Multilocus Sequence Typing of Streptococcus pyogenes and the Relationships between emm Type and Clone
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| Published in | Infection and Immunity Vol. 69; no. 4; pp. 2416 - 2427 |
|---|---|
| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
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Washington, DC
American Society for Microbiology
01.04.2001
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| AbstractList | Multilocus sequence typing (MLST) is a tool that can be used to study the molecular epidemiology and population genetic structure of microorganisms. A MLST scheme was developed for Streptococcus pyogenes and the nucleotide sequences of internal fragments of seven selected housekeeping loci were obtained for 212 isolates. A total of 100 unique combinations of housekeeping alleles (allelic profiles) were identified. The MLST scheme was highly concordant with several other typing methods. The emm type, corresponding to a locus that is subject to host immune selection, was determined for each isolate; of the >150 distinct emm types identified to date, 78 are represented in this report. For a given emm type, the majority of isolates shared five or more of the seven housekeeping alleles. Stable associations between emm type and MLST were documented by comparing isolates obtained decades apart and/or from different continents. For the 33 emm types for which more than one isolate was examined, only five emm types were present on widely divergent backgrounds, differing at four or more of the housekeeping loci. The findings indicate that the majority of emm types examined define clones or clonal complexes. In addition, an MLST database is made accessible to investigators who seek to characterize other isolates of this species via the internet (http://www.mlst.net).Multilocus sequence typing (MLST) is a tool that can be used to study the molecular epidemiology and population genetic structure of microorganisms. A MLST scheme was developed for Streptococcus pyogenes and the nucleotide sequences of internal fragments of seven selected housekeeping loci were obtained for 212 isolates. A total of 100 unique combinations of housekeeping alleles (allelic profiles) were identified. The MLST scheme was highly concordant with several other typing methods. The emm type, corresponding to a locus that is subject to host immune selection, was determined for each isolate; of the >150 distinct emm types identified to date, 78 are represented in this report. For a given emm type, the majority of isolates shared five or more of the seven housekeeping alleles. Stable associations between emm type and MLST were documented by comparing isolates obtained decades apart and/or from different continents. For the 33 emm types for which more than one isolate was examined, only five emm types were present on widely divergent backgrounds, differing at four or more of the housekeeping loci. The findings indicate that the majority of emm types examined define clones or clonal complexes. In addition, an MLST database is made accessible to investigators who seek to characterize other isolates of this species via the internet (http://www.mlst.net). Multilocus sequence typing (MLST) is a tool that can be used to study the molecular epidemiology and population genetic structure of microorganisms. A MLST scheme was developed for Streptococcus pyogenes and the nucleotide sequences of internal fragments of seven selected housekeeping loci were obtained for 212 isolates. A total of 100 unique combinations of housekeeping alleles (allelic profiles) were identified. The MLST scheme was highly concordant with several other typing methods. The emm type, corresponding to a locus that is subject to host immune selection, was determined for each isolate; of the >150 distinct emm types identified to date, 78 are represented in this report. For a given emm type, the majority of isolates shared five or more of the seven housekeeping alleles. Stable associations between emm type and MLST were documented by comparing isolates obtained decades apart and/or from different continents. For the 33 emm types for which more than one isolate was examined, only five emm types were present on widely divergent backgrounds, differing at four or more of the housekeeping loci. The findings indicate that the majority of emm types examined define clones or clonal complexes. In addition, an MLST database is made accessible to investigators who seek to characterize other isolates of this species via the internet (http://www.mlst.net). Multilocus sequence typing (MLST) is a tool that can be used to study the molecular epidemiology and population genetic structure of microorganisms. A MLST scheme was developed for Streptococcus pyogenes and the nucleotide sequences of internal fragments of seven selected housekeeping loci were obtained for 212 isolates. A total of 100 unique combinations of housekeeping alleles (allelic profiles) were identified. The MLST scheme was highly concordant with several other typing methods. The emm type, corresponding to a locus that is subject to host immune selection, was determined for each isolate; of the >150 distinct emm types identified to date, 78 are represented in this report. For a given emm type, the majority of isolates shared five or more of the seven housekeeping alleles. Stable associations between emm type and MLST were documented by comparing isolates obtained decades apart and/or from different continents. For the 33 emm types for which more than one isolate was examined, only five emm types were present on widely divergent backgrounds, differing at four or more of the housekeeping loci. The findings indicate that the majority of emm types examined define clones or clonal complexes. In addition, an MLST database is made accessible to investigators who seek to characterize other isolates of this species via the internet ( http://www.mlst.net ). Classifications Services IAI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue Spotlights in the Current Issue IAI About IAI Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy Connect to IAI IAI RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0019-9567 Online ISSN: 1098-5522 Copyright © 2014 by the American Society for Microbiology. For an alternate route to IAI .asm.org, visit: IAI |
| Author | Awdhesh Kalia Debra E. Bessen John H. Cross Brian G. Spratt Mark C. Enright |
| AuthorAffiliation | Wellcome Trust Centre for the Epidemiology of Infectious Diseases, University of Oxford, Oxford, United Kingdom, 1 and Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 2 |
| AuthorAffiliation_xml | – name: Wellcome Trust Centre for the Epidemiology of Infectious Diseases, University of Oxford, Oxford, United Kingdom, 1 and Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut 2 |
| Author_xml | – sequence: 1 givenname: Mark C. surname: Enright fullname: Enright, Mark C. organization: <!--label omitted: 1-->Wellcome Trust Centre for the Epidemiology of Infectious Diseases, University of Oxford, Oxford, United Kingdom,1 and – sequence: 2 givenname: Brian G. surname: Spratt fullname: Spratt, Brian G. organization: <!--label omitted: 1-->Wellcome Trust Centre for the Epidemiology of Infectious Diseases, University of Oxford, Oxford, United Kingdom,1 and – sequence: 3 givenname: Awdhesh surname: Kalia fullname: Kalia, Awdhesh organization: <!--label omitted: 2-->Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut2 – sequence: 4 givenname: John H. surname: Cross fullname: Cross, John H. organization: <!--label omitted: 2-->Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut2 – sequence: 5 givenname: Debra E. surname: Bessen fullname: Bessen, Debra E. organization: <!--label omitted: 2-->Department of Epidemiology and Public Health, Yale University School of Medicine, New Haven, Connecticut2 |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=14162586$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/11254602$$D View this record in MEDLINE/PubMed |
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| Issue | 4 |
| Keywords | Typing Molecular structure Nucleotide sequence Population structure Population genetics Fragmentation Infection Streptococcaceae Type Streptococcal infection Bacteriosis Molecular epidemiology Nucleotide Bacteria Micrococcales Isolate Population Streptococcus pyogenes Microorganism Clone |
| Language | English |
| License | CC BY 4.0 |
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| Notes | ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 Present address: Department of Infectious Disease Epidemiology, Imperial College School of Medicine, University of London, St. Mary's Campus, London W2 1PG, United Kingdom. Corresponding author. Yale University School of Medicine, Department of Epidemiology & Public Health, 60 College St., Box 208034, New Haven, CT 06520-8034. Phone: (203) 785-4480. Fax: (203) 737-4285. E-mail: debra.bessen@yale.edu. Present address: Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom. |
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| PublicationTitle | Infection and Immunity |
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| PublicationYear | 2001 |
| Publisher | American Society for Microbiology |
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| References | e_1_3_2_27_2 e_1_3_2_28_2 e_1_3_2_29_2 e_1_3_2_20_2 e_1_3_2_21_2 e_1_3_2_22_2 e_1_3_2_23_2 e_1_3_2_24_2 e_1_3_2_25_2 e_1_3_2_9_2 e_1_3_2_15_2 e_1_3_2_8_2 e_1_3_2_16_2 e_1_3_2_7_2 e_1_3_2_17_2 e_1_3_2_6_2 e_1_3_2_18_2 e_1_3_2_19_2 e_1_3_2_30_2 e_1_3_2_32_2 e_1_3_2_10_2 e_1_3_2_31_2 e_1_3_2_5_2 e_1_3_2_11_2 e_1_3_2_34_2 e_1_3_2_4_2 e_1_3_2_12_2 e_1_3_2_33_2 e_1_3_2_3_2 e_1_3_2_13_2 e_1_3_2_36_2 e_1_3_2_2_2 e_1_3_2_14_2 e_1_3_2_35_2 Lancefield R. C. (e_1_3_2_26_2) 1962; 89 |
| References_xml | – ident: e_1_3_2_36_2 doi: 10.1086/514632 – ident: e_1_3_2_15_2 doi: 10.1099/00221287-144-11-3049 – ident: e_1_3_2_5_2 doi: 10.1099/00221287-146-5-1195 – ident: e_1_3_2_9_2 doi: 10.1128/CMR.13.3.470 – ident: e_1_3_2_8_2 doi: 10.1046/j.1365-2958.1998.00658.x – ident: e_1_3_2_14_2 doi: 10.1016/S0966-842X(99)01609-1 – ident: e_1_3_2_34_2 doi: 10.1128/jcm.34.1.196-198.1996 – volume: 89 start-page: 307 year: 1962 ident: e_1_3_2_26_2 article-title: Current knowledge of the type specific M antigens of group A streptococci publication-title: J. Immunol. doi: 10.4049/jimmunol.89.3.307 – ident: e_1_3_2_7_2 doi: 10.1086/314631 – ident: e_1_3_2_10_2 doi: 10.1016/0264-410X(96)00050-3 – ident: e_1_3_2_28_2 doi: 10.1073/pnas.90.10.4384 – ident: e_1_3_2_22_2 doi: 10.1111/j.1365-2958.1993.tb01642.x – ident: e_1_3_2_31_2 doi: 10.1128/iai.63.3.994-1003.1995 – ident: e_1_3_2_30_2 doi: 10.1073/pnas.88.7.2668 – ident: e_1_3_2_2_2 doi: 10.1038/292457a0 – ident: e_1_3_2_12_2 doi: 10.1016/0966-842X(94)90612-2 – ident: e_1_3_2_13_2 doi: 10.1128/JCM.38.3.1008-1015.2000 – ident: e_1_3_2_18_2 doi: 10.1086/514020 – ident: e_1_3_2_27_2 doi: 10.1073/pnas.95.6.3140 – ident: e_1_3_2_29_2 doi: 10.1016/S0960-9822(00)00005-1 – ident: e_1_3_2_20_2 doi: 10.1016/S0169-4758(99)01559-8 – ident: e_1_3_2_21_2 doi: 10.1038/nm0496-437 – ident: e_1_3_2_11_2 doi: 10.1099/00221287-144-3-629 – ident: e_1_3_2_17_2 doi: 10.1073/pnas.98.1.182 – ident: e_1_3_2_32_2 doi: 10.1016/0378-1119(94)90198-8 – ident: e_1_3_2_3_2 doi: 10.1128/jcm.35.5.1231-1235.1997 – ident: e_1_3_2_24_2 doi: 10.1016/S0167-7306(08)60414-7 – ident: e_1_3_2_4_2 doi: 10.1128/jcm.34.4.953-958.1996 – ident: e_1_3_2_35_2 doi: 10.1111/j.1365-2958.1994.tb01301.x – ident: e_1_3_2_16_2 doi: 10.3201/eid0502.990209 – ident: e_1_3_2_19_2 doi: 10.1101/gr.4.5.288 – ident: e_1_3_2_25_2 doi: 10.1016/0966-842X(96)10058-5 – ident: e_1_3_2_6_2 doi: 10.1086/315842 – ident: e_1_3_2_33_2 doi: 10.1128/aem.51.5.873-884.1986 – ident: e_1_3_2_23_2 doi: 10.1006/mpat.1993.1083 |
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Reddit... Multilocus sequence typing (MLST) is a tool that can be used to study the molecular epidemiology and population genetic structure of microorganisms. A MLST... |
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| SubjectTerms | Alleles Antigens, Bacterial Bacterial Outer Membrane Proteins Bacterial Proteins - genetics Bacterial Typing Techniques Bacteriology Biological and medical sciences Carrier Proteins - genetics Chromosome Mapping emm gene Fundamental and applied biological sciences. Psychology Genetics Linkage Disequilibrium Microbiology Molecular Genomics Multilocus sequence typing Pathogenicity, virulence, toxins, bacteriocins, pyrogens, host-bacteria relations, miscellaneous strains Streptococcus pyogenes Streptococcus pyogenes - classification Streptococcus pyogenes - genetics Streptococcus pyogenes - immunology |
| Title | Multilocus Sequence Typing of Streptococcus pyogenes and the Relationships between emm Type and Clone |
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