Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

• Published in: Cell systems Vol. 3; no. 1; pp. 95 - 98
• Main Authors: Durand, Neva C., Shamim, Muhammad S., Machol, Ido, Rao, Suhas S.P., Huntley, Miriam H., Lander, Eric S., Aiden, Erez Lieberman
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 01.07.2016
• Subjects: Algorithms; Computational Biology; Genome; Software

Hi-C experiments explore the 3D structure of the genome, generating terabases of data to create high-resolution contact maps. Here, we introduce Juicer, an open-source tool for analyzing terabase-scale Hi-C datasets. Juicer allows users without a computational background to transform raw sequence da...