Surveillance of SARS-CoV-2 Infection in Rodent Populations in Tokyo, Japan
The persistence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among wildlife populations poses a potential risk for the emergence of novel variants. Therefore, monitoring SARS-CoV-2 infections in animals is crucial. As urban rodents live in close proximity to human habitats, there...
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| Published in | Japanese Journal of Infectious Diseases Vol. 77; no. 6; pp. 342 - 344 |
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| Main Authors | , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
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Japan
National Institute of Infectious Diseases
29.11.2024
Japan Science and Technology Agency |
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| Abstract | The persistence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among wildlife populations poses a potential risk for the emergence of novel variants. Therefore, monitoring SARS-CoV-2 infections in animals is crucial. As urban rodents live in close proximity to human habitats, there is a concern that they may be a potential source of zoonoses. To examine the prevalence of SARS-CoV-2 in rodent populations, we analyzed 128 serum samples and 129 oral swabs collected from 128 brown rats (Rattus norvegicus) and two black rats (Rattus rattus) captured for pest control purposes in Tokyo, Japan, between May and December 2023. A virus-neutralizing test using the omicron variant revealed no evidence of SARS-CoV-2 infection. Real-time reverse transcription- PCR of oral swabs did not detect any SARS-CoV-2 RNA-positive rats. These results indicate a low probability of SARS-CoV-2 circulation among rat populations in Tokyo. |
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| AbstractList | The persistence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among wildlife populations poses a potential risk for the emergence of novel variants. Therefore, monitoring SARS-CoV-2 infections in animals is crucial. As urban rodents live in close proximity to human habitats, there is a concern that they may be a potential source of zoonoses. To examine the prevalence of SARS-CoV-2 in rodent populations, we analyzed 128 serum samples and 129 oral swabs collected from 128 brown rats (Rattus norvegicus) and two black rats (Rattus rattus) captured for pest control purposes in Tokyo, Japan, between May and December 2023. A virus-neutralizing test using the omicron variant revealed no evidence of SARS-CoV-2 infection. Real-time reverse transcription- PCR of oral swabs did not detect any SARS-CoV-2 RNA-positive rats. These results indicate a low probability of SARS-CoV-2 circulation among rat populations in Tokyo. The persistence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among wildlife populations poses a potential risk for the emergence of novel variants. Therefore, monitoring SARS-CoV-2 infections in animals is crucial. As urban rodents live in close proximity to human habitats, there is a concern that they may be a potential source of zoonoses. To examine the prevalence of SARS-CoV-2 in rodent populations, we analyzed 128 serum samples and 129 oral swabs collected from 128 brown rats (Rattus norvegicus) and two black rats (Rattus rattus) captured for pest control purposes in Tokyo, Japan, between May and December 2023. A virus-neutralizing test using the omicron variant revealed no evidence of SARS-CoV-2 infection. Real-time reverse transcription- PCR of oral swabs did not detect any SARS-CoV-2 RNA-positive rats. These results indicate a low probability of SARS-CoV-2 circulation among rat populations in Tokyo.The persistence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) among wildlife populations poses a potential risk for the emergence of novel variants. Therefore, monitoring SARS-CoV-2 infections in animals is crucial. As urban rodents live in close proximity to human habitats, there is a concern that they may be a potential source of zoonoses. To examine the prevalence of SARS-CoV-2 in rodent populations, we analyzed 128 serum samples and 129 oral swabs collected from 128 brown rats (Rattus norvegicus) and two black rats (Rattus rattus) captured for pest control purposes in Tokyo, Japan, between May and December 2023. A virus-neutralizing test using the omicron variant revealed no evidence of SARS-CoV-2 infection. Real-time reverse transcription- PCR of oral swabs did not detect any SARS-CoV-2 RNA-positive rats. These results indicate a low probability of SARS-CoV-2 circulation among rat populations in Tokyo. |
| ArticleNumber | JJID.2024.143 |
| Author | Kuroda, Yudai Sasaki, Takeshi Park, Eun-sil Mori, Yoshiyuki Tatemoto, Kango Virhuez-Mendoza, Milagros Yamamoto, Tsukasa Watanabe, Kentaro Tanikawa, Tsutomu Kiyokawa, Yasushi Shibo, Keigo Eguchi, Yuya Hotta, Akitoyo Koizumi, Nobuo Komatsu, Noriyuki Katahira, Hirotaka Taira, Masakatsu Banzai, Azusa Maeda, Ken |
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| Cites_doi | 10.1155/2023/7631611 10.1111/j.1471-8286.2007.01752.x 10.3390/v15102028 10.1080/22221751.2023.2217940 10.1016/j.vetmic.2020.108693 10.46234/ccdcw2021.255 10.1128/mbio.03621-22 10.1590/s1678-9946202466008 10.1101/2023.12.15.571826 10.3201/eid2802.211586 10.1111/tbed.14219 10.3390/microorganisms8091405 10.3201/eid2702.203794 10.1073/pnas.2121644119 |
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| References_xml | – reference: 6. Wang Y, Lenoch J, Kohler D, et al. SARS-CoV-2 exposure in Norway rats (Rattus norvegicus) from New York City. mBio. 2023;14:e0362122. – reference: 3. Hammer AS, Quaade ML, Rasmussen TB, et al. SARS-CoV-2 transmission between mink (Neovison vison) and humans, Denmark. Emerg Infect Dis. 2021;27:547-551. – reference: 13. Martínez-Hernández F, Gonzalez-Arenas NR, Cervantes JAO, et al. Identification of SARS-CoV-2 in urban rodents from Southern Mexico City at the beginning of the COVID-19 pandemic. Rev Inst Med Trop Sao Paulo. 2024;66:e8. – reference: 1. Rahman MT, Sobur MA, Islam MS, et al. Zoonotic diseases: etiology, impact, and control. Microorganisms. 2020;8:1405. – reference: 2. Decaro N, Lorusso A. Novel human coronavirus (SARS-CoV-2): a lesson from animal coronaviruses. Vet Microbiol. 2020;244:108693. – reference: 5. Robinson SJ, Kotwa JD, Jeeves SP, et al. Surveillance for SARS-CoV-2 in Norway rats (Rattus norvegicus) from Southern Ontario. Transbound Emerg Dis. 2023;2023:7631611. – reference: 4. Kuchipudi SV, Surendran-Nair M, Ruden RM, et al. Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer. Proc Natl Acad Sci U S A. 2022;119:e2121644119. – reference: 14. Colombo VC, Sluydts V, Mariën J, et al. SARS-CoV-2 surveillance in Norway rats (Rattus norvegicus) from Antwerp sewer system, Belgium. Transbound Emerg Dis. 2022;69:3016-3021. – reference: 15. Fisher AM, Airey G, Liu Y, et al. The ecology of viruses in urban rodents with a focus on SARS-CoV-2. Emerg Microbes Infect. 2023;12:2217940. – reference: 7. Robins JH, Hingston M, Matisoo-Smith E, et al. Identifying Rattus species using mitochondrial DNA. Mol Ecol Notes. 2007;7:717-729. – reference: 12. Wernike K, Mehl C, Aebischer A, et al. SARS-CoV-2 and other coronaviruses in rats, Berlin, Germany, 2023. bioRxiv. 2023; doi: https://doi.org/10.1101/2023.12.15.571826. Preprint. – reference: 8. Kuroda Y, Watanabe K, Yamamoto T, et al. Pet animals were infected with SARS-CoV-2 from their owners who developed COVID-19: case series study. Viruses. 2023;15:2028. – reference: 9. Our World in Data. SARS-CoV-2 variants in analyzed sequences, Japan. Available at <https://ourworldindata.org/grapher/covid-variants-area?country=~JPN>. Accessed on March 25, 2024. – reference: 11. Miot EF, Worthington BM, Ng KH, et al. Surveillance of rodent pests for SARS-CoV-2 and other coronaviruses, Hong Kong. Emerg Infect Dis. 2022;28:467-470. – reference: 10. Khare S, Gurry C, Freitas L, et al. GISAID's role in pandemic response. China CDC Wkly. 2021;3:1049-1051. – ident: 5 doi: 10.1155/2023/7631611 – ident: 7 doi: 10.1111/j.1471-8286.2007.01752.x – ident: 8 doi: 10.3390/v15102028 – ident: 15 doi: 10.1080/22221751.2023.2217940 – ident: 2 doi: 10.1016/j.vetmic.2020.108693 – ident: 10 doi: 10.46234/ccdcw2021.255 – ident: 6 doi: 10.1128/mbio.03621-22 – ident: 13 doi: 10.1590/s1678-9946202466008 – ident: 12 doi: 10.1101/2023.12.15.571826 – ident: 11 doi: 10.3201/eid2802.211586 – ident: 9 – ident: 14 doi: 10.1111/tbed.14219 – ident: 1 doi: 10.3390/microorganisms8091405 – ident: 3 doi: 10.3201/eid2702.203794 – ident: 4 doi: 10.1073/pnas.2121644119 |
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| SubjectTerms | Animals Coronaviruses COVID-19 COVID-19 - diagnosis COVID-19 - epidemiology COVID-19 - veterinary COVID-19 - virology epidemiology Humans Pest control Populations Prevalence Rats Respiratory diseases Reverse transcription RNA, Viral - blood RNA, Viral - genetics Rodents SARS-CoV-2 SARS-CoV-2 - genetics SARS-CoV-2 - isolation & purification Severe acute respiratory syndrome coronavirus 2 Tokyo - epidemiology Viral diseases Wildlife |
| Title | Surveillance of SARS-CoV-2 Infection in Rodent Populations in Tokyo, Japan |
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