpha-diversity revealed that the Shannon index in the duodenum and ileum of the GNY group was higher (P < 0.05) than that of the GRY group. However, the opposite trend was found in the jejunum and cecum. The principal coordinates analysis (PCoA) showed that the bacterial structure in all segments of GIT differed from each other between two groups. In the rumen, the relative abundances of Ruminococcaceae NK4A214 group, Ruminococcaceae UCG-014, and Treponema 2 were higher (P < 0.05) in the GNY group as compared with the GRY group. However, the Christensenellaceae R-7 group exhibited an opposite trend. In the jejunum, compared with the GNY group, the unclassified Chitinophagaceae was enriched significantly (P < 0.05) in the GRY group. However, the unclassified Peptostreptococcaceae, Christensenellaceae R-7 group, and Lachnospiraceae NK3A20 group were enriched (P < 0.05) in the GNY group. In the ileum, the relative abundances of the Rikenellaceae RC9 gut group and Prevotellaceae UCG-004 were higher (P < 0.05) in the GNY group than those in the GRY group. In the cecum, the GNY group showed a higher (P < 0.05) relative abundance of Prevotellaceae UCG-003 as compared with the GRY group. In the colon, the relative abundances of Treponema 2 and unclassified Lachnospiraceae were slightly higher (0.05 < P < 0.10) in the GNY group than those in the GRY group. Overall, these results improve our knowledge about the bacterial composition in the GIT of growth-retarded and normal yaks, and regulating the bacterial community may be an effective solution to promote the compensatory growth of GRYs. In ruminants, the bacterial community in the gastrointestinal tract (GIT) has an essential role in healthy growth. Examining the bacterial composition in the GIT between growth-retarded and normal yaks could improve our understanding of the role of microorganisms in yaks with growth retardation. In this study, eight male yaks with growth retardation were used as the growth-retarded yak (GRY) group, and another eight male growth normal yaks (GNYs) with the same breed and age were used as the GNY group. We compared the bacterial community in the rumen, duodenum, jejunum, ileum, cecum, and colon between GRY and GNY groups based on the 16S ribosomal RNA gene sequencing. Alpha-diversity revealed that the Shannon index in the duodenum and ileum of the GNY group was higher ( P < 0.05) than that of the GRY group. However, the opposite trend was found in the jejunum and cecum. The principal coordinates analysis (PCoA) showed that the bacterial structure in all segments of GIT differed from each other between two groups. In the rumen, the relative abundances of Ruminococcaceae NK4A214 group, Ruminococcaceae UCG-014 , and Treponema 2 were higher ( P < 0.05) in the GNY group as compared with the GRY group. However, the Christensenellaceae R-7 group exhibited an opposite trend. In the jejunum, compared with the GNY group, the unclassified Chitinophagaceae was enriched significantly ( P < 0.05) in the GRY group. However, the unclassified Peptostreptococcaceae , Christensenellaceae R-7 group, and Lachnospiraceae NK3A20 group were enriched ( P < 0.05) in the GNY group. In the ileum, the relative abundances of the Rikenellaceae RC9 gut group and Prevotellaceae UCG-004 were higher ( P < 0.05) in the GNY group than those in the GRY group. In the cecum, the GNY group showed a higher ( P < 0.05) relative abundance of Prevotellaceae UCG-003 as compared with the GRY group. In the colon, the relative abundances of Treponema 2 and unclassified Lachnospiraceae were slightly higher (0.05 < P < 0.10) in the GNY group than those in the GRY group. Overall, these results improve our knowledge about the bacterial composition in the GIT of growth-retarded and normal yaks, and regulating the bacterial community may be an effective solution to promote the compensatory growth of GRYs. |
| Author | Zhao, Suonan Peng, Quanhui Ma, Jian Hu, Rui Zou, Huawei Wang, Zhisheng Yu, Xiong Kong, Xiangying Cao, Guang Zhu, Yixiao Xue, Bai Wang, Lizhi Wang, Xueying Shah, Ali Mujtaba |
| AuthorAffiliation | 3 Haibei Demonstration Zone of Plateau Modern Ecological Animal Husbandry Science and Technology , Haibei , China 2 College of Animal Science, Xinjiang Agricultural University , Urumchi , China 1 Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University , Chengdu , China |
| AuthorAffiliation_xml | – name: 2 College of Animal Science, Xinjiang Agricultural University , Urumchi , China – name: 1 Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University , Chengdu , China – name: 3 Haibei Demonstration Zone of Plateau Modern Ecological Animal Husbandry Science and Technology , Haibei , China |
| Author_xml | – sequence: 1 givenname: Jian surname: Ma fullname: Ma, Jian organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 2 givenname: Yixiao surname: Zhu fullname: Zhu, Yixiao organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 3 givenname: Zhisheng surname: Wang fullname: Wang, Zhisheng organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 4 givenname: Xiong surname: Yu fullname: Yu, Xiong organization: College of Animal Science, Xinjiang Agricultural University, Urumchi, China – sequence: 5 givenname: Rui surname: Hu fullname: Hu, Rui organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 6 givenname: Xueying surname: Wang fullname: Wang, Xueying organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 7 givenname: Guang surname: Cao fullname: Cao, Guang organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 8 givenname: Huawei surname: Zou fullname: Zou, Huawei organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 9 givenname: Ali Mujtaba surname: Shah fullname: Shah, Ali Mujtaba organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 10 givenname: Quanhui surname: Peng fullname: Peng, Quanhui organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 11 givenname: Bai surname: Xue fullname: Xue, Bai organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 12 givenname: Lizhi surname: Wang fullname: Wang, Lizhi organization: Low Carbon Breeding Cattle and Safety Production University Key Laboratory of Sichuan Province, Animal Nutrition Institute, Sichuan Agricultural University, Chengdu, China – sequence: 13 givenname: Suonan surname: Zhao fullname: Zhao, Suonan organization: Haibei Demonstration Zone of Plateau Modern Ecological Animal Husbandry Science and Technology, Haibei, China – sequence: 14 givenname: Xiangying surname: Kong fullname: Kong, Xiangying organization: Haibei Demonstration Zone of Plateau Modern Ecological Animal Husbandry Science and Technology, Haibei, China |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33391217$$D View this record in MEDLINE/PubMed |
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| ContentType | Journal Article |
| Copyright | Copyright © 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong. Copyright © 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong. 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong |
| Copyright_xml | – notice: Copyright © 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong. – notice: Copyright © 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong. 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong |
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| Keywords | Qinghai–Tibetan Plateau yak bacterial community growth retardation gastrointestinal tract |
| Language | English |
| License | Copyright © 2020 Ma, Zhu, Wang, Yu, Hu, Wang, Cao, Zou, Shah, Peng, Xue, Wang, Zhao and Kong. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Reviewed by: Jiakui Li, Huazhong Agricultural University, China; Junjun Wang, China Agricultural University, China This article was submitted to Systems Microbiology, a section of the journal Frontiers in Microbiology Edited by: Shyam Sundar Paul, ICAR, India |
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| Title | Comparing the Bacterial Community in the Gastrointestinal Tracts Between Growth-Retarded and Normal Yaks on the Qinghai-Tibetan Plateau |
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