Comparison of soil quality indexes calculated by network and principal component analysis for carbonated soils under different uses

•Indicators of soil quality index (SQI) were selected by Network analysis (NTA).•SQI from NTA were compare with those obtained by principal component analysis (PCA).•NTA generated SQIs that reflected more accurately the different soil uses.•Agricultural soils quality was deteriorated by the loss of...

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Published inEcological indicators Vol. 143; p. 109374
Main Authors Martín-Sanz, Juan Pedro, de Santiago-Martín, Ana, Valverde-Asenjo, Inmaculada, Quintana-Nieto, José Ramón, González-Huecas, Concepción, López-Lafuente, Antonio L.
Format Journal Article
LanguageEnglish
Published Elsevier Ltd 01.10.2022
Elsevier
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Abstract •Indicators of soil quality index (SQI) were selected by Network analysis (NTA).•SQI from NTA were compare with those obtained by principal component analysis (PCA).•NTA generated SQIs that reflected more accurately the different soil uses.•Agricultural soils quality was deteriorated by the loss of organic matter. There is an urgent need to conserve and improve the quality of agricultural soils in the coming decades. Decision tools capable of providing reliable information about soil quality are needed, and soil quality index (SQI) is one of the most used. Principal component analysis (PCA) is the common methodology to calculate it, however in some cases fails to differentiate soil quality properly. Therefore, the aim of this work is to assess a SQI through a different methodology as network analysis (NTA) and compare it with PCA, assuming that soil uses affect soil qualities differently. From soils with different uses (rainfed, olive grove and forest) network analysis and principal component analysis have been used to select a minimum dataset (MDS) to generate SQI from 36 physical, chemical and biological soil variables. Using NTA, geometric mean of the enzyme activities (GMEAN), bulk density (BD) and phosphatase activity (phos) where selected as indicators, while PCA selected total organic carbon (TOC), free Fe oxides (FeF), crystalline Mn oxides (MnX), pH, electrical conductivity (EC) and percentage of coarse sand (CS). Four SQI were calculated from each MDS through linear and non-linear scoring equations and by additive integration and weights. The SQI generated by NTA were more useful than those generated by PCA, as in addition to having fewer indicators they were able to better differentiate the uses in the study. This greater resolution capacity of the NTA would be the consequence of a better selection of indicators using this method than using PCA.
AbstractList •Indicators of soil quality index (SQI) were selected by Network analysis (NTA).•SQI from NTA were compare with those obtained by principal component analysis (PCA).•NTA generated SQIs that reflected more accurately the different soil uses.•Agricultural soils quality was deteriorated by the loss of organic matter. There is an urgent need to conserve and improve the quality of agricultural soils in the coming decades. Decision tools capable of providing reliable information about soil quality are needed, and soil quality index (SQI) is one of the most used. Principal component analysis (PCA) is the common methodology to calculate it, however in some cases fails to differentiate soil quality properly. Therefore, the aim of this work is to assess a SQI through a different methodology as network analysis (NTA) and compare it with PCA, assuming that soil uses affect soil qualities differently. From soils with different uses (rainfed, olive grove and forest) network analysis and principal component analysis have been used to select a minimum dataset (MDS) to generate SQI from 36 physical, chemical and biological soil variables. Using NTA, geometric mean of the enzyme activities (GMEAN), bulk density (BD) and phosphatase activity (phos) where selected as indicators, while PCA selected total organic carbon (TOC), free Fe oxides (FeF), crystalline Mn oxides (MnX), pH, electrical conductivity (EC) and percentage of coarse sand (CS). Four SQI were calculated from each MDS through linear and non-linear scoring equations and by additive integration and weights. The SQI generated by NTA were more useful than those generated by PCA, as in addition to having fewer indicators they were able to better differentiate the uses in the study. This greater resolution capacity of the NTA would be the consequence of a better selection of indicators using this method than using PCA.
There is an urgent need to conserve and improve the quality of agricultural soils in the coming decades. Decision tools capable of providing reliable information about soil quality are needed, and soil quality index (SQI) is one of the most used. Principal component analysis (PCA) is the common methodology to calculate it, however in some cases fails to differentiate soil quality properly. Therefore, the aim of this work is to assess a SQI through a different methodology as network analysis (NTA) and compare it with PCA, assuming that soil uses affect soil qualities differently. From soils with different uses (rainfed, olive grove and forest) network analysis and principal component analysis have been used to select a minimum dataset (MDS) to generate SQI from 36 physical, chemical and biological soil variables. Using NTA, geometric mean of the enzyme activities (GMEAN), bulk density (BD) and phosphatase activity (phos) where selected as indicators, while PCA selected total organic carbon (TOC), free Fe oxides (FeF), crystalline Mn oxides (MnX), pH, electrical conductivity (EC) and percentage of coarse sand (CS). Four SQI were calculated from each MDS through linear and non-linear scoring equations and by additive integration and weights. The SQI generated by NTA were more useful than those generated by PCA, as in addition to having fewer indicators they were able to better differentiate the uses in the study. This greater resolution capacity of the NTA would be the consequence of a better selection of indicators using this method than using PCA.
ArticleNumber 109374
Author López-Lafuente, Antonio L.
Quintana-Nieto, José Ramón
Valverde-Asenjo, Inmaculada
de Santiago-Martín, Ana
González-Huecas, Concepción
Martín-Sanz, Juan Pedro
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  organization: Universidad Complutense de Madrid, Facultad de Farmacia, U.D. Edafología, Dpt. Química en Ciencias Farmacéuticas, Plaza Ramón y Cajal s/n, 28040 Madrid, Spain
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  surname: Quintana-Nieto
  fullname: Quintana-Nieto, José Ramón
  organization: Universidad Complutense de Madrid, Facultad de Farmacia, U.D. Edafología, Dpt. Química en Ciencias Farmacéuticas, Plaza Ramón y Cajal s/n, 28040 Madrid, Spain
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  givenname: Concepción
  surname: González-Huecas
  fullname: González-Huecas, Concepción
  organization: Universidad Complutense de Madrid, Facultad de Farmacia, U.D. Edafología, Dpt. Química en Ciencias Farmacéuticas, Plaza Ramón y Cajal s/n, 28040 Madrid, Spain
– sequence: 6
  givenname: Antonio L.
  surname: López-Lafuente
  fullname: López-Lafuente, Antonio L.
  organization: Universidad Complutense de Madrid, Facultad de Farmacia, U.D. Edafología, Dpt. Química en Ciencias Farmacéuticas, Plaza Ramón y Cajal s/n, 28040 Madrid, Spain
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IsDoiOpenAccess true
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Keywords GMEAN
BD
aglu
FeA
Ncw
Pav
dh
FeF
Soil quality
FS
WHC
Chw
pac
CaCO3
nag
Network analysis
FeX
pak
Nhw
EC
bglu
MnA
aryls
MnF
aryln
phos
TOC
ure
Ninor
Land use
CS
MnX
Ccw
TN
Mediterranean calcareous soil
Principal component analysis
Language English
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Snippet •Indicators of soil quality index (SQI) were selected by Network analysis (NTA).•SQI from NTA were compare with those obtained by principal component analysis...
There is an urgent need to conserve and improve the quality of agricultural soils in the coming decades. Decision tools capable of providing reliable...
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StartPage 109374
SubjectTerms bulk density
data collection
electrical conductivity
enzymes
forests
Land use
Mediterranean calcareous soil
Network analysis
olives
Principal component analysis
sand
soil
Soil quality
total organic carbon
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Title Comparison of soil quality indexes calculated by network and principal component analysis for carbonated soils under different uses
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