Genetic Differentiation and Origin of Naturalized Rainbow Trout Populations From Southern Chile, Revealed by the mtDNA Control Region Marker
Numerous self-sustaining naturalized or introduced populations of rainbow trout ( ) are widely distributed throughout the freshwaters of southern Chile. In this study, analysis of the mitochondrial DNA control region (CR) marker was conducted to investigate the level of genetic divergence among popu...
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Published in | Frontiers in genetics Vol. 10; p. 1212 |
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Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
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Abstract | Numerous self-sustaining naturalized or introduced populations of rainbow trout (
) are widely distributed throughout the freshwaters of southern Chile. In this study, analysis of the mitochondrial DNA control region (CR) marker was conducted to investigate the level of genetic divergence among populations and their phylogenetic relationships with respect to native lineages. This information provided a framework to interpret the genetic structure and origin that was shaped during historical trout introduction efforts. To this end, we analyzed eleven naturalized populations of lakes and rivers from five basins. The CR marker revealed five haplotypes. The overall haplotype (
) and nucleotide (
) diversities were 0.684 ± 0.030 and 0.00460 ± 0.00012, respectively. Global
was 0.169, with several pairwise
estimates showing significant differences (
< 0.05). The exact test of population differentiation corroborated this result (
< 0.001). Significant geographic structure was found (
< 0.05), with variations explained primarily by differences within populations (61.65%) and among group basins (20.82%). Maximum likelihood phylogenetic analysis resolved two distinct clades with medium bootstrap support when naturalized populations were aligned in conjunction with reference native lineages. The haplotype network revealed a close association between naturalized populations and four main haplotypes representative of three native ecotypes or lineages from western North America (rainbow trout, steelhead trout and redband trout). These results indicate a genetic population structuring for naturalized rainbow trout from southern Chile and an origin probably represented by multiple lineages sources. Thus, mitochondrial DNA data strongly suggest that stocking of rainbow trout from different origins may have occurred during or after the initial introduction efforts. |
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AbstractList | Numerous self-sustaining naturalized or introduced populations of rainbow trout (
Oncorhynchus mykiss
) are widely distributed throughout the freshwaters of southern Chile. In this study, analysis of the mitochondrial DNA control region (CR) marker was conducted to investigate the level of genetic divergence among populations and their phylogenetic relationships with respect to native lineages. This information provided a framework to interpret the genetic structure and origin that was shaped during historical trout introduction efforts. To this end, we analyzed eleven naturalized populations of lakes and rivers from five basins. The CR marker revealed five haplotypes. The overall haplotype (
H
) and nucleotide (
Π
) diversities were 0.684 ± 0.030 and 0.00460 ± 0.00012, respectively. Global
F
ST
was 0.169, with several pairwise
F
ST
estimates showing significant differences (
P
< 0.05). The exact test of population differentiation corroborated this result (
P
< 0.001). Significant geographic structure was found (
P
< 0.05), with variations explained primarily by differences within populations (61.65%) and among group basins (20.82%). Maximum likelihood phylogenetic analysis resolved two distinct clades with medium bootstrap support when naturalized populations were aligned in conjunction with reference native lineages. The haplotype network revealed a close association between naturalized populations and four main haplotypes representative of three native ecotypes or lineages from western North America (rainbow trout, steelhead trout and redband trout). These results indicate a genetic population structuring for naturalized rainbow trout from southern Chile and an origin probably represented by multiple lineages sources. Thus, mitochondrial DNA data strongly suggest that stocking of rainbow trout from different origins may have occurred during or after the initial introduction efforts. Numerous self-sustaining naturalized or introduced populations of rainbow trout ( ) are widely distributed throughout the freshwaters of southern Chile. In this study, analysis of the mitochondrial DNA control region (CR) marker was conducted to investigate the level of genetic divergence among populations and their phylogenetic relationships with respect to native lineages. This information provided a framework to interpret the genetic structure and origin that was shaped during historical trout introduction efforts. To this end, we analyzed eleven naturalized populations of lakes and rivers from five basins. The CR marker revealed five haplotypes. The overall haplotype ( ) and nucleotide ( ) diversities were 0.684 ± 0.030 and 0.00460 ± 0.00012, respectively. Global was 0.169, with several pairwise estimates showing significant differences ( < 0.05). The exact test of population differentiation corroborated this result ( < 0.001). Significant geographic structure was found ( < 0.05), with variations explained primarily by differences within populations (61.65%) and among group basins (20.82%). Maximum likelihood phylogenetic analysis resolved two distinct clades with medium bootstrap support when naturalized populations were aligned in conjunction with reference native lineages. The haplotype network revealed a close association between naturalized populations and four main haplotypes representative of three native ecotypes or lineages from western North America (rainbow trout, steelhead trout and redband trout). These results indicate a genetic population structuring for naturalized rainbow trout from southern Chile and an origin probably represented by multiple lineages sources. Thus, mitochondrial DNA data strongly suggest that stocking of rainbow trout from different origins may have occurred during or after the initial introduction efforts. Numerous self-sustaining naturalized or introduced populations of rainbow trout (Oncorhynchus mykiss) are widely distributed throughout the freshwaters of southern Chile. In this study, analysis of the mitochondrial DNA control region (CR) marker was conducted to investigate the level of genetic divergence among populations and their phylogenetic relationships with respect to native lineages. This information provided a framework to interpret the genetic structure and origin that was shaped during historical trout introduction efforts. To this end, we analyzed eleven naturalized populations of lakes and rivers from five basins. The CR marker revealed five haplotypes. The overall haplotype (H) and nucleotide (Π) diversities were 0.684 ± 0.030 and 0.00460 ± 0.00012, respectively. Global FST was 0.169, with several pairwise FST estimates showing significant differences (P < 0.05). The exact test of population differentiation corroborated this result (P < 0.001). Significant geographic structure was found (P < 0.05), with variations explained primarily by differences within populations (61.65%) and among group basins (20.82%). Maximum likelihood phylogenetic analysis resolved two distinct clades with medium bootstrap support when naturalized populations were aligned in conjunction with reference native lineages. The haplotype network revealed a close association between naturalized populations and four main haplotypes representative of three native ecotypes or lineages from western North America (rainbow trout, steelhead trout and redband trout). These results indicate a genetic population structuring for naturalized rainbow trout from southern Chile and an origin probably represented by multiple lineages sources. Thus, mitochondrial DNA data strongly suggest that stocking of rainbow trout from different origins may have occurred during or after the initial introduction efforts. |
Author | Arriagada, Aldo Carrasco, René Estay, Francisco J Colihueque, Nelson Crespo, Julio E Baessolo, Luisa Canales-Aguirre, Cristian B Marín, Javier |
AuthorAffiliation | 3 Laboratorio de Ciencias Naturales y Sostenibilidad-Programa IBAM, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos , Osorno , Chile 6 Núcleo Milenio de Salmónidos Invasores (INVASAL) , Concepción , Chile 2 Gerencia de Investigación y Desarrollo, Piscícola Huililco Ltda. , Pucón , Chile 7 Programa de Pesca Recreativa, Departamento de Acuicultura y Recursos Agroalimentarios, Universidad de Los Lagos , Osorno , Chile 1 Laboratorio de Biología Molecular y Citogenética, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos , Osorno , Chile 5 Centro i∼mar, Universidad de Los Lagos , Puerto Montt , Chile 4 Colegio Proyección Siglo XXI , Osorno , Chile |
AuthorAffiliation_xml | – name: 2 Gerencia de Investigación y Desarrollo, Piscícola Huililco Ltda. , Pucón , Chile – name: 5 Centro i∼mar, Universidad de Los Lagos , Puerto Montt , Chile – name: 3 Laboratorio de Ciencias Naturales y Sostenibilidad-Programa IBAM, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos , Osorno , Chile – name: 7 Programa de Pesca Recreativa, Departamento de Acuicultura y Recursos Agroalimentarios, Universidad de Los Lagos , Osorno , Chile – name: 4 Colegio Proyección Siglo XXI , Osorno , Chile – name: 6 Núcleo Milenio de Salmónidos Invasores (INVASAL) , Concepción , Chile – name: 1 Laboratorio de Biología Molecular y Citogenética, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos , Osorno , Chile |
Author_xml | – sequence: 1 givenname: Nelson surname: Colihueque fullname: Colihueque, Nelson organization: Laboratorio de Biología Molecular y Citogenética, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, Osorno, Chile – sequence: 2 givenname: Francisco J surname: Estay fullname: Estay, Francisco J organization: Gerencia de Investigación y Desarrollo, Piscícola Huililco Ltda., Pucón, Chile – sequence: 3 givenname: Julio E surname: Crespo fullname: Crespo, Julio E organization: Laboratorio de Ciencias Naturales y Sostenibilidad-Programa IBAM, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, Osorno, Chile – sequence: 4 givenname: Aldo surname: Arriagada fullname: Arriagada, Aldo organization: Laboratorio de Biología Molecular y Citogenética, Departamento de Ciencias Biológicas y Biodiversidad, Universidad de Los Lagos, Osorno, Chile – sequence: 5 givenname: Luisa surname: Baessolo fullname: Baessolo, Luisa organization: Colegio Proyección Siglo XXI, Osorno, Chile – sequence: 6 givenname: Cristian B surname: Canales-Aguirre fullname: Canales-Aguirre, Cristian B organization: Núcleo Milenio de Salmónidos Invasores (INVASAL), Concepción, Chile – sequence: 7 givenname: Javier surname: Marín fullname: Marín, Javier organization: Programa de Pesca Recreativa, Departamento de Acuicultura y Recursos Agroalimentarios, Universidad de Los Lagos, Osorno, Chile – sequence: 8 givenname: René surname: Carrasco fullname: Carrasco, René organization: Programa de Pesca Recreativa, Departamento de Acuicultura y Recursos Agroalimentarios, Universidad de Los Lagos, Osorno, Chile |
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Cites_doi | 10.1111/j.1095-8649.1992.tb02641.x 10.20506/rst.29.2.1973 10.1023/A:1007456529627 10.1093/genetics/132.2.583 10.1093/genetics/131.2.479 10.1111/j.1752-4571.2011.00189.x 10.1080/23308249.2015.1024825 10.1139/f00-200 10.1007/s11160-007-9079-1 10.1371/journal.pone.0142040 10.1038/nmeth.2109 10.1371/journal.pone.0075465 10.1577/1548-8659(2002)131<0582:CFDCOA>2.0.CO;2 10.1093/oxfordjournals.molbev.a026036 10.1093/molbev/msr121 10.3856/vol43-issue1-fulltext-1 10.1046/j.1365-294x.1999.00674.x 10.1046/j.1365-294x.1998.00413.x 10.1139/f71-098 10.1139/f04-056 10.1111/j.1365-2427.2008.02157.x 10.1002/ece3.3574 10.3856/vol43-issue1-fulltext-6 10.1111/j.1558-5646.1985.tb00420.x 10.1577/T05-078.1 10.1016/0044-8486(92)90339-M 10.1016/0044-8486(92)90333-G 10.1111/j.1752-4571.2010.00136.x 10.1007/s10750-015-2577-6 10.1139/f89-184 10.1139/f71-143 10.1093/bioinformatics/btp187 10.1111/j.0022-1112.2004.00461.x 10.1111/eva.12188 10.1111/j.1365-294X.1992.tb00172.x 10.4067/S0716-078X2006000100009 10.1111/j.1755-0998.2010.02847.x 10.1146/annurev.es.18.110187.002421 10.1016/j.ympev.2010.05.016 10.1577/1548-8659(1997)126<0397:MDANMD>2.3.CO;2 10.1007/s11160-014-9351-0 10.1111/j.1365-2109.1998.tb01104.x 10.1139/z77-239 10.1046/j.0962-1083.2001.01344.x 10.1577/1548-8659(1962)24[156:TOOHRT]2.0.CO;2 10.1371/journal.pone.0141775 10.1139/f94-316 10.1016/j.aquaculture.2004.05.027 10.2307/2410454 |
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Copyright | Copyright © 2019 Colihueque, Estay, Crespo, Arriagada, Baessolo, Canales-Aguirre, Marín and Carrasco. Copyright © 2019 Colihueque, Estay, Crespo, Arriagada, Baessolo, Canales-Aguirre, Marín and Carrasco 2019 Colihueque, Estay, Crespo, Arriagada, Baessolo, Canales-Aguirre, Marín and Carrasco |
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Keywords | population genetics phylogenetic analysis self-sustaining populations rainbow trout origin mtDNA control region genetic-diversity introduced species |
Language | English |
License | Copyright © 2019 Colihueque, Estay, Crespo, Arriagada, Baessolo, Canales-Aguirre, Marín and Carrasco. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
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Title | Genetic Differentiation and Origin of Naturalized Rainbow Trout Populations From Southern Chile, Revealed by the mtDNA Control Region Marker |
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