The evolution of the adenylate-forming protein family in beetles: Multiple luciferase gene paralogues in fireflies and glow-worms
Bioluminescence in beetles is dependent upon the enzyme luciferase. It has been hypothesised luciferase evolved from a fatty acyl-CoA synthetase gene deriving a novel bioluminescent function (neofunctionalization) after a gene duplication event. We evaluated this hypothesis within a phylogenetic fra...
Saved in:
Published in | Molecular phylogenetics and evolution Vol. 50; no. 1; pp. 93 - 101 |
---|---|
Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
United States
Elsevier Inc
2009
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Bioluminescence in beetles is dependent upon the enzyme luciferase. It has been hypothesised luciferase evolved from a fatty acyl-CoA synthetase gene deriving a novel bioluminescent function (neofunctionalization) after a gene duplication event. We evaluated this hypothesis within a phylogenetic framework using independent evidence obtained from the genome of
Tribolium castaneum, published luciferase genes and novel luciferase and luciferase-like sequences. This phylogenetic study provides evidence for a large gene family of luciferase and luciferase-like paralogues in bioluminescent and non-bioluminescent beetles. All luciferase sequences formed a clade supporting a protoluciferase existing prior to the divergence of the Lampyridae, Elateridae and Phengodidae (Elateroidea). Multiple luciferase genes were identified from members of the Photurinae and the Luciolinae indicating complex gene duplication events within lampyrid genomes. The majority of luciferase residues were identified to be under purifying selection as opposed to positive selection. We conclude that beetle luciferase may have arisen from a process of subfunctionalization as opposed to neofunctionalization early on in the evolution of the Elateroidea. |
---|---|
AbstractList | Bioluminescence in beetles is dependent upon the enzyme luciferase. It has been hypothesised luciferase evolved from a fatty acyl-CoA synthetase gene deriving a novel bioluminescent function (neofunctionalization) after a gene duplication event. We evaluated this hypothesis within a phylogenetic framework using independent evidence obtained from the genome of Tribolium castaneum, published luciferase genes and novel luciferase and luciferase- like sequences. This phylogenetic study provides evidence for a large gene family of luciferase and luciferase-like paralogues in bioluminescent and non-bioluminescent beetles. All luciferase sequences formed a clade supporting a protoluciferase existing prior to the divergence of the Lampyridae, Elateridae and Phengodidae (Elateroidea). Multiple luciferase genes were identified from members of the Photurinae and the Luciolinae indicating complex gene duplication events within lampyrid genomes. The majority of luciferase residues were identified to be under purifying selection as opposed to positive selection. We conclude that beetle luciferase may have arisen from a process of subfunctionalization as opposed to neofunctionalization early on in the evolution of the Elateroidea. Bioluminescence in beetles is dependent upon the enzyme luciferase. It has been hypothesised luciferase evolved from a fatty acyl-CoA synthetase gene deriving a novel bioluminescent function (neofunctionalization) after a gene duplication event. We evaluated this hypothesis within a phylogenetic framework using independent evidence obtained from the genome of Tribolium castaneum, published luciferase genes and novel luciferase and luciferase-like sequences. This phylogenetic study provides evidence for a large gene family of luciferase and luciferase-like paralogues in bioluminescent and non-bioluminescent beetles. All luciferase sequences formed a clade supporting a protoluciferase existing prior to the divergence of the Lampyridae, Elateridae and Phengodidae (Elateroidea). Multiple luciferase genes were identified from members of the Photurinae and the Luciolinae indicating complex gene duplication events within lampyrid genomes. The majority of luciferase residues were identified to be under purifying selection as opposed to positive selection. We conclude that beetle luciferase may have arisen from a process of subfunctionalization as opposed to neofunctionalization early on in the evolution of the Elateroidea. |
Author | Bailey, Mark J. Day, John C. Goodall, Tim I. |
Author_xml | – sequence: 1 givenname: John C. surname: Day fullname: Day, John C. email: jcda@ceh.ac.uk – sequence: 2 givenname: Tim I. surname: Goodall fullname: Goodall, Tim I. – sequence: 3 givenname: Mark J. surname: Bailey fullname: Bailey, Mark J. |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/18951986$$D View this record in MEDLINE/PubMed |
BookMark | eNqFkU-PFCEQxYlZ4_7RT2BiOHnrFrqHpjHxYDa6a7LGy3omNBQjExpaoGczR7-5jDOJNz1RkN-rot67RhchBkDoNSUtJXR4t2sP8wL7tiNkbIloSTc8Q1eUCNYIRvuLY81YwwXpL9F1zjtCKGWCvUCXdKyEGIcr9OvxB2DYR78WFwOOFpf6oAyEg1cFGhvT7MIWLykWcAFbNTt_wLWaAIqH_B5_XX1xiwfsV-0sJJUBbyEAXlRSPm5XyEfeugTWu3pRweCtj0_NU22eX6LnVvkMr87nDfr--dPj7X3z8O3uy-3Hh0Zv2KY0XUc3QgtNtGZKETYNzHbCTLQn08gN0bzbWKo06YEzmAbD1KQ5s0L3hnMN_Q16e-pbV_lZ_1Tk7LIG71WAuGY5DJwxPnb_BbtqNOtHWsH-BOoUc67bySW5WaWDpEQeI5I7-ScieYxIEiGrsqrenNuv0wzmr-acSQU-nACobuwdJJm1g6DBVAd1kSa6fw74DVXaqJg |
CitedBy_id | crossref_primary_10_1039_c0pp00105h crossref_primary_10_1073_pnas_1319300111 crossref_primary_10_1039_c3pp25363e crossref_primary_10_1021_bi1016342 crossref_primary_10_1039_c7pp00110j crossref_primary_10_1111_php_13109 crossref_primary_10_1002_bio_2561 crossref_primary_10_1039_b9pp00078j crossref_primary_10_1002_bio_3273 crossref_primary_10_1186_s12862_018_1251_9 crossref_primary_10_1038_s41598_018_21298_w crossref_primary_10_1098_rspb_2012_1108 crossref_primary_10_1016_j_gene_2009_12_001 crossref_primary_10_1039_c2pp25037c crossref_primary_10_1016_j_cbpb_2011_10_001 crossref_primary_10_1016_j_gene_2016_04_009 crossref_primary_10_1038_s41598_020_72900_z crossref_primary_10_47836_pjtas_44_4_02 crossref_primary_10_1038_srep27638 crossref_primary_10_3897_zookeys_1126_90233 crossref_primary_10_1016_j_gene_2016_09_045 crossref_primary_10_1111_php_12649 crossref_primary_10_1016_j_ijbiomac_2023_123835 crossref_primary_10_1016_j_ympev_2016_12_017 crossref_primary_10_1107_S2059798320013431 crossref_primary_10_1007_s00425_013_2006_x |
Cites_doi | 10.1016/j.gene.2005.10.023 10.1093/beheco/14.1.103 10.1534/genetics.104.037051 10.1093/genetics/154.1.459 10.1111/j.1096-0031.2007.00164.x 10.1111/j.1365-2583.2006.00646.x 10.1093/genetics/139.1.421 10.1002/bio.955 10.1016/j.cbpc.2004.05.012 10.1016/S0014-5793(03)00272-2 10.1016/0020-1790(81)90075-5 10.1086/282840 10.14411/eje.2005.107 10.1128/MCB.7.2.725 10.1093/bioinformatics/bti259 10.1016/j.ympev.2007.05.013 10.2307/3496389 10.1126/science.1146954 10.1093/bioinformatics/btg180 10.1111/j.1096-0031.2003.tb00404.x 10.1093/nar/22.22.4673 10.1046/j.1365-2583.1999.820193.x 10.1093/genetics/151.4.1531 10.1126/science.290.5494.1151 10.1093/bioinformatics/bti263 10.1080/10635150390235520 10.1021/bi7015052 10.1016/S1096-4959(02)00249-X 10.1146/annurev.en.28.010183.001023 10.1016/0022-1910(79)90022-2 10.1016/S0167-4838(96)00211-7 |
ContentType | Journal Article |
Copyright | 2008 Elsevier Inc. |
Copyright_xml | – notice: 2008 Elsevier Inc. |
DBID | CGR CUY CVF ECM EIF NPM AAYXX CITATION 7SS 8FD FR3 P64 RC3 7X8 |
DOI | 10.1016/j.ympev.2008.09.026 |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef Entomology Abstracts (Full archive) Technology Research Database Engineering Research Database Biotechnology and BioEngineering Abstracts Genetics Abstracts MEDLINE - Academic |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef Entomology Abstracts Genetics Abstracts Engineering Research Database Technology Research Database Biotechnology and BioEngineering Abstracts MEDLINE - Academic |
DatabaseTitleList | Entomology Abstracts MEDLINE - Academic MEDLINE |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Biology |
EISSN | 1095-9513 |
EndPage | 101 |
ExternalDocumentID | 10_1016_j_ympev_2008_09_026 18951986 S105579030800465X |
Genre | Journal Article |
GroupedDBID | --- --K --M -~X .~1 0R~ 123 1B1 1RT 1~. 1~5 29M 4.4 457 4G. 53G 5VS 7-5 71M 8P~ 9JM AABNK AABVA AACTN AAEDT AAEDW AAIAV AAIKJ AAKOC AALCJ AALRI AAOAW AAQFI AAQXK AATLK AAXUO ABFNM ABFRF ABGRD ABGSF ABJNI ABMAC ABUDA ABXDB ABYKQ ACDAQ ACGFO ACGFS ACRLP ADBBV ADEZE ADFGL ADMUD ADQTV ADUVX AEBSH AEFWE AEHWI AEKER AENEX AEQOU AFFNX AFKWA AFTJW AFXIZ AGHFR AGRDE AGUBO AGYEJ AHHHB AIEXJ AIKHN AITUG AJBFU AJOXV ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC CAG CBWCG COF CS3 DM4 DOVZS DU5 EBS EFBJH EFLBG EJD EO8 EO9 EP2 EP3 F5P FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q GBLVA HLV HLW HVGLF HZ~ IHE J1W K-O KOM LG5 LW8 LX2 M41 MO0 MVM N9A O-L O9- OAUVE OHT OZT P-8 P-9 P2P PC. Q38 R2- RIG ROL RPZ SAB SBG SCC SDF SDG SDP SES SEW SPCBC SSA SSU SSZ T5K TN5 UNMZH WUQ XJT XPP XSW YK3 ZCG ZKB ZMT ZU3 ~02 ~G- AAHBH AAXKI ADVLN AFJKZ AKRWK CGR CUY CVF ECM EIF NPM AAYXX CITATION 7SS 8FD FR3 P64 RC3 7X8 |
ID | FETCH-LOGICAL-c454t-22149c9c0cc5aa05b65f29db130b87d0c724f1ac03e75eb6d5abc75f9c3d77ce3 |
IEDL.DBID | .~1 |
ISSN | 1055-7903 |
IngestDate | Fri Aug 16 21:47:08 EDT 2024 Sun Sep 29 07:37:26 EDT 2024 Thu Sep 26 19:15:06 EDT 2024 Sat Sep 28 07:47:57 EDT 2024 Fri Feb 23 02:33:15 EST 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 1 |
Keywords | Subfunctionalization Bioluminescence Luciferase Lampyridae Tribolium castaneum Adenylate-forming enzyme superfamily Purifying selection |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c454t-22149c9c0cc5aa05b65f29db130b87d0c724f1ac03e75eb6d5abc75f9c3d77ce3 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
PMID | 18951986 |
PQID | 20265381 |
PQPubID | 23462 |
PageCount | 9 |
ParticipantIDs | proquest_miscellaneous_66755782 proquest_miscellaneous_20265381 crossref_primary_10_1016_j_ympev_2008_09_026 pubmed_primary_18951986 elsevier_sciencedirect_doi_10_1016_j_ympev_2008_09_026 |
PublicationCentury | 2000 |
PublicationDate | 2009 2009-Jan 2009-1-00 20090101 |
PublicationDateYYYYMMDD | 2009-01-01 |
PublicationDate_xml | – year: 2009 text: 2009 |
PublicationDecade | 2000 |
PublicationPlace | United States |
PublicationPlace_xml | – name: United States |
PublicationTitle | Molecular phylogenetics and evolution |
PublicationTitleAlternate | Mol Phylogenet Evol |
PublicationYear | 2009 |
Publisher | Elsevier Inc |
Publisher_xml | – name: Elsevier Inc |
References | Oba, Sato, Inouye (bib28) 2006; 15 Branham, Wenzel (bib5) 2003; 19 Lloyd (bib22) 1983; 28 Strause, DeLuca (bib33) 1981; 11 McDermott (bib1964) 1964; 90 Costa, Vanin, Neto (bib8) 1986; 30 de Wet, Wood, deLuca, Helinski, Subramani (bib12) 1987; 7 Lawrence,J.F., Newton, Jr., A.F., 1995. Families and subfamilies of Coleoptera (with selected genera, notes, references and data on family-group names). In: J. Pakaluk and S.A. Slipinski, (Eds.), Biology, Phylogeny, and Classification of Coleoptera: Papers Celebrating the 80th Birthday of Roy A. Crowson., Museum Instytut Zoologii PAN, Warszawa, pp. 849–861. Ohno (bib30) 1970 Abascal, Zardoya, Posada (bib1) 2005; 21 Choi, Bae, Lee, Kim, Kim, Kim, Kim, Kim, Suzuki, Lee, Sohn, Jin (bib7) 2003; 134 Hall (bib16) 1999; 41 Walsh (bib37) 1995; 139 Hunt, Bergsten, Levkanicova, Papadopoulou, John, Wild, Hammond, Ahrens, Balke, Caterino, Gomez-Zurita, Ribera, Barraclough, Bocakova, Bocak, Vogler (bib18) 2007; 318 Lynch, Force (bib24) 2000; 154 Olivier, E. 1910. Rhagophthalmidae. In: Junk, W., Schenkling, S. (Eds.), Coleopterorum Catalogus Pars vol. 10. Berlin, pp. 1-7. Li, Yang, Liang (bib21) 2006; 27 Strause, DeLuca, Case (bib34) 1979; 25 Stanger-Hall, Lloyd, Hillis (bib32) 2007; 45 Branchini, Ablamsky, Rosenman, Uzasci, Southworth, Zimmer (bib3) 2007; 46 Viviani, Arnoldi, Brochetto-Braga, Ohmiya (bib36) 2004; 139 De Cock, Matthysen (bib11) 2003; 14 Cho, Lee, Choi, Boo (bib6) 1999; 8 Nei, Roychoudhury (bib26) 1973; 107 Crowson (bib9) 1972; 21 Thompson, Higgins, Gibson (bib35) 1994; 22 Day (bib10) 2005; 102 Wittmer, Ohba (bib1994) 1994; 62 Doron-Faigenboim, Stern, Mayrose, Bacharach, Pupko (bib13) 2005; 21 Meyer-Rochow (bib25) 2007; 22 Oba, Sato, Ohta, Inouye (bib29) 2006; 368 Ye, Buck, Schaeffer, Leach (bib38) 1997; 1339 Lynch, Conery (bib23) 2000; 290 Force, Lynch, Pickett, Amores, Yan, Postlethwait (bib14) 1999; 151 Oba, Ojika, Inouye (bib27) 2003; 540 Guindon, Gascuel (bib15) 2003; 52 Bocakova, Bocak, Hunt, Teraväinen, Vogler (bib2) 2007; 23 He, Zhang (bib17) 2005; 169 Kutuzova, G.D., Hannah, R.R., Wood, K.V., 1997. Bioluminescence color variation and kinetic behavior relationships among beetle luciferases. In: Hastings, J.W., L.J, K., Stanley, P.E. (Eds.), Bioluminescence and Chemiluminescence: Molecular Reporting with Photons, Proceedings of the International Symposium on Bioluminescence and Chemiluminescence, 9th, Woods Hole, MA, October, 4–8, 1996. John Wiley, Chichester, pp. 248–252. Ronquist, Huelsenbeck (bib31) 2003; 19 Branham, Wenzel (bib4) 2001; 84 Abascal (10.1016/j.ympev.2008.09.026_bib1) 2005; 21 de Wet (10.1016/j.ympev.2008.09.026_bib12) 1987; 7 Ronquist (10.1016/j.ympev.2008.09.026_bib31) 2003; 19 10.1016/j.ympev.2008.09.026_bib19 Walsh (10.1016/j.ympev.2008.09.026_bib37) 1995; 139 Strause (10.1016/j.ympev.2008.09.026_bib34) 1979; 25 Ye (10.1016/j.ympev.2008.09.026_bib38) 1997; 1339 Choi (10.1016/j.ympev.2008.09.026_bib7) 2003; 134 Nei (10.1016/j.ympev.2008.09.026_bib26) 1973; 107 Viviani (10.1016/j.ympev.2008.09.026_bib36) 2004; 139 De Cock (10.1016/j.ympev.2008.09.026_bib11) 2003; 14 Thompson (10.1016/j.ympev.2008.09.026_bib35) 1994; 22 Oba (10.1016/j.ympev.2008.09.026_bib27) 2003; 540 Costa (10.1016/j.ympev.2008.09.026_bib8) 1986; 30 Meyer-Rochow (10.1016/j.ympev.2008.09.026_bib25) 2007; 22 Guindon (10.1016/j.ympev.2008.09.026_bib15) 2003; 52 Lloyd (10.1016/j.ympev.2008.09.026_bib22) 1983; 28 Lynch (10.1016/j.ympev.2008.09.026_bib23) 2000; 290 Strause (10.1016/j.ympev.2008.09.026_bib33) 1981; 11 Li (10.1016/j.ympev.2008.09.026_bib21) 2006; 27 Oba (10.1016/j.ympev.2008.09.026_bib28) 2006; 15 Hall (10.1016/j.ympev.2008.09.026_bib16) 1999; 41 Branham (10.1016/j.ympev.2008.09.026_bib5) 2003; 19 Bocakova (10.1016/j.ympev.2008.09.026_bib2) 2007; 23 Force (10.1016/j.ympev.2008.09.026_bib14) 1999; 151 10.1016/j.ympev.2008.09.026_bib20 He (10.1016/j.ympev.2008.09.026_bib17) 2005; 169 Branchini (10.1016/j.ympev.2008.09.026_bib3) 2007; 46 Lynch (10.1016/j.ympev.2008.09.026_bib24) 2000; 154 Day (10.1016/j.ympev.2008.09.026_bib10) 2005; 102 10.1016/j.ympev.2008.09.026_bib1910 Stanger-Hall (10.1016/j.ympev.2008.09.026_bib32) 2007; 45 Branham (10.1016/j.ympev.2008.09.026_bib4) 2001; 84 Wittmer (10.1016/j.ympev.2008.09.026_bib1994) 1994; 62 McDermott (10.1016/j.ympev.2008.09.026_bib1964) 1964; 90 Cho (10.1016/j.ympev.2008.09.026_bib6) 1999; 8 Doron-Faigenboim (10.1016/j.ympev.2008.09.026_bib13) 2005; 21 Hunt (10.1016/j.ympev.2008.09.026_bib18) 2007; 318 Ohno (10.1016/j.ympev.2008.09.026_bib30) 1970 Crowson (10.1016/j.ympev.2008.09.026_bib9) 1972; 21 Oba (10.1016/j.ympev.2008.09.026_bib29) 2006; 368 |
References_xml | – volume: 41 start-page: 95 year: 1999 end-page: 98 ident: bib16 article-title: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT publication-title: Nucl. Acids Symp. Ser. contributor: fullname: Hall – volume: 7 start-page: 725 year: 1987 end-page: 737 ident: bib12 article-title: Firefly luciferase gene: structure and expression in mammalian cells publication-title: Mol. Cell. Biol. contributor: fullname: Subramani – volume: 8 start-page: 193 year: 1999 end-page: 200 ident: bib6 article-title: Structural polymorphism of the luciferase gene in the firefly, publication-title: Insect Mol. Biol. contributor: fullname: Boo – volume: 368 start-page: 53 year: 2006 end-page: 60 ident: bib29 article-title: Identification of paralogous genes of firefly luciferase in the Japanese firefly, publication-title: Gene contributor: fullname: Inouye – volume: 154 start-page: 459 year: 2000 end-page: 473 ident: bib24 article-title: The probability of duplicate gene preservation by subfunctionalization publication-title: Genetics contributor: fullname: Force – volume: 22 start-page: 4673 year: 1994 end-page: 4680 ident: bib35 article-title: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice publication-title: Nucl. Acids Res. contributor: fullname: Gibson – volume: 15 start-page: 293 year: 2006 end-page: 299 ident: bib28 article-title: Cloning and characterization of the homologous genes of firefly luciferase in the mealworm beetle, publication-title: Insect Mol. Biol. contributor: fullname: Inouye – volume: 28 start-page: 131 year: 1983 end-page: 160 ident: bib22 article-title: Bioluminescence and communication in insects publication-title: Ann. Rev. Entom. contributor: fullname: Lloyd – volume: 30 start-page: 101 year: 1986 end-page: 104 ident: bib8 article-title: Larvae of neotropical Coleoptera. XIV. First record of bioluminescence in the family Staphylinidae (Xantholinini) publication-title: Revta. Brasil Entomol. contributor: fullname: Neto – volume: 290 start-page: 1151 year: 2000 end-page: 1155 ident: bib23 article-title: The evolutionary fate and consequences of duplicate genes publication-title: Science contributor: fullname: Conery – volume: 52 start-page: 696 year: 2003 end-page: 704 ident: bib15 article-title: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood publication-title: Syst. Biol. contributor: fullname: Gascuel – volume: 107 start-page: 590 year: 1973 end-page: 605 ident: bib26 article-title: Probability of fixation of nonfunctional genes at duplicate loci publication-title: Am. Nat. contributor: fullname: Roychoudhury – volume: 1339 start-page: 39 year: 1997 end-page: 52 ident: bib38 article-title: Cloning and sequencing of a cDNA for firefly luciferase from publication-title: Biochim. Biophys. Acta contributor: fullname: Leach – volume: 540 start-page: 251 year: 2003 end-page: 254 ident: bib27 article-title: Firefly luciferase is a bifunctional enzyme: ATP-dependent monooxygenase and a long chain fatty acyl-CoA synthetase publication-title: FEBS Lett. contributor: fullname: Inouye – volume: 62 start-page: 341 year: 1994 end-page: 355 ident: bib1994 article-title: Neue Rhagophthalmidae (Coleoptera) aus China und benachbarten Ländern publication-title: Jpn. J. Entomol. contributor: fullname: Ohba – volume: 134 start-page: 199 year: 2003 end-page: 214 ident: bib7 article-title: Genomic structure of the luciferase gene and phylogenetic analysis in the publication-title: Comp. Biochem. Physiol. B: Biochem. Mol. Biol. contributor: fullname: Jin – volume: 11 start-page: 417 year: 1981 end-page: 422 ident: bib33 article-title: Characteristics of luciferases from a variety of firefly species: Evidence for the presence of luciferase isozymes publication-title: Insect Biochemistry contributor: fullname: DeLuca – volume: 21 start-page: 2104 year: 2005 end-page: 2105 ident: bib1 article-title: ProtTest: selection of best-fit models of protein evolution publication-title: Bioinformatics contributor: fullname: Posada – volume: 23 start-page: 477 year: 2007 end-page: 496 ident: bib2 article-title: Molecular phylogenetics of Elateriformia (Coleoptera): evolution of bioluminescence and neoteny publication-title: Cladistics contributor: fullname: Vogler – volume: 27 start-page: 367 year: 2006 end-page: 374 ident: bib21 article-title: Phylogenetic relationship of the firefly, publication-title: Zool. Res. contributor: fullname: Liang – volume: 169 start-page: 1157 year: 2005 end-page: 1164 ident: bib17 article-title: Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution publication-title: Genetics contributor: fullname: Zhang – volume: 46 start-page: 13847 year: 2007 end-page: 13855 ident: bib3 article-title: Synergistic mutations produce blue-shifted bioluminescence in firefly luciferase publication-title: Biochemistry contributor: fullname: Zimmer – volume: 22 start-page: 251 year: 2007 end-page: 265 ident: bib25 article-title: Glowworms: a review of publication-title: Luminescence contributor: fullname: Meyer-Rochow – volume: 151 start-page: 1531 year: 1999 end-page: 1545 ident: bib14 article-title: Preservation of duplicate genes by complementary, degenerative mutations publication-title: Genetics contributor: fullname: Postlethwait – volume: 19 start-page: 1572 year: 2003 end-page: 1574 ident: bib31 article-title: MrBayes 3: Bayesian phylogenetic inference under mixed models publication-title: Bioinformatics contributor: fullname: Huelsenbeck – volume: 21 start-page: 35 year: 1972 end-page: 77 ident: bib9 article-title: A review of classification of Cantharoidea (Coleoptera, with the definition of two new families, Cneoglossidae and Omethidae publication-title: Rev. Univ. Madrid contributor: fullname: Crowson – volume: 139 start-page: 151 year: 2004 end-page: 156 ident: bib36 article-title: Cloning and characterization of the cDNA for the Brazilian publication-title: Comp. Biochem. Physiol. B: contributor: fullname: Ohmiya – volume: 90 start-page: 1 year: 1964 end-page: 72 ident: bib1964 article-title: The taxonomy of the Lampyridae (Coleoptera) publication-title: Transactions of the American Entomological Society contributor: fullname: McDermott – volume: 25 start-page: 339 year: 1979 end-page: 348 ident: bib34 article-title: Biochemical and morphological changes accompanying light organ development in the firefly publication-title: J. Insect Phys. contributor: fullname: Case – volume: 318 start-page: 1913 year: 2007 end-page: 1916 ident: bib18 article-title: A Comprehensive Phylogeny of Beetles Reveals the Evolutionary Origins of a Superradiation publication-title: Science contributor: fullname: Vogler – volume: 21 start-page: 2101 year: 2005 end-page: 2103 ident: bib13 article-title: Selecton: a server for detecting evolutionary forces at a single amino-acid site publication-title: Bioinformatics contributor: fullname: Pupko – year: 1970 ident: bib30 article-title: Evolution by Gene Duplication contributor: fullname: Ohno – volume: 84 start-page: 565 year: 2001 end-page: 586 ident: bib4 article-title: The evolution of bioluminescence in cantharoids (Coleoptera: Elateroidea) publication-title: Fla. Entomol. contributor: fullname: Wenzel – volume: 19 start-page: 1 year: 2003 end-page: 22 ident: bib5 article-title: The origin of photic behavior and the evolution of sexual communication in fireflies (Coleoptera: Lampyridae) publication-title: Cladistics contributor: fullname: Wenzel – volume: 139 start-page: 421 year: 1995 end-page: 428 ident: bib37 article-title: How often do duplicated genes evolve new functions publication-title: Genetics contributor: fullname: Walsh – volume: 14 start-page: 103 year: 2003 end-page: 108 ident: bib11 article-title: Glow-worm larvae bioluminescence (Coleoptera: Lampyridae) operates as an aposematic signal upon toads ( publication-title: Behav. Ecol. contributor: fullname: Matthysen – volume: 45 start-page: 33 year: 2007 end-page: 49 ident: bib32 article-title: Phylogeny of North American fireflies (Coleoptera: Lampyridae): Implications for the evolution of light signals publication-title: Mol. Phyl. Evol. contributor: fullname: Hillis – volume: 102 start-page: 787 year: 2005 end-page: 791 ident: bib10 article-title: Characterisation of the luciferase gene and the 5’ upstream region in the European glow-worm publication-title: Eur. J. Entomol. contributor: fullname: Day – volume: 368 start-page: 53 year: 2006 ident: 10.1016/j.ympev.2008.09.026_bib29 article-title: Identification of paralogous genes of firefly luciferase in the Japanese firefly, Luciola cruciata publication-title: Gene doi: 10.1016/j.gene.2005.10.023 contributor: fullname: Oba – volume: 14 start-page: 103 year: 2003 ident: 10.1016/j.ympev.2008.09.026_bib11 article-title: Glow-worm larvae bioluminescence (Coleoptera: Lampyridae) operates as an aposematic signal upon toads (Bufo bufo) publication-title: Behav. Ecol. doi: 10.1093/beheco/14.1.103 contributor: fullname: De Cock – volume: 21 start-page: 35 year: 1972 ident: 10.1016/j.ympev.2008.09.026_bib9 article-title: A review of classification of Cantharoidea (Coleoptera, with the definition of two new families, Cneoglossidae and Omethidae publication-title: Rev. Univ. Madrid contributor: fullname: Crowson – volume: 169 start-page: 1157 year: 2005 ident: 10.1016/j.ympev.2008.09.026_bib17 article-title: Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution publication-title: Genetics doi: 10.1534/genetics.104.037051 contributor: fullname: He – ident: 10.1016/j.ympev.2008.09.026_bib20 – volume: 154 start-page: 459 year: 2000 ident: 10.1016/j.ympev.2008.09.026_bib24 article-title: The probability of duplicate gene preservation by subfunctionalization publication-title: Genetics doi: 10.1093/genetics/154.1.459 contributor: fullname: Lynch – volume: 23 start-page: 477 year: 2007 ident: 10.1016/j.ympev.2008.09.026_bib2 article-title: Molecular phylogenetics of Elateriformia (Coleoptera): evolution of bioluminescence and neoteny publication-title: Cladistics doi: 10.1111/j.1096-0031.2007.00164.x contributor: fullname: Bocakova – volume: 30 start-page: 101 year: 1986 ident: 10.1016/j.ympev.2008.09.026_bib8 article-title: Larvae of neotropical Coleoptera. XIV. First record of bioluminescence in the family Staphylinidae (Xantholinini) publication-title: Revta. Brasil Entomol. contributor: fullname: Costa – volume: 15 start-page: 293 year: 2006 ident: 10.1016/j.ympev.2008.09.026_bib28 article-title: Cloning and characterization of the homologous genes of firefly luciferase in the mealworm beetle, Tenebrio molitor publication-title: Insect Mol. Biol. doi: 10.1111/j.1365-2583.2006.00646.x contributor: fullname: Oba – volume: 139 start-page: 421 year: 1995 ident: 10.1016/j.ympev.2008.09.026_bib37 article-title: How often do duplicated genes evolve new functions publication-title: Genetics doi: 10.1093/genetics/139.1.421 contributor: fullname: Walsh – volume: 22 start-page: 251 year: 2007 ident: 10.1016/j.ympev.2008.09.026_bib25 article-title: Glowworms: a review of Arachnocampa spp. and kin publication-title: Luminescence doi: 10.1002/bio.955 contributor: fullname: Meyer-Rochow – volume: 139 start-page: 151 year: 2004 ident: 10.1016/j.ympev.2008.09.026_bib36 article-title: Cloning and characterization of the cDNA for the Brazilian Cratomorphus distinctus larval firefly luciferase: similarities with European Lampyris noctiluca and Asiatic Pyrocoelia luciferases publication-title: Comp. Biochem. Physiol. B: doi: 10.1016/j.cbpc.2004.05.012 contributor: fullname: Viviani – volume: 540 start-page: 251 year: 2003 ident: 10.1016/j.ympev.2008.09.026_bib27 article-title: Firefly luciferase is a bifunctional enzyme: ATP-dependent monooxygenase and a long chain fatty acyl-CoA synthetase publication-title: FEBS Lett. doi: 10.1016/S0014-5793(03)00272-2 contributor: fullname: Oba – volume: 11 start-page: 417 year: 1981 ident: 10.1016/j.ympev.2008.09.026_bib33 article-title: Characteristics of luciferases from a variety of firefly species: Evidence for the presence of luciferase isozymes publication-title: Insect Biochemistry doi: 10.1016/0020-1790(81)90075-5 contributor: fullname: Strause – volume: 107 start-page: 590 year: 1973 ident: 10.1016/j.ympev.2008.09.026_bib26 article-title: Probability of fixation of nonfunctional genes at duplicate loci publication-title: Am. Nat. doi: 10.1086/282840 contributor: fullname: Nei – ident: 10.1016/j.ympev.2008.09.026_bib1910 – volume: 102 start-page: 787 year: 2005 ident: 10.1016/j.ympev.2008.09.026_bib10 article-title: Characterisation of the luciferase gene and the 5’ upstream region in the European glow-worm Lampyris noctiluca (Coleoptera: Lampyridae) publication-title: Eur. J. Entomol. doi: 10.14411/eje.2005.107 contributor: fullname: Day – volume: 90 start-page: 1 year: 1964 ident: 10.1016/j.ympev.2008.09.026_bib1964 article-title: The taxonomy of the Lampyridae (Coleoptera) publication-title: Transactions of the American Entomological Society contributor: fullname: McDermott – volume: 7 start-page: 725 year: 1987 ident: 10.1016/j.ympev.2008.09.026_bib12 article-title: Firefly luciferase gene: structure and expression in mammalian cells publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.7.2.725 contributor: fullname: de Wet – volume: 21 start-page: 2101 year: 2005 ident: 10.1016/j.ympev.2008.09.026_bib13 article-title: Selecton: a server for detecting evolutionary forces at a single amino-acid site publication-title: Bioinformatics doi: 10.1093/bioinformatics/bti259 contributor: fullname: Doron-Faigenboim – volume: 45 start-page: 33 year: 2007 ident: 10.1016/j.ympev.2008.09.026_bib32 article-title: Phylogeny of North American fireflies (Coleoptera: Lampyridae): Implications for the evolution of light signals publication-title: Mol. Phyl. Evol. doi: 10.1016/j.ympev.2007.05.013 contributor: fullname: Stanger-Hall – volume: 84 start-page: 565 year: 2001 ident: 10.1016/j.ympev.2008.09.026_bib4 article-title: The evolution of bioluminescence in cantharoids (Coleoptera: Elateroidea) publication-title: Fla. Entomol. doi: 10.2307/3496389 contributor: fullname: Branham – volume: 318 start-page: 1913 year: 2007 ident: 10.1016/j.ympev.2008.09.026_bib18 article-title: A Comprehensive Phylogeny of Beetles Reveals the Evolutionary Origins of a Superradiation publication-title: Science doi: 10.1126/science.1146954 contributor: fullname: Hunt – volume: 19 start-page: 1572 year: 2003 ident: 10.1016/j.ympev.2008.09.026_bib31 article-title: MrBayes 3: Bayesian phylogenetic inference under mixed models publication-title: Bioinformatics doi: 10.1093/bioinformatics/btg180 contributor: fullname: Ronquist – volume: 62 start-page: 341 year: 1994 ident: 10.1016/j.ympev.2008.09.026_bib1994 article-title: Neue Rhagophthalmidae (Coleoptera) aus China und benachbarten Ländern publication-title: Jpn. J. Entomol. contributor: fullname: Wittmer – volume: 41 start-page: 95 year: 1999 ident: 10.1016/j.ympev.2008.09.026_bib16 article-title: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT publication-title: Nucl. Acids Symp. Ser. contributor: fullname: Hall – ident: 10.1016/j.ympev.2008.09.026_bib19 – volume: 19 start-page: 1 year: 2003 ident: 10.1016/j.ympev.2008.09.026_bib5 article-title: The origin of photic behavior and the evolution of sexual communication in fireflies (Coleoptera: Lampyridae) publication-title: Cladistics doi: 10.1111/j.1096-0031.2003.tb00404.x contributor: fullname: Branham – volume: 22 start-page: 4673 year: 1994 ident: 10.1016/j.ympev.2008.09.026_bib35 article-title: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice publication-title: Nucl. Acids Res. doi: 10.1093/nar/22.22.4673 contributor: fullname: Thompson – volume: 8 start-page: 193 year: 1999 ident: 10.1016/j.ympev.2008.09.026_bib6 article-title: Structural polymorphism of the luciferase gene in the firefly, Luciola lateralis publication-title: Insect Mol. Biol. doi: 10.1046/j.1365-2583.1999.820193.x contributor: fullname: Cho – volume: 151 start-page: 1531 year: 1999 ident: 10.1016/j.ympev.2008.09.026_bib14 article-title: Preservation of duplicate genes by complementary, degenerative mutations publication-title: Genetics doi: 10.1093/genetics/151.4.1531 contributor: fullname: Force – volume: 290 start-page: 1151 year: 2000 ident: 10.1016/j.ympev.2008.09.026_bib23 article-title: The evolutionary fate and consequences of duplicate genes publication-title: Science doi: 10.1126/science.290.5494.1151 contributor: fullname: Lynch – volume: 27 start-page: 367 year: 2006 ident: 10.1016/j.ympev.2008.09.026_bib21 article-title: Phylogenetic relationship of the firefly, Diaphanes pectinealis, based on DNA sequence and gene structure of luciferase publication-title: Zool. Res. contributor: fullname: Li – volume: 21 start-page: 2104 year: 2005 ident: 10.1016/j.ympev.2008.09.026_bib1 article-title: ProtTest: selection of best-fit models of protein evolution publication-title: Bioinformatics doi: 10.1093/bioinformatics/bti263 contributor: fullname: Abascal – volume: 52 start-page: 696 year: 2003 ident: 10.1016/j.ympev.2008.09.026_bib15 article-title: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood publication-title: Syst. Biol. doi: 10.1080/10635150390235520 contributor: fullname: Guindon – year: 1970 ident: 10.1016/j.ympev.2008.09.026_bib30 contributor: fullname: Ohno – volume: 46 start-page: 13847 year: 2007 ident: 10.1016/j.ympev.2008.09.026_bib3 article-title: Synergistic mutations produce blue-shifted bioluminescence in firefly luciferase publication-title: Biochemistry doi: 10.1021/bi7015052 contributor: fullname: Branchini – volume: 134 start-page: 199 year: 2003 ident: 10.1016/j.ympev.2008.09.026_bib7 article-title: Genomic structure of the luciferase gene and phylogenetic analysis in the Hotaria-group fireflies publication-title: Comp. Biochem. Physiol. B: Biochem. Mol. Biol. doi: 10.1016/S1096-4959(02)00249-X contributor: fullname: Choi – volume: 28 start-page: 131 year: 1983 ident: 10.1016/j.ympev.2008.09.026_bib22 article-title: Bioluminescence and communication in insects publication-title: Ann. Rev. Entom. doi: 10.1146/annurev.en.28.010183.001023 contributor: fullname: Lloyd – volume: 25 start-page: 339 year: 1979 ident: 10.1016/j.ympev.2008.09.026_bib34 article-title: Biochemical and morphological changes accompanying light organ development in the firefly Photuris pennsylvanica publication-title: J. Insect Phys. doi: 10.1016/0022-1910(79)90022-2 contributor: fullname: Strause – volume: 1339 start-page: 39 year: 1997 ident: 10.1016/j.ympev.2008.09.026_bib38 article-title: Cloning and sequencing of a cDNA for firefly luciferase from Photuris pennsylvanica publication-title: Biochim. Biophys. Acta doi: 10.1016/S0167-4838(96)00211-7 contributor: fullname: Ye |
SSID | ssj0011595 |
Score | 2.1091566 |
Snippet | Bioluminescence in beetles is dependent upon the enzyme luciferase. It has been hypothesised luciferase evolved from a fatty acyl-CoA synthetase gene deriving... |
SourceID | proquest crossref pubmed elsevier |
SourceType | Aggregation Database Index Database Publisher |
StartPage | 93 |
SubjectTerms | Adenine - metabolism Adenylate-forming enzyme superfamily Amino Acid Sequence Animals Bioluminescence Coleoptera - classification Coleoptera - enzymology Coleoptera - genetics Elateridae Elateroidea Evolution, Molecular Lampyridae Luciferase Luciferases - chemistry Luciferases - classification Luciferases - genetics Luciferases - metabolism Molecular Sequence Data Phengodidae Phylogeny Purifying selection Sequence Alignment Subfunctionalization Tribolium castaneum |
Title | The evolution of the adenylate-forming protein family in beetles: Multiple luciferase gene paralogues in fireflies and glow-worms |
URI | https://dx.doi.org/10.1016/j.ympev.2008.09.026 https://www.ncbi.nlm.nih.gov/pubmed/18951986 https://search.proquest.com/docview/20265381 https://search.proquest.com/docview/66755782 |
Volume | 50 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3da9swEBelY7CXse4za5vpYY9V4tqSZe0thIbso6VsC-TNSLJUMoIT5qQlL4X957uT5Y3Bsoc92ZizEbrz3e-k0-8IeSuFdpnhllWF14w7L5lOlWUejCdDyizhcUf38iqfzviHuZgfkHF3FgbLKqPvb3168NbxyTDO5nC9WAy_YGtHqZBvBZM8MccT7BCMwKYH97_KPADwhM4rKMxQumMeCjVeO4Cmt7GgUg0Cw8Lfo9M-9Bmi0OQJeRzhIx21IzwiB65-Sh62DSV3z8gP0Dp1t9Gc6MpTwHdUg2_ZLQFUMkSoEKtoYGdY1LRd3qBwZ5wDq2ne0ctYYUiXW4tlLxDlKBiZo0gSHhZ6GpT3MG0e8GtDdV3Rm-Xqjt3Bx5vnZDa5-DqesthkgVku-IalKeRIVtnEWqF1IkwufKoqA7HNFLJKrEy5P9c2yZwUzuSV0MZK4ZXNKimty16Qw3pVu1eEqiLLnUu0krbiQnvDecZFlQmDSU-qe-Ssm9xy3XJplF2R2bcy6CJ2xVQl6KJH8k4B5R8mUYK3__eLbzp1lfCz4A6Irt1q24BQmoOHP98vkUMChQz_PfKy1fPvkRYARlWRv_7fYR2TR-1WFK7fnJDDzfetOwVEszH9YLJ98mA0_vzpGq_vP06vfgI5IPpb |
link.rule.ids | 315,786,790,4043,4521,24144,27956,27957,27958,45620,45714 |
linkProvider | Elsevier |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Lb9swDCa6FMN2Gdo9s_Whw47V4liSZe1WFC3SR3JZC-RmSLI0ZAicYk5a5Nh_XsqWVxRYe-jNMGSDEGnyo0h_BPguhXbMcEvL3GvKnZdUp8pSj8bDAmWW8KGiO55koyt-NhXTDTjq_oUJbZXR97c-vfHW8c4g7ubgejYb_AqjHaUKfCshyRPTV7DJhRzyHmwenp6PJv-KCRixRVP0FIGdMWEd-VDT5rVGdHoTeyrVj4Zk4f8B6ikA2gSiky14FxEkOWyF3IYNV72H1-1MyfUHuEPFE3cTLYosPEGIRzS6l_UccSUNIBXDFWkIGmYVaU84CF4Z59Bw6p9kHJsMyXxlQ-cLBjqCduZI4AlvznrqsN7jznmEsDXRVUl-zxe39BZfXn-Eq5Pjy6MRjXMWqOWCL2maYppklU2sFVonwmTCp6o0GN5MLsvEypT7obYJc1I4k5VCGyuFV5aVUlrHPkGvWlTuCxCVs8y5RCtpSy60N5wzLkomTMh7Ut2Hg25zi-uWTqPo-sz-FI0u4mBMVaAu-pB1CigeWUWBDv_5B_c7dRX4vYQiiK7cYlXjojRDJz98ekWGOVQg-e_D51bPD5LmiEdVnn19qVj78GZ0Ob4oLk4n59_gbVuZCsc5O9Bb_l25XQQ4S7MXDfge-Ov7fA |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+evolution+of+the+adenylate-forming+protein+family+in+beetles%3A+Multiple+luciferase+gene+paralogues+in+fireflies+and+glow-worms&rft.jtitle=Molecular+phylogenetics+and+evolution&rft.au=Day%2C+John+C.&rft.au=Goodall%2C+Tim+I.&rft.au=Bailey%2C+Mark+J.&rft.date=2009&rft.pub=Elsevier+Inc&rft.issn=1055-7903&rft.eissn=1095-9513&rft.volume=50&rft.issue=1&rft.spage=93&rft.epage=101&rft_id=info:doi/10.1016%2Fj.ympev.2008.09.026&rft.externalDocID=S105579030800465X |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1055-7903&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1055-7903&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1055-7903&client=summon |