Re-evaluating evidence for adaptive mutation rate variation
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| Published in | Nature (London) Vol. 619; no. 7971; pp. E52 - E56 |
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| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
27.07.2023
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| Author | Wang, Long Hurst, Laurence D. Yang, Sihai Ho, Alexander T. |
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| Author_xml | – sequence: 1 givenname: Long orcidid: 0000-0002-7067-0558 surname: Wang fullname: Wang, Long organization: State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University – sequence: 2 givenname: Alexander T. orcidid: 0000-0001-7824-8709 surname: Ho fullname: Ho, Alexander T. organization: The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath – sequence: 3 givenname: Laurence D. orcidid: 0000-0002-1002-1054 surname: Hurst fullname: Hurst, Laurence D. email: l.d.hurst@bath.ac.uk organization: The Milner Centre for Evolution, Department of Biology and Biochemistry, University of Bath – sequence: 4 givenname: Sihai orcidid: 0000-0002-7862-6412 surname: Yang fullname: Yang, Sihai email: sihaiyang@nju.edu.cn organization: State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University |
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| Cites_doi | 10.1371/journal.pbio.3000191 10.1038/nature10995 10.1126/science.6262918 10.1038/s41586-021-04269-6 10.1126/science.abi7489 10.1186/s12859-017-1537-8 10.1093/nar/gkr344 10.1371/journal.pbio.0020029 10.1093/nargab/lqab019 10.1093/molbev/msaa188 10.1093/molbev/mst060 10.1038/s41467-020-14995-6 10.1038/s41586-023-06387-9 10.1534/genetics.118.301721 |
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| References | Chen, Zhang (CR3) 2013; 30 CR5 Ehrlich, Wang (CR15) 1981; 212 Rice (CR14) 2021; 38 Monroe (CR4) 2022; 602 CR9 Stoler, Nekrutenko (CR6) 2021; 3 CR13 CR12 Nakamura (CR7) 2011; 39 De Summa (CR8) 2017; 18 Wang, Baulcombe (CR16) 2020; 11 Chuang, Li (CR1) 2004; 2 Martincorena, Seshasayee, Luscombe (CR2) 2012; 485 Naish (CR10) 2021; 374 Wang (CR11) 2019; 17 35022609 - Nature. 2022 Feb;602(7895):101-105 I Martincorena (6314_CR2) 2012; 485 6314_CR13 6314_CR5 N Stoler (6314_CR6) 2021; 3 M Ehrlich (6314_CR15) 1981; 212 L Wang (6314_CR11) 2019; 17 JG Monroe (6314_CR4) 2022; 602 XZ Chen (6314_CR3) 2013; 30 6314_CR9 K Nakamura (6314_CR7) 2011; 39 M Naish (6314_CR10) 2021; 374 AM Rice (6314_CR14) 2021; 38 Z Wang (6314_CR16) 2020; 11 JH Chuang (6314_CR1) 2004; 2 6314_CR12 S De Summa (6314_CR8) 2017; 18 |
| References_xml | – volume: 17 start-page: e3000191 year: 2019 ident: CR11 article-title: The architecture of intra-organism mutation rate variation in plants publication-title: PLoS Biol. doi: 10.1371/journal.pbio.3000191 contributor: fullname: Wang – volume: 485 start-page: 95 year: 2012 end-page: 98 ident: CR2 article-title: Evidence of non-random mutation rates suggests an evolutionary risk management strategy publication-title: Nature doi: 10.1038/nature10995 contributor: fullname: Luscombe – volume: 212 start-page: 1350 year: 1981 end-page: 1357 ident: CR15 article-title: 5-Methylcytosine in eukaryotic DNA publication-title: Science doi: 10.1126/science.6262918 contributor: fullname: Wang – volume: 602 start-page: 101 year: 2022 end-page: 105 ident: CR4 article-title: Mutation bias reflects natural selection in publication-title: Nature doi: 10.1038/s41586-021-04269-6 contributor: fullname: Monroe – ident: CR12 – ident: CR13 – ident: CR9 – volume: 374 start-page: eabi7489 year: 2021 ident: CR10 article-title: The genetic and epigenetic landscape of the centromeres publication-title: Science doi: 10.1126/science.abi7489 contributor: fullname: Naish – volume: 18 start-page: 119 year: 2017 ident: CR8 article-title: GATK hard filtering: tunable parameters to improve variant calling for next generation sequencing targeted gene panel data publication-title: BMC Bioinform. doi: 10.1186/s12859-017-1537-8 contributor: fullname: De Summa – ident: CR5 – volume: 39 start-page: e90 year: 2011 ident: CR7 article-title: Sequence-specific error profile of Illumina sequencers publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkr344 contributor: fullname: Nakamura – volume: 2 start-page: e29 year: 2004 ident: CR1 article-title: Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome publication-title: PLoS Biol. doi: 10.1371/journal.pbio.0020029 contributor: fullname: Li – volume: 3 start-page: lqab019 year: 2021 ident: CR6 article-title: Sequencing error profiles of Illumina sequencing instruments publication-title: NAR Genom. Bioinform. doi: 10.1093/nargab/lqab019 contributor: fullname: Nekrutenko – volume: 38 start-page: 67 year: 2021 end-page: 83 ident: CR14 article-title: Evidence for strong mutation bias toward, and selection against, U content in SARS-CoV-2: implications for vaccine design publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msaa188 contributor: fullname: Rice – volume: 30 start-page: 1559 year: 2013 end-page: 1562 ident: CR3 article-title: No gene-specific optimization of mutation rate in publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/mst060 contributor: fullname: Zhang – volume: 11 start-page: 1221 year: 2020 ident: CR16 article-title: Transposon age and non-CG methylation publication-title: Nat. Commun. doi: 10.1038/s41467-020-14995-6 contributor: fullname: Baulcombe – ident: 6314_CR9 – volume: 602 start-page: 101 year: 2022 ident: 6314_CR4 publication-title: Nature doi: 10.1038/s41586-021-04269-6 contributor: fullname: JG Monroe – volume: 38 start-page: 67 year: 2021 ident: 6314_CR14 publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/msaa188 contributor: fullname: AM Rice – volume: 2 start-page: e29 year: 2004 ident: 6314_CR1 publication-title: PLoS Biol. doi: 10.1371/journal.pbio.0020029 contributor: fullname: JH Chuang – volume: 39 start-page: e90 year: 2011 ident: 6314_CR7 publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkr344 contributor: fullname: K Nakamura – volume: 11 start-page: 1221 year: 2020 ident: 6314_CR16 publication-title: Nat. Commun. doi: 10.1038/s41467-020-14995-6 contributor: fullname: Z Wang – volume: 18 start-page: 119 year: 2017 ident: 6314_CR8 publication-title: BMC Bioinform. doi: 10.1186/s12859-017-1537-8 contributor: fullname: S De Summa – ident: 6314_CR12 – volume: 485 start-page: 95 year: 2012 ident: 6314_CR2 publication-title: Nature doi: 10.1038/nature10995 contributor: fullname: I Martincorena – volume: 3 start-page: lqab019 year: 2021 ident: 6314_CR6 publication-title: NAR Genom. Bioinform. doi: 10.1093/nargab/lqab019 contributor: fullname: N Stoler – volume: 30 start-page: 1559 year: 2013 ident: 6314_CR3 publication-title: Mol. Biol. Evol. doi: 10.1093/molbev/mst060 contributor: fullname: XZ Chen – volume: 212 start-page: 1350 year: 1981 ident: 6314_CR15 publication-title: Science doi: 10.1126/science.6262918 contributor: fullname: M Ehrlich – ident: 6314_CR13 doi: 10.1038/s41586-023-06387-9 – volume: 374 start-page: eabi7489 year: 2021 ident: 6314_CR10 publication-title: Science doi: 10.1126/science.abi7489 contributor: fullname: M Naish – ident: 6314_CR5 doi: 10.1534/genetics.118.301721 – volume: 17 start-page: e3000191 year: 2019 ident: 6314_CR11 publication-title: PLoS Biol. doi: 10.1371/journal.pbio.3000191 contributor: fullname: L Wang |
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| SubjectTerms | 631/181/735 631/208/737 Arabidopsis Humanities and Social Sciences Matters Arising multidisciplinary Mutation Mutation Rate Science Science (multidisciplinary) Selection, Genetic |
| Title | Re-evaluating evidence for adaptive mutation rate variation |
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