AiiDA: automated interactive infrastructure and database for computational science

[Display omitted] Computational science has seen in the last decades a spectacular rise in the scope, breadth, and depth of its efforts. Notwithstanding this prevalence and impact, it is often still performed using the renaissance model of individual artisans gathered in a workshop, under the guidan...

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Published inComputational materials science Vol. 111; no. C; pp. 218 - 230
Main Authors Pizzi, Giovanni, Cepellotti, Andrea, Sabatini, Riccardo, Marzari, Nicola, Kozinsky, Boris
Format Journal Article
LanguageEnglish
Published Netherlands Elsevier B.V 01.01.2016
Elsevier
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Abstract [Display omitted] Computational science has seen in the last decades a spectacular rise in the scope, breadth, and depth of its efforts. Notwithstanding this prevalence and impact, it is often still performed using the renaissance model of individual artisans gathered in a workshop, under the guidance of an established practitioner. Great benefits could follow instead from adopting concepts and tools coming from computer science to manage, preserve, and share these computational efforts. We illustrate here our paradigm sustaining such vision, based around the four pillars of Automation, Data, Environment, and Sharing. We then discuss its implementation in the open-source AiiDA platform (http://www.aiida.net), that has been tuned first to the demands of computational materials science. AiiDA’s design is based on directed acyclic graphs to track the provenance of data and calculations, and ensure preservation and searchability. Remote computational resources are managed transparently, and automation is coupled with data storage to ensure reproducibility. Last, complex sequences of calculations can be encoded into scientific workflows. We believe that AiiDA’s design and its sharing capabilities will encourage the creation of social ecosystems to disseminate codes, data, and scientific workflows.
AbstractList [Display omitted] Computational science has seen in the last decades a spectacular rise in the scope, breadth, and depth of its efforts. Notwithstanding this prevalence and impact, it is often still performed using the renaissance model of individual artisans gathered in a workshop, under the guidance of an established practitioner. Great benefits could follow instead from adopting concepts and tools coming from computer science to manage, preserve, and share these computational efforts. We illustrate here our paradigm sustaining such vision, based around the four pillars of Automation, Data, Environment, and Sharing. We then discuss its implementation in the open-source AiiDA platform (http://www.aiida.net), that has been tuned first to the demands of computational materials science. AiiDA’s design is based on directed acyclic graphs to track the provenance of data and calculations, and ensure preservation and searchability. Remote computational resources are managed transparently, and automation is coupled with data storage to ensure reproducibility. Last, complex sequences of calculations can be encoded into scientific workflows. We believe that AiiDA’s design and its sharing capabilities will encourage the creation of social ecosystems to disseminate codes, data, and scientific workflows.
Author Pizzi, Giovanni
Kozinsky, Boris
Sabatini, Riccardo
Cepellotti, Andrea
Marzari, Nicola
Author_xml – sequence: 1
  givenname: Giovanni
  surname: Pizzi
  fullname: Pizzi, Giovanni
  email: giovanni.pizzi@epfl.ch
  organization: Theory and Simulation of Materials (THEOS), and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
– sequence: 2
  givenname: Andrea
  surname: Cepellotti
  fullname: Cepellotti, Andrea
  email: andrea.cepellotti@epfl.ch
  organization: Theory and Simulation of Materials (THEOS), and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
– sequence: 3
  givenname: Riccardo
  surname: Sabatini
  fullname: Sabatini, Riccardo
  organization: Theory and Simulation of Materials (THEOS), and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
– sequence: 4
  givenname: Nicola
  surname: Marzari
  fullname: Marzari, Nicola
  organization: Theory and Simulation of Materials (THEOS), and National Centre for Computational Design and Discovery of Novel Materials (MARVEL), École Polytechnique Fédérale de Lausanne, 1015 Lausanne, Switzerland
– sequence: 5
  givenname: Boris
  surname: Kozinsky
  fullname: Kozinsky, Boris
  organization: Research and Technology Center, Robert Bosch LLC, Cambridge, MA 02139, USA
BackLink https://www.osti.gov/biblio/1397503$$D View this record in Osti.gov
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Snippet [Display omitted] Computational science has seen in the last decades a spectacular rise in the scope, breadth, and depth of its efforts. Notwithstanding this...
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