Genome-wide identification of the CCCH gene family in rose (Rosa chinensis Jacq.) reveals its potential functions

The CCCH(C3H) transcription factor is an important transcription factor in plants in the process of plant development, hormone regulation and under stress. Rose is one of the most important commercial flower crops worldwide. However, there are few reports about the C3H gene of rose and Rosa chinensi...

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Published inBiotechnology, biotechnological equipment Vol. 35; no. 1; pp. 517 - 526
Main Authors Li, Cai-hua, Fang, Qing-xi, Zhang, Wen-Jing, Li, Yu-huan, Zhang, Jin-zhu, Chen, Shuai, Yin, Zhen-Gong, Li, Wei-Jia, Liu, Wen-da, Yi, Zheng, Mu, Zhong-sheng, Du, Ji-dao
Format Journal Article
LanguageEnglish
Published Sofia Taylor & Francis 01.01.2021
Taylor & Francis Ltd
Taylor & Francis Group
Subjects
CCCH
Chromosomes
Cis-acting elements
Collinearity
evolution
Genomes
Nucleotide sequence
Rosa
Rosa chinensis
Subgroups
tissue-specific expression
Transcription factors
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Abstract The CCCH(C3H) transcription factor is an important transcription factor in plants in the process of plant development, hormone regulation and under stress. Rose is one of the most important commercial flower crops worldwide. However, there are few reports about the C3H gene of rose and Rosa chinensis Jacq. The reference genome sequence becomes a valuable source of data for the C3H genes in rose (RcC3Hs). We identified 31 encoding members in total, which were distributed on seven chromosomes and clustered into 11 subgroups in R. chinensis. Each subgroup has similar group-specific features including motifs, gene structure, cis-acting elements and collinearity in R. chinensis and two other species (Arabidopsis thaliana and Oryza sativa L). The RcC3Hs' tissue-specific expression by quantitative real-time PCR (qRT-PCR) showed that the expression of RcC3Hs was higher in roots and leaves compared with other tissues. These results provide a theoretical basis for the follow-up exploration of the functions of RcC3Hs and the molecular breeding of rose. Supplemental data for this article is available online at https://doi.org/10.1080/13102818.2021.1901609 .
AbstractList The CCCH(C3H) transcription factor is an important transcription factor in plants in the process of plant development, hormone regulation and under stress. Rose is one of the most important commercial flower crops worldwide. However, there are few reports about the C3H gene of rose and Rosa chinensis Jacq. The reference genome sequence becomes a valuable source of data for the C3H genes in rose (RcC3Hs). We identified 31 encoding members in total, which were distributed on seven chromosomes and clustered into 11 subgroups in R. chinensis. Each subgroup has similar group-specific features including motifs, gene structure, cis-acting elements and collinearity in R. chinensis and two other species (Arabidopsis thaliana and Oryza sativa L). The RcC3Hs’ tissue-specific expression by quantitative real-time PCR (qRT-PCR) showed that the expression of RcC3Hs was higher in roots and leaves compared with other tissues. These results provide a theoretical basis for the follow-up exploration of the functions of RcC3Hs and the molecular breeding of rose.Supplemental data for this article is available online at https://doi.org/10.1080/13102818.2021.1901609 .
The CCCH(C3H) transcription factor is an important transcription factor in plants in the process of plant development, hormone regulation and under stress. Rose is one of the most important commercial flower crops worldwide. However, there are few reports about the C3H gene of rose and Rosa chinensis Jacq. The reference genome sequence becomes a valuable source of data for the C3H genes in rose (RcC3Hs). We identified 31 encoding members in total, which were distributed on seven chromosomes and clustered into 11 subgroups in R. chinensis. Each subgroup has similar group-specific features including motifs, gene structure, cis-acting elements and collinearity in R. chinensis and two other species (Arabidopsis thaliana and Oryza sativa L). The RcC3Hs' tissue-specific expression by quantitative real-time PCR (qRT-PCR) showed that the expression of RcC3Hs was higher in roots and leaves compared with other tissues. These results provide a theoretical basis for the follow-up exploration of the functions of RcC3Hs and the molecular breeding of rose. Supplemental data for this article is available online at https://doi.org/10.1080/13102818.2021.1901609 .
Author Du, Ji-dao
Zhang, Wen-Jing
Zhang, Jin-zhu
Li, Cai-hua
Li, Yu-huan
Yi, Zheng
Fang, Qing-xi
Chen, Shuai
Liu, Wen-da
Mu, Zhong-sheng
Li, Wei-Jia
Yin, Zhen-Gong
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SubjectTerms CCCH
Chromosomes
Cis-acting elements
Collinearity
evolution
Genomes
Nucleotide sequence
Rosa
Rosa chinensis
Subgroups
tissue-specific expression
Transcription factors
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Title Genome-wide identification of the CCCH gene family in rose (Rosa chinensis Jacq.) reveals its potential functions
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