Phylogenetic relationships in Leymus (Triticeae; Poaceae): Evidence from chloroplast trnH-psbA and mitochondrial coxⅡ intron sequences

Leymus Hochst. is a polyploid genus with a diverse array of morphology, cytology, ecology, and distribution in Triticeae. To investigate the phylogenetic relationships and maternal genome donor of polyploid Leymus, the chloroplast trnH‐psbA region and mitochondrial coxII intron sequences of 33 Leymu...

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Published inJournal of systematics and evolution : JSE Vol. 52; no. 6; pp. 722 - 734
Main Authors SHA, Li-Na, FAN, Xing, ZHANG, Hai-Qin, KANG, Hou-Yang, WANG, Yi, WANG, Xiao-Li, ZHANG, Li, DING, Chun-Bang, YANG, Rui-Wu, ZHOU, Yong-Hong
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Published Beijing Blackwell Publishing Ltd 01.11.2014
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Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Yaan 625014, Sichuan, China%Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China%Department of Biology and Science, Sichuan Agricultural University, Yaan 625014, Sichuan, China
Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China
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Abstract Leymus Hochst. is a polyploid genus with a diverse array of morphology, cytology, ecology, and distribution in Triticeae. To investigate the phylogenetic relationships and maternal genome donor of polyploid Leymus, the chloroplast trnH‐psbA region and mitochondrial coxII intron sequences of 33 Leymus taxa were analyzed with those of 36 diploid perennial species representing 19 basic genomes in Triticeae. The results showed that reticulate evolution occurred in Leymus species, with the cytoplasmic lineage of Leymus contributed by different progenitors. Interspecific relationships of Leymus were also elucidated on the basis of orthologous comparison. Our data suggested that: (i) due to incomplete lineage sorting and/or difference in the pattern of chloroplast and mitochondrial inheritance, the genealogical conflict between the two genealogical patterns suggest the contribution of Psathyrostachys Nevski, Agropyron J. Gaertn, Eremopyrum (Ledeb.) Jaub. & Spach, Pseudoroegneria (Nevski) Á. Löve, Thinopyrum Á. Löve, and Lophopyrum (Host) Á. Löve to the cytoplasmic lineage of Leymus; (ii) there is a close relationship among Leymus species from the same area or neighboring geographic regions; (iii) L. coreanus (Honda) K. B. Jensen & R. R.‐C. Wang, L. duthiei (Stapf) Y. H. Zhou & H. Q. Zhang ex C. Yen, J. L. Yang & B. R. Baum, L. duthiei var. longearistatus (Hack.) Y. H. Zhou & H. Q. Zhang ex C. Yen, J. L. Yang & B. R. Baum, and L. komarovii (Roshev.) C. Yen, J. L. Yang & B. R. Baum are closely related to other Leymus species, and it is reasonable to transfer these species from the genus Hystrix Moench to Leymus; (iv) Leymus species from North America are closely related to L. coreanus from the Russian Far East and L. komarovii from northeast China but are evolutionarily distinct from Leymus species from Central Asia and the Qinghai–Tibet Plateau. The occurrence of multiple origin and introgression could account for the rich diversity and ecological adaptation of Leymus species.
AbstractList Leymus Hochst. is a polyploid genus with a diverse array of morphology, cytology, ecology, and distribution in Triticeae. To investigate the phylogenetic relationships and maternal genome donor of polyploid Leymus, the chloroplast trnH‐psbA region and mitochondrial coxII intron sequences of 33 Leymus taxa were analyzed with those of 36 diploid perennial species representing 19 basic genomes in Triticeae. The results showed that reticulate evolution occurred in Leymus species, with the cytoplasmic lineage of Leymus contributed by different progenitors. Interspecific relationships of Leymus were also elucidated on the basis of orthologous comparison. Our data suggested that: (i) due to incomplete lineage sorting and/or difference in the pattern of chloroplast and mitochondrial inheritance, the genealogical conflict between the two genealogical patterns suggest the contribution of Psathyrostachys Nevski, Agropyron J. Gaertn, Eremopyrum (Ledeb.) Jaub. & Spach, Pseudoroegneria (Nevski) Á. Löve, Thinopyrum Á. Löve, and Lophopyrum (Host) Á. Löve to the cytoplasmic lineage of Leymus; (ii) there is a close relationship among Leymus species from the same area or neighboring geographic regions; (iii) L. coreanus (Honda) K. B. Jensen & R. R.‐C. Wang, L. duthiei (Stapf) Y. H. Zhou & H. Q. Zhang ex C. Yen, J. L. Yang & B. R. Baum, L. duthiei var. longearistatus (Hack.) Y. H. Zhou & H. Q. Zhang ex C. Yen, J. L. Yang & B. R. Baum, and L. komarovii (Roshev.) C. Yen, J. L. Yang & B. R. Baum are closely related to other Leymus species, and it is reasonable to transfer these species from the genus Hystrix Moench to Leymus; (iv) Leymus species from North America are closely related to L. coreanus from the Russian Far East and L. komarovii from northeast China but are evolutionarily distinct from Leymus species from Central Asia and the Qinghai–Tibet Plateau. The occurrence of multiple origin and introgression could account for the rich diversity and ecological adaptation of Leymus species.
Author Li-Na SHA;Xing FAN;Hai-Oin ZHANG;Hou-Yang KANG;Yi WANG;Xiao-Li WANG;Li ZHANG
AuthorAffiliation [1]Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Yaan 625014, Sichuan, China [2]Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China [3]Department of Biology and Science, Sichuan Agricultural University, Yaan 625014, Sichuan, China
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Keywords Leymus
mitochondrial cox
polyploidy
chloroplast trnH-psbA
speciation
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Notes Li-Na SHA[1];Xing FAN[2];Hai-Oin ZHANG[2];Hou-Yang KANG[2];Yi WANG[2];Xiao-Li WANG[3];Li ZHANG[3]
chloroplast trnH-psbA;Leymus;mitochondrial coxⅡ;polyploidy;speciation
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Key Laboratory of Crop Genetic Resources and Improvement, Ministry of Education, Sichuan Agricultural University, Yaan 625014, Sichuan, China%Triticeae Research Institute, Sichuan Agricultural University, Wenjiang 611130, Sichuan, China%Department of Biology and Science, Sichuan Agricultural University, Yaan 625014, Sichuan, China
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Redinbaugh MG, Jones TA, Zhang Y. 2000. Ubiquity of the St chloroplast genome in St-containing Triticeae polyploids. Genome 43: 846-852.
Hochstetter CF. 1848. Nachträglicher Commentar zu meiner Abhandlung: "Aufbau der Graspflanze etc". Flora 7: 105-118.
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Bowden WM. 1964. Cytotaxonomy of the species and interspecies hybrids of the genus Elymus in Canada and neighbouring areas. Canadian Journal of Botany 42: 547-601.
Zhang HQ, Fan X, Sha LN, Zhang C, Yang RW, Zhou YH. 2008. Phylogeny of Hystrix and related genera (Poaceae: Triticeae) based on nuclear rDNA ITS sequences. Plant Biology 10: 635-642.
Felsenstein J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
Yang RW, Zhong MH, Zou XM, Ding CB, Zhang L, Zhou YH. 2012. Phylogenetic relationships between Leymus (Poaceae, Triticeae) and related diploid Triticeae species based on isozyme and genome-specific random amplified polymorphic DNA (RAPD) markers. Plant Biosystems 46: 84-91.
Jakob SS, Blattner FR. 2006. A chloroplast genealogy of Hordeum (Poaceae): Long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference. Molecular Biology and Evolution 23: 1602-1612.
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Yang RW, Tsujimoto H, Ding CB, Zhang L, Wang XL, Zhou YH. 2011. Phylogenetic relationships among Hystrix species and related species based on expressed sequence Taq-polymerase chain reaction. Journal of Systematics and Evolution 49: 65-71.
Svitashev S, Bryngelssonl T, Li XM, Wang RRC. 1998. Genome specific repetitive DNA and RAPD markers for genome identification in Elymus and Hordelymus. Genome 41: 120-128.
Zhi L, Teng ZH. 2005. Classification and geographic distribution of Leymus in China. Bulletin and Botanical Research 25: 22-25.
Yen C, Yang JL, Baum BR. 2009. Synopsis of Leymus Hochst. (Triticeae: Poaceae). Journal of Systematics and Evolution 47: 67-86.
Bödvarsdóttir SK, Anamthawat-Jónsson K. 2003. Isolation, characterization, and analysis of Leymus-specific DNA sequences. Genome 46: 673-682.
Fan X, Sha LN, Dong ZZ, Zhang HQ, Kang HY, Wang Y, Wang XL, Zhang L, Ding CB, Yang RW, Zheng YL, Zhou YH. 2013a. Phylogenetic relationships and Y genome origin in Elymus L. sensu lato (Triticeae; Poaceae) based on single-copy nuclear Acc1 and Pgk1 gene sequences. Molecular Phylogenetics and Evolution 69: 919-928.
Barkworth ME, Atkins RJ. 1984. Leymus Hochst. (Gramineae: Triticeae) in North America: Taxonomy and distribution. American Journal of Botany 71: 609-625.
Fan X, Sha LN, Yang RW, Zhang HQ, Kang HY, Zhang L, Ding CB, Zheng YL, Zhou YH. 2009. Phylogeny and evolutionary history of Leymus (Triticeae; Poaceae) based on a single-copy nuclear gene encoding plastid acetyl-CoA carboxylase. BMC Evolutionary Biology 9: 247.
Zhou XC, Yang XM, Li XQ, Li LH. 2010. Genome origins in Leymus (Poaceae: Triticeae): Evidence of maternal and paternal progenitors and implications for reticulate evolution. Plant Systematics and Evolution 289: 165-179.
Gould FW. 1968. Grass systematics. New York: McGraw-Hill Book Co.
Culumber CM, Larson SR, Jensen KB, Jones TA. 2011. Genetic structure of Eurasian and North American Leymus (Triticeae) wildryes assessed by chloroplast DNA sequences and AFLP profiles. Plant Systematics and Evolution 294: 207-225.
Wang RRC, Jensen KB. 1994. Absence of the J genome in Leymus species (Poaceae: Triticeae): Evidence from DNA hybridization and meiotic pairing. Genome 37: 231-235.
Fan X, Zhang HQ, Sha LN, Zhang L, Yang RW, Ding CB, Zhou YH. 2007. Phylogenetic analysis among Hystrix, Leymus and its affinitive genera (Poaceae: Triticeae) based on the sequences of a gene encoding plastid acetyl-CoA carboxylase. Plant Science 172: 701-707.
Zhang HQ, Yang RW, Dou QW, Tsujimoto H, Zhou YH. 2006. Genome constitutions of Hystrix patula, H. duthiei ssp. duthiei and H. duthiei ssp. longearistata (Poaceae: Triticeae) revealed by meiotic pairing behavior and genomic in situ hybridization. Chromosome Research 14: 595-604.
Mason-Gamer RJ, Orme NL, Anderson CM. 2002. Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome 45: 991-1002.
Sha LN, Fan X, Yang RW, Wang XL, Zhou YH. 2009. Cladistic analysis of the genus Leymus (Triticeae: Poaceae) based on morphological data. Journal of Sichuan Agricultural University 27: 6-13.
Tsujimura M, Mori N, Yamagishi H, Terachi T. 2013. A possible breakage of linkage disequilibrium between mitochondrial and chloroplast genomes during Emmer and Dinkel wheat evolution. Genome 56: 187-193.
Sha LN, Fan X, Yang RW, Kang HY, Ding CB, Zhang L, Zheng YL, Zhou YH. 2010. Phylogenetic relationships between Hystrix and its closely related genera (Triticeae; Poaceae) based on nuclear Acc1, DMC1 and chloroplast trnL-F sequences. Molecular Phylogenetics and Evolution 54: 327-335.
Mahelka V, Kopecký D. 2010. Gene capture from across the grass family in the allohexaploid Elymus repens (L.) Gould (Poaceae, Triticeae) as evidenced by ITS, GBSSI, and molecular cytogenetics. Molecular Biology and Evolution 27: 1370-1390.
Zhang HQ, Zhou YH. 2006. Meiotic pairing behaviour reveals differences in genomic constitution between Hystrix patula and other species of the genus Hystrix Moench (Poaceae: Triticeae). Plant Systematic and Evolution 258: 129-136.
Löve À, Löve D. 1961. Some nomenclatural changes in the European flora I. Species and subraspecific categories. Botaniska Notiser 114: 33-47.
Sang T. 2002. Utility of low-copy nuclear gene sequences in plant phylogenetics. Critical Reviews in Biochemistry and Molecular Biology 37: 121-147.
Wang RRC. 1989
1997; 158
2010; 54
2009; 47
2001; 50
2013b; 50
2000; 43
2007; 265
1976
1964; 42
2006; 170
1961; 114
2000; 2
2001; 88
1998; 41
2006; 258
2005; 25
1984; 95
2010; 27
1989; 32
2007; 172
2006; 23
2013; 56
2002; 45
2013; 50
2003; 46
1984
1982
1994; 37
2001; 17
1980
2011a; 27
1996; 21
2007; 24
2001; 136
1998; 14
2011b; 291
2002; 37
2010; 38
2006; 53
1991; 78
2011
1999; 27
2006; 14
2010; 289
1848; 7
1994
2008; 10
2008; 52
2002
2011; 4
2011; 294
1987; 19
2009; 27
1995; 194
1985; 39
2004; 53
1984; 71
2013a; 69
1954; 76
1965
2009; 9
2005; 54
2008; 46
2005; 92
2009; 4
2011; 49
2012; 46
2012; 44
1968
e_1_2_6_51_1
e_1_2_6_53_1
Zhi L (e_1_2_6_71_1) 2005; 25
e_1_2_6_32_1
e_1_2_6_70_1
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e_1_2_6_72_1
Löve À. (e_1_2_6_27_1) 1984; 95
Yen C (e_1_2_6_64_1) 2011
Pilger R. (e_1_2_6_36_1) 1954; 76
Sha LN (e_1_2_6_45_1) 2009; 27
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Estes JR (e_1_2_6_12_1) 1982
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Hochstetter CF. (e_1_2_6_19_1) 1848; 7
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Löve À (e_1_2_6_28_1) 1961; 114
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Wang RRC (e_1_2_6_59_1) 1994
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Keng YL. (e_1_2_6_24_1) 1965
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Pohl RW. (e_1_2_6_37_1) 1976
e_1_2_6_23_1
Melderis A. (e_1_2_6_33_1) 1980
Swofford DL. (e_1_2_6_50_1) 2002
e_1_2_6_2_1
Tzvelev NN. (e_1_2_6_55_1) 1976
Gould FW. (e_1_2_6_18_1) 1968
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Snippet Leymus Hochst. is a polyploid genus with a diverse array of morphology, cytology, ecology, and distribution in Triticeae. To investigate the phylogenetic...
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SubjectTerms Agropyron
Central Asia
China
chloroplast
chloroplast trnH-psbA
chloroplasts
coxⅡ;polyploidy;speciation
Cytology
diploidy
Ecological adaptation
ecology
Eremopyrum
Interspecific relationships
introgression
introns
Leymus
mitochondrial coxII
North America
phylogeny
plateaus
polyploidy
Psathyrostachys
Pseudoroegneria
Russia
sorting
speciation
Thinopyrum
trnH-psbA;Leymus;mitochondrial
Title Phylogenetic relationships in Leymus (Triticeae; Poaceae): Evidence from chloroplast trnH-psbA and mitochondrial coxⅡ intron sequences
URI http://lib.cqvip.com/qk/94666A/201406/WD908770768866504849524854484856.html
https://api.istex.fr/ark:/67375/WNG-1PJ01M76-P/fulltext.pdf
https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fjse.12097
https://www.proquest.com/docview/1622164866
https://www.proquest.com/docview/1663557300
https://d.wanfangdata.com.cn/periodical/zwflxb201406008
Volume 52
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