SoySNP618K array: A high‐resolution single nucleotide polymorphism platform as a valuable genomic resource for soybean genetics and breeding

• Published in: Journal of integrative plant biology Vol. 64; no. 3; pp. 632 - 648
• Main Authors: Li, Yan‐Fei, Li, Ying‐Hui, Su, Shan‐Shan, Reif, Jochen C., Qi, Zhao‐Ming, Wang, Xiao‐Bo, Wang, Xing, Tian, Yu, Li, De‐Lin, Sun, Ru‐Jian, Liu, Zhang‐Xiong, Xu, Ze‐Jun, Fu, Guang‐Hui, Ji, Ya‐Liang, Chen, Qing‐Shan, Liu, Ji‐Qiang, Qiu, Li‐Juan
• Format: Journal Article
• Language: English
• Published: China (Republic : 1949- ) Wiley Subscription Services, Inc 01.03.2022; Department of Plant Genetics and Breeding,China Agricultural University,Beijing 100193,China%The National Key Facility for Crop Gene Resources and Genetic Improvement(NFCRI)/Key Laboratory of Crop Gene Resource and Germplasm Enhancement(MOA)/Key Laboratory of Soybean Biology(Beijing)(MOA),Institute of Crop Sciences,Chinese Academy of Agricultural Sciences,Beijing 100081,China; Key Laboratory of Soybean Biology in Chinese Ministry of Education(Key Laboratory of Soybean Biology and Breeding/Genetics of Chinese Agriculture Ministry),Northeast Agricultural University,Harbin 150030,China; The National Key Facility for Crop Gene Resources and Genetic Improvement(NFCRI)/Key Laboratory of Crop Gene Resource and Germplasm Enhancement(MOA)/Key Laboratory of Soybean Biology(Beijing)(MOA),Institute of Crop Sciences,Chinese Academy of Agricultural Sciences,Beijing 100081,China%Beijing Compass Biotechnology Co.Ltd,Beijing 102206,China%Department of Breeding Research,Leibniz Institute of Plant Genetics and Crop Plant Research(IPK),Gatersleben 06466,Germany%Key Laboratory of Soybean Biology in Chinese Ministry of Education(Key Laboratory of Soybean Biology and Breeding/Genetics of Chinese Agriculture Ministry),Northeast Agricultural University,Harbin 150030,China%School of Agronomy,Anhui Agricultural University,Hefei 230036,China%Xuzhou Institute of Agricultural Sciences of Xu-huai Region of Jiangsu,Xuzhou 221131,China%The National Key Facility for Crop Gene Resources and Genetic Improvement(NFCRI)/Key Laboratory of Crop Gene Resource and Germplasm Enhancement(MOA)/Key Laboratory of Soybean Biology(Beijing)(MOA),Institute of Crop Sciences,Chinese Academy of Agricultural Sciences,Beijing 100081,China; Hulun Buir Institution of Agricultural Sciences,ZhalantunInner Mongolia 021000,China%Suzhou Academy of Agricultural Sciences,Suzhou 234000,China
• Subjects: Arrays; Crop science; Crops; Domestication; Flowering; functional single nucleotide polymorphism array; Gene banks; gene discovery; Gene mapping; Gene polymorphism; Genes; Genetics; Genome, Plant - genetics; Genome-Wide Association Study; Genomes; genome‐wide association studies; genomic selection; Genomics; Genotype; Genotyping; Germplasm; Glycine max - genetics; Inbreeding; Mapping; marker‐assisted selection; Nucleotides; Plant Breeding; Polymorphism; Polymorphism, Single Nucleotide - genetics; prediction; Quantitative trait loci; quantitative traits; Single-nucleotide polymorphism; soybean; Soybeans; soybean; genomic selection; marker-assisted selection; gene discovery; functional single nucleotide polymorphism array; genome-wide association studies

ABSTRACT Innovations in genomics have enabled the development of low‐cost, high‐resolution, single nucleotide polymorphism (SNP) genotyping arrays that accelerate breeding progress and support basic research in crop science. Here, we developed and validated the SoySNP618K array (618,888 SNPs) for th...