Novel, diverse RNA viruses from Mediterranean isolates of the phytopathogenic fungus, Rosellinia necatrix: insights into evolutionary biology of fungal viruses

Summary To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy‐nine, eleven fungal isolates tested RNA virus‐positive, with many showing coinfections, indicating a virus i...

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Published inEnvironmental microbiology Vol. 20; no. 4; pp. 1464 - 1483
Main Authors Arjona‐Lopez, Juan Manuel, Telengech, Paul, Jamal, Atif, Hisano, Sakae, Kondo, Hideki, Yelin, Mery Dafny, Arjona‐Girona, Isabel, Kanematsu, Satoko, Lopez‐Herrera, Carlos José, Suzuki, Nobuhiro
Format Journal Article
LanguageEnglish
Published England Wiley Subscription Services, Inc 01.04.2018
Subjects
Biodiversity
Biological evolution
Biology
Double-stranded RNA
evolutionary biology
Fungi
Fusarium
Gene transfer
high-throughput nucleotide sequencing
horizontal gene transfer
Hypovirus
mixed infection
mycoviruses
New species
Nucleic acids
Phytopathogenic fungi
plant pathogenic fungi
proteinases
Ribonucleic acid
RNA
RNA viruses
Rosellinia necatrix
Soil
Soil microorganisms
ssRNA viruses
Surveys
Sympatric populations
sympatry
Viruses
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Abstract Summary To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy‐nine, eleven fungal isolates tested RNA virus‐positive, with many showing coinfections, indicating a virus incidence of 14%, which is slightly lower than that (approximately 20%) previously reported for extensive surveys of over 1000 Japanese R. necatrix isolates. All viral sequences were fully or partially characterized by Sanger and next‐generation sequencing. These sequences appear to represent isolates of various new species spanning at least 6 established or previously proposed families such as Partiti‐, Hypo‐, Megabirna‐, Yado‐kari‐, Fusagra‐ and Fusarividae, as well as a newly proposed family, Megatotiviridae. This observation greatly expands the diversity of R. necatrix viruses, because no hypo‐, fusagra‐ or megatotiviruses were previously reported from R. necatrix. The sequence analyses showed a rare horizontal gene transfer event of the 2A‐like protease domain between a dsRNA (phlegivirus) and a positive‐sense, single‐stranded RNA virus (hypovirus). Moreover, many of the newly detected viruses showed the closest relation to viruses reported from fungi other than R. necatrix, such as Fusarium spp., which are sympatric to R. necatrix. These combined results imply horizontal virus transfer between these soil‐inhabitant fungi.
AbstractList Summary To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy‐nine, eleven fungal isolates tested RNA virus‐positive, with many showing coinfections, indicating a virus incidence of 14%, which is slightly lower than that (approximately 20%) previously reported for extensive surveys of over 1000 Japanese R. necatrix isolates. All viral sequences were fully or partially characterized by Sanger and next‐generation sequencing. These sequences appear to represent isolates of various new species spanning at least 6 established or previously proposed families such as Partiti‐, Hypo‐, Megabirna‐, Yado‐kari‐, Fusagra‐ and Fusarividae, as well as a newly proposed family, Megatotiviridae. This observation greatly expands the diversity of R. necatrix viruses, because no hypo‐, fusagra‐ or megatotiviruses were previously reported from R. necatrix. The sequence analyses showed a rare horizontal gene transfer event of the 2A‐like protease domain between a dsRNA (phlegivirus) and a positive‐sense, single‐stranded RNA virus (hypovirus). Moreover, many of the newly detected viruses showed the closest relation to viruses reported from fungi other than R. necatrix, such as Fusarium spp., which are sympatric to R. necatrix. These combined results imply horizontal virus transfer between these soil‐inhabitant fungi.
To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy‐nine, eleven fungal isolates tested RNA virus‐positive, with many showing coinfections, indicating a virus incidence of 14%, which is slightly lower than that (approximately 20%) previously reported for extensive surveys of over 1000 Japanese R. necatrix isolates. All viral sequences were fully or partially characterized by Sanger and next‐generation sequencing. These sequences appear to represent isolates of various new species spanning at least 6 established or previously proposed families such as Partiti‐, Hypo‐, Megabirna‐, Yado‐kari‐, Fusagra‐ and Fusarividae, as well as a newly proposed family, Megatotiviridae. This observation greatly expands the diversity of R. necatrix viruses, because no hypo‐, fusagra‐ or megatotiviruses were previously reported from R. necatrix. The sequence analyses showed a rare horizontal gene transfer event of the 2A‐like protease domain between a dsRNA (phlegivirus) and a positive‐sense, single‐stranded RNA virus (hypovirus). Moreover, many of the newly detected viruses showed the closest relation to viruses reported from fungi other than R. necatrix, such as Fusarium spp., which are sympatric to R. necatrix. These combined results imply horizontal virus transfer between these soil‐inhabitant fungi.
To reveal mycovirus diversity, we conducted a search of as-yet-unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy-nine, eleven fungal isolates tested RNA virus-positive, with many showing coinfections, indicating a virus incidence of 14%, which is slightly lower than that (approximately 20%) previously reported for extensive surveys of over 1000 Japanese R. necatrix isolates. All viral sequences were fully or partially characterized by Sanger and next-generation sequencing. These sequences appear to represent isolates of various new species spanning at least 6 established or previously proposed families such as Partiti-, Hypo-, Megabirna-, Yado-kari-, Fusagra- and Fusarividae, as well as a newly proposed family, Megatotiviridae. This observation greatly expands the diversity of R. necatrix viruses, because no hypo-, fusagra- or megatotiviruses were previously reported from R. necatrix. The sequence analyses showed a rare horizontal gene transfer event of the 2A-like protease domain between a dsRNA (phlegivirus) and a positive-sense, single-stranded RNA virus (hypovirus). Moreover, many of the newly detected viruses showed the closest relation to viruses reported from fungi other than R. necatrix, such as Fusarium spp., which are sympatric to R. necatrix. These combined results imply horizontal virus transfer between these soil-inhabitant fungi.To reveal mycovirus diversity, we conducted a search of as-yet-unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy-nine, eleven fungal isolates tested RNA virus-positive, with many showing coinfections, indicating a virus incidence of 14%, which is slightly lower than that (approximately 20%) previously reported for extensive surveys of over 1000 Japanese R. necatrix isolates. All viral sequences were fully or partially characterized by Sanger and next-generation sequencing. These sequences appear to represent isolates of various new species spanning at least 6 established or previously proposed families such as Partiti-, Hypo-, Megabirna-, Yado-kari-, Fusagra- and Fusarividae, as well as a newly proposed family, Megatotiviridae. This observation greatly expands the diversity of R. necatrix viruses, because no hypo-, fusagra- or megatotiviruses were previously reported from R. necatrix. The sequence analyses showed a rare horizontal gene transfer event of the 2A-like protease domain between a dsRNA (phlegivirus) and a positive-sense, single-stranded RNA virus (hypovirus). Moreover, many of the newly detected viruses showed the closest relation to viruses reported from fungi other than R. necatrix, such as Fusarium spp., which are sympatric to R. necatrix. These combined results imply horizontal virus transfer between these soil-inhabitant fungi.
To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy‐nine, eleven fungal isolates tested RNA virus‐positive, with many showing coinfections, indicating a virus incidence of 14%, which is slightly lower than that (approximately 20%) previously reported for extensive surveys of over 1000 Japanese R. necatrix isolates. All viral sequences were fully or partially characterized by Sanger and next‐generation sequencing. These sequences appear to represent isolates of various new species spanning at least 6 established or previously proposed families such as Partiti‐ , Hypo‐, Megabirna‐ , Yado‐kari‐, Fusagra‐ and Fusarividae, as well as a newly proposed family, Megatotiviridae. This observation greatly expands the diversity of R. necatrix viruses, because no hypo‐, fusagra‐ or megatotiviruses were previously reported from R. necatrix . The sequence analyses showed a rare horizontal gene transfer event of the 2A‐like protease domain between a dsRNA (phlegivirus) and a positive‐sense, single‐stranded RNA virus (hypovirus). Moreover, many of the newly detected viruses showed the closest relation to viruses reported from fungi other than R. necatrix , such as Fusarium spp., which are sympatric to R. necatrix . These combined results imply horizontal virus transfer between these soil‐inhabitant fungi.
Author Arjona‐Lopez, Juan Manuel
Hisano, Sakae
Kondo, Hideki
Telengech, Paul
Jamal, Atif
Yelin, Mery Dafny
Arjona‐Girona, Isabel
Kanematsu, Satoko
Suzuki, Nobuhiro
Lopez‐Herrera, Carlos José
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  surname: Arjona‐Lopez
  fullname: Arjona‐Lopez, Juan Manuel
  organization: Instituto de Agricultura Sostenible C.S.I.C., Alameda del Obispo
– sequence: 2
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  surname: Telengech
  fullname: Telengech, Paul
  organization: Institute of Plant Science and Resources, Okayama University, Chuo 2‐20‐1
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  surname: Jamal
  fullname: Jamal, Atif
  organization: Crop Diseases Research Institute, National Agricultural Research Centre
– sequence: 4
  givenname: Sakae
  surname: Hisano
  fullname: Hisano, Sakae
  organization: Institute of Plant Science and Resources, Okayama University, Chuo 2‐20‐1
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  surname: Kondo
  fullname: Kondo, Hideki
  organization: Institute of Plant Science and Resources, Okayama University, Chuo 2‐20‐1
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  givenname: Mery Dafny
  surname: Yelin
  fullname: Yelin, Mery Dafny
  organization: Northern Agriculture Research & Development, Migal Galilee Technology Center, P.O.B. 831
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  givenname: Isabel
  surname: Arjona‐Girona
  fullname: Arjona‐Girona, Isabel
  organization: Instituto de Agricultura Sostenible C.S.I.C., Alameda del Obispo
– sequence: 8
  givenname: Satoko
  surname: Kanematsu
  fullname: Kanematsu, Satoko
  organization: Institute of Fruit Tree Science, National Agriculture and Food Research Organization (NARO)
– sequence: 9
  givenname: Carlos José
  surname: Lopez‐Herrera
  fullname: Lopez‐Herrera, Carlos José
  organization: Instituto de Agricultura Sostenible C.S.I.C., Alameda del Obispo
– sequence: 10
  givenname: Nobuhiro
  orcidid: 0000-0003-0097-9856
  surname: Suzuki
  fullname: Suzuki, Nobuhiro
  email: nsuzuki@okayama-u.ac.jp
  organization: Institute of Plant Science and Resources, Okayama University, Chuo 2‐20‐1
BackLink https://www.ncbi.nlm.nih.gov/pubmed/29411500$$D View this record in MEDLINE/PubMed
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Snippet Summary To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix...
To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for...
To reveal mycovirus diversity, we conducted a search of as-yet-unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for...
To reveal mycovirus diversity, we conducted a search of as‐yet‐unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for...
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SubjectTerms Biodiversity
Biological evolution
Biology
Double-stranded RNA
evolutionary biology
Fungi
Fusarium
Gene transfer
high-throughput nucleotide sequencing
horizontal gene transfer
Hypovirus
mixed infection
mycoviruses
New species
Nucleic acids
Phytopathogenic fungi
plant pathogenic fungi
proteinases
Ribonucleic acid
RNA
RNA viruses
Rosellinia necatrix
Soil
Soil microorganisms
ssRNA viruses
Surveys
Sympatric populations
sympatry
Viruses
Title Novel, diverse RNA viruses from Mediterranean isolates of the phytopathogenic fungus, Rosellinia necatrix: insights into evolutionary biology of fungal viruses
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2F1462-2920.14065
https://www.ncbi.nlm.nih.gov/pubmed/29411500
https://www.proquest.com/docview/2025763426
https://www.proquest.com/docview/1999199924
https://www.proquest.com/docview/2067279392
Volume 20
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