A Single α Helix Drives Extensive Remodeling of the Proteasome Lid and Completion of Regulatory Particle Assembly

Most short-lived eukaryotic proteins are degraded by the proteasome. A proteolytic core particle (CP) capped by regulatory particles (RPs) constitutes the 26S proteasome complex. RP biogenesis culminates with the joining of two large subcomplexes, the lid and base. In yeast and mammals, the lid appe...

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Published inCell Vol. 163; no. 2; pp. 432 - 444
Main Authors Tomko, Robert J., Taylor, David W., Chen, Zhuo A., Wang, Hong-Wei, Rappsilber, Juri, Hochstrasser, Mark
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 08.10.2015
Cell Press
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Abstract Most short-lived eukaryotic proteins are degraded by the proteasome. A proteolytic core particle (CP) capped by regulatory particles (RPs) constitutes the 26S proteasome complex. RP biogenesis culminates with the joining of two large subcomplexes, the lid and base. In yeast and mammals, the lid appears to assemble completely before attaching to the base, but how this hierarchical assembly is enforced has remained unclear. Using biochemical reconstitutions, quantitative cross-linking/mass spectrometry, and electron microscopy, we resolve the mechanistic basis for the linkage between lid biogenesis and lid-base joining. Assimilation of the final lid subunit, Rpn12, triggers a large-scale conformational remodeling of the nascent lid that drives RP assembly, in part by relieving steric clash with the base. Surprisingly, this remodeling is triggered by a single Rpn12 α helix. Such assembly-coupled conformational switching is reminiscent of viral particle maturation and may represent a commonly used mechanism to enforce hierarchical assembly in multisubunit complexes. [Display omitted] •First in vitro reconstitution of RP assembly with completely recombinant components•Electron microscopy and cross-linking reveal massive remodeling of a lid precursor•Remodeling of the lid relieves steric clash with the RP base to promote RP assembly•Lid remodeling can be triggered by a single C-terminal α helix in the Rpn12 subunit A single alpha helix from the final subunit that incorporates into the proteasomal lid triggers a large-scale conformational switch that enables subsequent assembly of the lid and base, suggesting a general paradigm for hierarchical assembly of macromolecular complexes similar to that of virus particles.
AbstractList Most short-lived eukaryotic proteins are degraded by the proteasome. A proteolytic core particle (CP) capped by regulatory particles (RPs) constitutes the 26S proteasome complex. RP biogenesis culminates with the joining of two large subcomplexes, the lid and base. In yeast and mammals, the lid appears to assemble completely before attaching to the base, but how this hierarchical assembly is enforced has remained unclear. Using biochemical reconstitutions, quantitative cross-linking/mass spectrometry, and electron microscopy, we resolve the mechanistic basis for the linkage between lid biogenesis and lid-base joining. Assimilation of the final lid subunit, Rpn12, triggers a large-scale conformational remodeling of the nascent lid that drives RP assembly, in part by relieving steric clash with the base. Surprisingly, this remodeling is triggered by a single Rpn12 α helix. Such assembly-coupled conformational switching is reminiscent of viral particle maturation and may represent a commonly used mechanism to enforce hierarchical assembly in multisubunit complexes. • First in vitro reconstitution of RP assembly with completely recombinant components • Electron microscopy and cross-linking reveal massive remodeling of a lid precursor • Remodeling of the lid relieves steric clash with the RP base to promote RP assembly • Lid remodeling can be triggered by a single C-terminal α helix in the Rpn12 subunit A single alpha helix from the final subunit that incorporates into the proteasomal lid triggers a large-scale conformational switch that enables subsequent assembly of the lid and base, suggesting a general paradigm for hierarchical assembly of macromolecular complexes similar to that of virus particles.
Most short-lived eukaryotic proteins are degraded by the proteasome. A proteolytic core particle (CP) capped by regulatory particles (RPs) constitutes the 26S proteasome complex. RP biogenesis culminates with the joining of two large subcomplexes, the lid and base. In yeast and mammals, the lid appears to assemble completely before attaching to the base, but how this hierarchical assembly is enforced has remained unclear. Using biochemical reconstitutions, quantitative cross-linking/mass spectrometry, and electron microscopy, we resolve the mechanistic basis for the linkage between lid biogenesis and lid-base joining. Assimilation of the final lid subunit, Rpn12, triggers a large-scale conformational remodeling of the nascent lid that drives RP assembly, in part by relieving steric clash with the base. Surprisingly, this remodeling is triggered by a single Rpn12 α helix. Such assembly-coupled conformational switching is reminiscent of viral particle maturation and may represent a commonly used mechanism to enforce hierarchical assembly in multisubunit complexes. [Display omitted] •First in vitro reconstitution of RP assembly with completely recombinant components•Electron microscopy and cross-linking reveal massive remodeling of a lid precursor•Remodeling of the lid relieves steric clash with the RP base to promote RP assembly•Lid remodeling can be triggered by a single C-terminal α helix in the Rpn12 subunit A single alpha helix from the final subunit that incorporates into the proteasomal lid triggers a large-scale conformational switch that enables subsequent assembly of the lid and base, suggesting a general paradigm for hierarchical assembly of macromolecular complexes similar to that of virus particles.
Most short-lived eukaryotic proteins are degraded by the proteasome. A proteolytic core particle (CP) capped by regulatory particles (RPs) constitutes the 26S proteasome complex. RP biogenesis culminates with the joining of two large subcomplexes, the lid and base. In yeast and mammals, the lid appears to assemble completely before attaching to the base, but how this hierarchical assembly is enforced has remained unclear. Using biochemical reconstitutions, quantitative cross-linking/mass spectrometry, and electron microscopy, we resolve the mechanistic basis for the linkage between lid biogenesis and lid-base joining. Assimilation of the final lid subunit, Rpn12, triggers a large-scale conformational remodeling of the nascent lid that drives RP assembly, in part by relieving steric clash with the base. Surprisingly, this remodeling is triggered by a single Rpn12 α helix. Such assembly-coupled conformational switching is reminiscent of viral particle maturation and may represent a commonly used mechanism to enforce hierarchical assembly in multisubunit complexes.
Author Taylor, David W.
Wang, Hong-Wei
Tomko, Robert J.
Chen, Zhuo A.
Rappsilber, Juri
Hochstrasser, Mark
AuthorAffiliation 5 Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany
4 Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, PRC
2 California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720-3200, USA
3 Wellcome Trust Centre for Cell Biology, University of Edinburgh, Michael Swann Building, King’s Buildings, Max Born Crescent, Mayfield Road, Edinburgh EH9 3BF, Scotland
1 Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA
AuthorAffiliation_xml – name: 5 Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany
– name: 1 Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA
– name: 2 California Institute for Quantitative Biosciences, University of California, Berkeley, Berkeley, CA 94720-3200, USA
– name: 4 Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, PRC
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  givenname: Hong-Wei
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  surname: Hochstrasser
  fullname: Hochstrasser, Mark
  email: mark.hochstrasser@yale.edu
  organization: Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520-8114, USA
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Snippet Most short-lived eukaryotic proteins are degraded by the proteasome. A proteolytic core particle (CP) capped by regulatory particles (RPs) constitutes the 26S...
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SubjectTerms Escherichia coli - metabolism
Mass Spectrometry
Microscopy, Electron
Models, Molecular
Proteasome Endopeptidase Complex - chemistry
Proteasome Endopeptidase Complex - metabolism
Protein Structure, Secondary
Saccharomyces cerevisiae - chemistry
Saccharomyces cerevisiae - metabolism
Saccharomyces cerevisiae Proteins - chemistry
Saccharomyces cerevisiae Proteins - metabolism
Title A Single α Helix Drives Extensive Remodeling of the Proteasome Lid and Completion of Regulatory Particle Assembly
URI https://dx.doi.org/10.1016/j.cell.2015.09.022
https://www.ncbi.nlm.nih.gov/pubmed/26451487
https://search.proquest.com/docview/1721350274
https://pubmed.ncbi.nlm.nih.gov/PMC4601081
Volume 163
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