Comparative genomics of nematodes

Recent transcriptome and genome projects have dramatically expanded the biological data available across the phylum Nematoda. Here we summarize analyses of these sequences, which have revealed multiple unexpected results. Despite a uniform body plan, nematodes are more diverse at the molecular level...

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Published inTrends in genetics Vol. 21; no. 10; pp. 573 - 581
Main Authors Mitreva, Makedonka, Blaxter, Mark L., Bird, David M., McCarter, James P.
Format Journal Article
LanguageEnglish
Published Oxford Elsevier Ltd 01.10.2005
Elsevier Science
Subjects
Animals
Biological and medical sciences
Caenorhabditis elegans
Chromosome Aberrations
Databases, Genetic
Evolution, Molecular
Fundamental and applied biological sciences. Psychology
Gene Transfer, Horizontal - genetics
Genetic Variation
Genetics of eukaryotes. Biological and molecular evolution
Genome - genetics
Genomics - methods
Genomics - trends
Molecular and cellular biology
Nematoda
Nematoda - genetics
Phylogeny
Species Specificity
Helmintha
Genetics
Nemathelminthia
Invertebrata
Nematoda
Genomics
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Abstract Recent transcriptome and genome projects have dramatically expanded the biological data available across the phylum Nematoda. Here we summarize analyses of these sequences, which have revealed multiple unexpected results. Despite a uniform body plan, nematodes are more diverse at the molecular level than was previously recognized, with many species- and group-specific novel genes. In the genus Caenorhabditis, changes in chromosome arrangement, particularly local inversions, are also rapid, with breakpoints occurring at 50-fold the rate in vertebrates. Tylenchid plant parasitic nematode genomes contain several genes closely related to genes in bacteria, implicating horizontal gene transfer events in the origins of plant parasitism. Functional genomics techniques are also moving from Caenorhabditis elegans to application throughout the phylum. Soon, eight more draft nematode genome sequences will be available. This unique resource will underpin both molecular understanding of these most abundant metazoan organisms and aid in the examination of the dynamics of genome evolution in animals.
AbstractList Recent transcriptome and genome projects have dramatically expanded the biological data available across the phylum Nematoda. Here we summarize analyses of these sequences, which have revealed multiple unexpected results. Despite a uniform body plan, nematodes are more diverse at the molecular level than was previously recognized, with many species- and group-specific novel genes. In the genus Caenorhabditis, changes in chromosome arrangement, particularly local inversions, are also rapid, with breakpoints occurring at 50-fold the rate in vertebrates. Tylenchid plant parasitic nematode genomes contain several genes closely related to genes in bacteria, implicating horizontal gene transfer events in the origins of plant parasitism. Functional genomics techniques are also moving from Caenorhabditis elegans to application throughout the phylum. Soon, eight more draft nematode genome sequences will be available. This unique resource will underpin both molecular understanding of these most abundant metazoan organisms and aid in the examination of the dynamics of genome evolution in animals.
Recent transcriptome and genome projects have dramatically expanded the biological data available across the phylum Nematoda. Here we summarize analyses of these sequences, which have revealed multiple unexpected results. Despite a uniform body plan, nematodes are more diverse at the molecular level than was previously recognized, with many species- and group-specific novel genes. In the genus Caenorhabditis, changes in chromosome arrangement, particularly local inversions, are also rapid, with breakpoints occurring at 50-fold the rate in vertebrates. Tylenchid plant parasitic nematode genomes contain several genes closely related to genes in bacteria, implicating horizontal gene transfer events in the origins of plant parasitism. Functional genomics techniques are also moving from Caenorhabditis elegans to application throughout the phylum. Soon, eight more draft nematode genome sequences will be available. This unique resource will underpin both molecular understanding of these most abundant metazoan organisms and aid in the examination of the dynamics of genome evolution in animals.
Author Bird, David M.
Mitreva, Makedonka
Blaxter, Mark L.
McCarter, James P.
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  surname: Mitreva
  fullname: Mitreva, Makedonka
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  surname: Blaxter
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  givenname: David M.
  surname: Bird
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  givenname: James P.
  surname: McCarter
  fullname: McCarter, James P.
  organization: Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, St Louis, MO 63108, USA
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Keywords Helmintha
Genetics
Nemathelminthia
Invertebrata
Nematoda
Genomics
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Snippet Recent transcriptome and genome projects have dramatically expanded the biological data available across the phylum Nematoda. Here we summarize analyses of...
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SubjectTerms Animals
Biological and medical sciences
Caenorhabditis elegans
Chromosome Aberrations
Databases, Genetic
Evolution, Molecular
Fundamental and applied biological sciences. Psychology
Gene Transfer, Horizontal - genetics
Genetic Variation
Genetics of eukaryotes. Biological and molecular evolution
Genome - genetics
Genomics - methods
Genomics - trends
Molecular and cellular biology
Nematoda
Nematoda - genetics
Phylogeny
Species Specificity
Title Comparative genomics of nematodes
URI https://dx.doi.org/10.1016/j.tig.2005.08.003
https://www.ncbi.nlm.nih.gov/pubmed/16099532
https://search.proquest.com/docview/17394006
https://search.proquest.com/docview/68582846
Volume 21
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