Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning

The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many important PGPR as well as plant pathogens belong to the genus Pseudomonas . There is, however, uncertainty on the divide between beneficial and pa...

Full description

Saved in:
Bibliographic Details
Published inScientific reports Vol. 12; no. 1; p. 10857
Main Authors Poncheewin, Wasin, van Diepeningen, Anne D., van der Lee, Theo A. J., Suarez-Diez, Maria, Schaap, Peter J.
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 27.06.2022
Nature Publishing Group
Nature Portfolio
Subjects
631/114/1305
631/114/1314
631/114/1386
631/114/2164
631/114/2404
631/114/2785
631/326/41/2530
631/326/41/2531
631/326/421
Classification
Computer applications
Genomes
Humanities and Social Sciences
Learning algorithms
Lifestyles
Machine learning
multidisciplinary
Phenotypes
Phyllosphere
Plant bacterial diseases
Plant growth
Pseudomonas
Rhizosphere
Science
Science (multidisciplinary)
Online AccessGet full text

Cover

Abstract The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many important PGPR as well as plant pathogens belong to the genus Pseudomonas . There is, however, uncertainty on the divide between beneficial and pathogenic strains as previously thought to be signifying genomic features have limited power to separate these strains. Here we used the Genome properties (GP) common biological pathways annotation system and Machine Learning (ML) to establish the relationship between the genome wide GP composition and the plant-associated lifestyle of 91 Pseudomonas strains isolated from the rhizosphere and the phyllosphere representing both plant-associated phenotypes. GP enrichment analysis, Random Forest model fitting and feature selection revealed 28 discriminating features. A test set of 75 new strains confirmed the importance of the selected features for classification. The results suggest that GP annotations provide a promising computational tool to better classify the plant-associated lifestyle.
AbstractList The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many important PGPR as well as plant pathogens belong to the genus Pseudomonas. There is, however, uncertainty on the divide between beneficial and pathogenic strains as previously thought to be signifying genomic features have limited power to separate these strains. Here we used the Genome properties (GP) common biological pathways annotation system and Machine Learning (ML) to establish the relationship between the genome wide GP composition and the plant-associated lifestyle of 91 Pseudomonas strains isolated from the rhizosphere and the phyllosphere representing both plant-associated phenotypes. GP enrichment analysis, Random Forest model fitting and feature selection revealed 28 discriminating features. A test set of 75 new strains confirmed the importance of the selected features for classification. The results suggest that GP annotations provide a promising computational tool to better classify the plant-associated lifestyle.
Abstract The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many important PGPR as well as plant pathogens belong to the genus Pseudomonas. There is, however, uncertainty on the divide between beneficial and pathogenic strains as previously thought to be signifying genomic features have limited power to separate these strains. Here we used the Genome properties (GP) common biological pathways annotation system and Machine Learning (ML) to establish the relationship between the genome wide GP composition and the plant-associated lifestyle of 91 Pseudomonas strains isolated from the rhizosphere and the phyllosphere representing both plant-associated phenotypes. GP enrichment analysis, Random Forest model fitting and feature selection revealed 28 discriminating features. A test set of 75 new strains confirmed the importance of the selected features for classification. The results suggest that GP annotations provide a promising computational tool to better classify the plant-associated lifestyle.
The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many important PGPR as well as plant pathogens belong to the genus Pseudomonas . There is, however, uncertainty on the divide between beneficial and pathogenic strains as previously thought to be signifying genomic features have limited power to separate these strains. Here we used the Genome properties (GP) common biological pathways annotation system and Machine Learning (ML) to establish the relationship between the genome wide GP composition and the plant-associated lifestyle of 91 Pseudomonas strains isolated from the rhizosphere and the phyllosphere representing both plant-associated phenotypes. GP enrichment analysis, Random Forest model fitting and feature selection revealed 28 discriminating features. A test set of 75 new strains confirmed the importance of the selected features for classification. The results suggest that GP annotations provide a promising computational tool to better classify the plant-associated lifestyle.
Abstract The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many important PGPR as well as plant pathogens belong to the genus Pseudomonas . There is, however, uncertainty on the divide between beneficial and pathogenic strains as previously thought to be signifying genomic features have limited power to separate these strains. Here we used the Genome properties (GP) common biological pathways annotation system and Machine Learning (ML) to establish the relationship between the genome wide GP composition and the plant-associated lifestyle of 91 Pseudomonas strains isolated from the rhizosphere and the phyllosphere representing both plant-associated phenotypes. GP enrichment analysis, Random Forest model fitting and feature selection revealed 28 discriminating features. A test set of 75 new strains confirmed the importance of the selected features for classification. The results suggest that GP annotations provide a promising computational tool to better classify the plant-associated lifestyle.
ArticleNumber 10857
Author Suarez-Diez, Maria
Poncheewin, Wasin
van der Lee, Theo A. J.
Schaap, Peter J.
van Diepeningen, Anne D.
Author_xml – sequence: 1
  givenname: Wasin
  surname: Poncheewin
  fullname: Poncheewin, Wasin
  organization: Laboratory of Systems and Synthetic Biology, Wageningen University & Research
– sequence: 2
  givenname: Anne D.
  surname: van Diepeningen
  fullname: van Diepeningen, Anne D.
  organization: BU Biointeractions and Plant Health, Wageningen Plant Research, Wageningen University & Research
– sequence: 3
  givenname: Theo A. J.
  surname: van der Lee
  fullname: van der Lee, Theo A. J.
  organization: BU Biointeractions and Plant Health, Wageningen Plant Research, Wageningen University & Research
– sequence: 4
  givenname: Maria
  surname: Suarez-Diez
  fullname: Suarez-Diez, Maria
  organization: Laboratory of Systems and Synthetic Biology, Wageningen University & Research
– sequence: 5
  givenname: Peter J.
  surname: Schaap
  fullname: Schaap, Peter J.
  email: peter.schaap@wur.nl
  organization: Laboratory of Systems and Synthetic Biology, Wageningen University & Research, UNLOCK Large Scale Infrastructure for Microbial Communities, Wageningen University and Research
BookMark eNp9kkuLFDEUhQsZcR7OH3AVcOOmNI9bnWQjSONjYEAXug6p5FZ3mqqkTaqE-fdmugadcWE2Cck5HzeHc9mcxRSxaV4x-pZRod4VYJ1WLeW8ZaCZaOFZc8EpdC0XnJ89Op8316UcaF0d18D0i-ZcdHJDteoumnk72lLCEJydQ4okDWTeIzmONs5tfUku2Bk9GcOAZb4b8V7xreDi05SiLaTM2YZYyFJC3JEdxjRVe05HzHPAQmz0ZLJuHyKSEW2OVfayeT7YseD1w37V_Pj08fv2S3v79fPN9sNt6wDk3CqPyAV4KYVi3nYehOosY4710Glte4QNULDMi16i1DCA6nvppVNe9YyLq-Zm5fpkD-aYw2TznUk2mNNFyjtj65RuREMpSqqp01Az4kL3bIPgoeNUCu6oqqz3K-u49BN6h7F-fHwCffoSw97s0i-juZCMywp48wDI6edSwzRTKA7HmjSmpRi-UUwxYKe5X_8jPaQlxxrVScWVVkJXFV9VLqdSMg5_hmHU3HfErB0xtSPm1BED1SRWU6niuMP8F_0f128q9MA0
CitedBy_id crossref_primary_10_3390_microorganisms11082080
crossref_primary_10_3389_fmicb_2023_1077561
crossref_primary_10_1038_s41467_024_46302_y
crossref_primary_10_1007_s11356_024_33690_3
crossref_primary_10_1007_s13205_023_03755_0
crossref_primary_10_1016_j_pbi_2022_102326
crossref_primary_10_3390_microorganisms12061089
crossref_primary_10_3390_agriculture13081622
Cites_doi 10.3389/fpls.2017.01768
10.1890/13-1821.1
10.1111/1462-2920.12296
10.1104/pp.15.01537
10.1093/nar/gky995
10.1093/nar/gky1080
10.1002/9781118297674.ch54
10.3389/fpls.2017.00049
10.1016/j.pbi.2017.04.018
10.1128/JB.186.9.2724-2734.2004
10.1093/bioinformatics/btz522
10.3389/fmicb.2012.00019
10.3390/agriculture11020163
10.1093/jxb/erv155
10.1016/j.tim.2020.12.002
10.3389/fmicb.2019.01409
10.1038/s41598-019-49216-8
10.3389/fmicb.2015.00811
10.1093/bioinformatics/btx767
10.1271/bbb.62.469
10.1093/nar/29.1.41
10.3390/molecules21050573
10.1038/ismej.2011.202
10.1016/j.tibtech.2020.04.015
10.1111/j.1574-6976.2008.00101.x
10.1007/978-1-4020-6901-7_2
10.1128/MMBR.05017-11
10.1371/journal.ppat.1002132
10.1186/1471-2105-11-119
10.1073/pnas.97.9.4856
10.1038/s41597-019-0263-7
10.1155/2013/762412
10.1128/JB.185.8.2592-2602.2003
10.1023/A:1010933404324
10.1101/gr.215087.116
10.1111/mmi.13384
10.1099/ijsem.0.000760
10.1038/s41396-019-0372-5
10.1128/AEM.71.11.6776-6783.2005
10.3389/fpls.2018.01473
10.1093/nar/gky1013
10.1016/j.micres.2020.126690
10.3389/fpls.2013.00356
10.1093/bioinformatics/btu031
10.1093/nar/gkv1227
10.1146/annurev.micro.61.080706.093357
10.1371/journal.pone.0190279
10.1101/184747
10.1016/j.chembiol.2013.12.011
10.1038/nplants.2015.73
10.3389/fmicb.2019.00573
10.1016/j.febslet.2008.12.052
10.1186/s12864-019-5555-y
10.1186/s12864-021-08093-0
10.1038/srep38699
10.1002/pld3.44
10.1073/pnas.1315107110
10.1111/ppa.12259
10.1093/bbb/zbaa052
10.1128/AEM.01686-06
10.1371/journal.pgen.1002784
10.1186/1471-2180-12-188
10.1007/s10658-019-01799-8
10.1016/j.cropro.2004.01.007
10.3389/fpls.2015.00787
ContentType Journal Article
Copyright The Author(s) 2022
The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Copyright_xml – notice: The Author(s) 2022
– notice: The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
DBID C6C
AAYXX
CITATION
3V.
7X7
7XB
88A
88E
88I
8FE
8FH
8FI
8FJ
8FK
ABUWG
AFKRA
AZQEC
BBNVY
BENPR
BHPHI
CCPQU
DWQXO
FYUFA
GHDGH
GNUQQ
HCIFZ
K9.
LK8
M0S
M1P
M2P
M7P
PIMPY
PQEST
PQQKQ
PQUKI
PRINS
Q9U
7X8
5PM
DOA
DOI 10.1038/s41598-022-14913-4
DatabaseName Springer Nature OA Free Journals
CrossRef
ProQuest Central (Corporate)
Health & Medical Collection
ProQuest Central (purchase pre-March 2016)
Biology Database (Alumni Edition)
Medical Database (Alumni Edition)
Science Database (Alumni Edition)
ProQuest SciTech Collection
ProQuest Natural Science Collection
Hospital Premium Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
ProQuest Central (Alumni)
ProQuest Central
ProQuest Central Essentials
Biological Science Collection
ProQuest Databases
Natural Science Collection
ProQuest One Community College
ProQuest Central Korea
Health Research Premium Collection
Health Research Premium Collection (Alumni)
ProQuest Central Student
SciTech Premium Collection
ProQuest Health & Medical Complete (Alumni)
Biological Sciences
Health & Medical Collection (Alumni Edition)
Medical Database
Science Database
Biological Science Database
Publicly Available Content Database
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Academic
ProQuest One Academic UKI Edition
ProQuest Central China
ProQuest Central Basic
MEDLINE - Academic
PubMed Central (Full Participant titles)
DOAJ: Directory of Open Access Journals
DatabaseTitle CrossRef
Publicly Available Content Database
ProQuest Central Student
ProQuest Central Essentials
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
SciTech Premium Collection
ProQuest One Community College
ProQuest Natural Science Collection
ProQuest Central China
ProQuest Biology Journals (Alumni Edition)
ProQuest Central
Health Research Premium Collection
Health and Medicine Complete (Alumni Edition)
Natural Science Collection
ProQuest Central Korea
Biological Science Collection
ProQuest Medical Library (Alumni)
ProQuest Science Journals (Alumni Edition)
ProQuest Biological Science Collection
ProQuest Central Basic
ProQuest Science Journals
ProQuest One Academic Eastern Edition
ProQuest Hospital Collection
Health Research Premium Collection (Alumni)
Biological Science Database
ProQuest SciTech Collection
ProQuest Hospital Collection (Alumni)
ProQuest Health & Medical Complete
ProQuest Medical Library
ProQuest One Academic UKI Edition
ProQuest One Academic
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList Publicly Available Content Database


CrossRef
Database_xml – sequence: 1
  dbid: C6C
  name: Springer Nature OA Free Journals
  url: http://www.springeropen.com/
  sourceTypes: Publisher
– sequence: 2
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 3
  dbid: BENPR
  name: ProQuest Databases
  url: https://www.proquest.com/central
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 2045-2322
EndPage 10857
ExternalDocumentID oai_doaj_org_article_00e7090c94294239b16e4d4520732c08
10_1038_s41598_022_14913_4
GrantInformation_xml – fundername: Royal Thai Government Scholarship, Thailand
– fundername: Ministerie van Economische Zaken en Klimaat
  grantid: TU16022
  funderid: http://dx.doi.org/10.13039/501100016238
– fundername: Nederlandse Organisatie voor Wetenschappelijk Onderzoek
  grantid: NWO:184.035.007
  funderid: http://dx.doi.org/10.13039/501100003246
– fundername: ;
– fundername: ;
  grantid: NWO:184.035.007
– fundername: ;
  grantid: TU16022
GroupedDBID 0R~
3V.
4.4
53G
5VS
7X7
88A
88E
88I
8FE
8FH
8FI
8FJ
AAFWJ
AAJSJ
AAKDD
ABDBF
ABUWG
ACGFS
ACSMW
ADBBV
ADRAZ
AENEX
AFKRA
AJTQC
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AOIJS
AZQEC
BAWUL
BBNVY
BCNDV
BENPR
BHPHI
BPHCQ
BVXVI
C6C
CCPQU
DIK
DWQXO
EBD
EBLON
EBS
ESX
FYUFA
GNUQQ
GROUPED_DOAJ
GX1
HCIFZ
HH5
HMCUK
HYE
KQ8
LK8
M0L
M1P
M2P
M48
M7P
M~E
NAO
OK1
PIMPY
PQQKQ
PROAC
PSQYO
RIG
RNT
RNTTT
RPM
SNYQT
UKHRP
AAYXX
AFPKN
CITATION
7XB
8FK
K9.
PQEST
PQUKI
PRINS
Q9U
7X8
5PM
ID FETCH-LOGICAL-c447t-8dee234d77381da5d4385a11c1b4599abe46404a1d3b7e794f48bb7d7c8d8b123
IEDL.DBID RPM
ISSN 2045-2322
IngestDate Fri Oct 04 13:12:34 EDT 2024
Tue Sep 17 21:22:00 EDT 2024
Tue Aug 27 04:25:32 EDT 2024
Thu Oct 10 22:49:19 EDT 2024
Fri Aug 23 02:47:36 EDT 2024
Fri Oct 11 20:53:12 EDT 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 1
Language English
License Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c447t-8dee234d77381da5d4385a11c1b4599abe46404a1d3b7e794f48bb7d7c8d8b123
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9237127/
PMID 35760985
PQID 2681289839
PQPubID 2041939
PageCount 1
ParticipantIDs doaj_primary_oai_doaj_org_article_00e7090c94294239b16e4d4520732c08
pubmedcentral_primary_oai_pubmedcentral_nih_gov_9237127
proquest_miscellaneous_2681814112
proquest_journals_2681289839
crossref_primary_10_1038_s41598_022_14913_4
springer_journals_10_1038_s41598_022_14913_4
PublicationCentury 2000
PublicationDate 2022-06-27
PublicationDateYYYYMMDD 2022-06-27
PublicationDate_xml – month: 06
  year: 2022
  text: 2022-06-27
  day: 27
PublicationDecade 2020
PublicationPlace London
PublicationPlace_xml – name: London
PublicationTitle Scientific reports
PublicationTitleAbbrev Sci Rep
PublicationYear 2022
Publisher Nature Publishing Group UK
Nature Publishing Group
Nature Portfolio
Publisher_xml – name: Nature Publishing Group UK
– name: Nature Publishing Group
– name: Nature Portfolio
References LoperJEComparative genomics of plant-associated Pseudomonas spp.: Insights into diversity and inheritance of traits involved in multitrophic interactionsPLOS Genet.20128e10027841:CAS:528:DC%2BC38XhtVars7zF227920733390384
BakkerPAHMBerendsenRLDoornbosRFWintermansPCAPieterseCMJThe rhizosphere revisited: root microbiomicsFront. Plant Sci.20134165165237550593667247
GuptaGPariharSSAhirwarNKSnehiSKSinghVPlant growth promoting rhizobacteria (PGPR): Current and future prospects for development of sustainable agricultureJ. Microb. Biochem. Technol.201570961021:CAS:528:DC%2BC1cXnslekt78%3D
DialloMDPseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenicISME J.201261325133528794021:CAS:528:DC%2BC38XovFylsLg%3D3379638
KobylarzMJSynthesis of L-2, 3-diaminopropionic acid, a siderophore and antibiotic precursorChem. Biol.2014213793881:CAS:528:DC%2BC2cXhs1ajtLg%3D24485762
LeeIKimYOParkS-CChunJOrthoANI: An improved algorithm and software for calculating average nucleotide identityInt. J. Syst. Evol. Microbiol.201666110011031:CAS:528:DC%2BC28XhvVyksr3O26585518
KöhlLOehlFvan der HeijdenMGAAgricultural practices indirectly influence plant productivity and ecosystem services through effects on soil biotaEcol. Appl.2014241842185329210242
Trantas, E. et al. Comparative genomic analysis of multiple strains of two unusual plant pathogens: Pseudomonas corrugata and Pseudomonas mediterranea. Front. Microbiol. 6, (2015).
HassanJAde la Torre-RocheRWhiteJCLewisJDSoil mixture composition alters Arabidopsis susceptibility to Pseudomonas syringae infectionPlant Direct20182e00044e00044312457106508533
BultreysAGheysenIFatmiMSiderophore uses in Pseudomonas syringae identificationPseudomonas syringae Pathovars and Related Pathogens—Identification, Epidemiology and Genomics2008Springer Netherlands213510.1007/978-1-4020-6901-7_2
El-GebaliSThe Pfam protein families database in 2019Nucleic Acids Res.201847D427D4326324024
AznarADellagiANew insights into the role of siderophores as triggers of plant immunity: What can we learn from animals?J. Exp. Bot.201566300130101:CAS:528:DC%2BC2MXitVCqu7jL25934986
KoehorstJJSAPP: Functional genome annotation and analysis through a semantic framework using FAIR principlesBioinformatics201734140114035905645
IlangumaranGSmithDLPlant growth promoting rhizobacteria in amelioration of salinity stress: A systems biology perspectiveFront. Plant Sci.201781768291097335660262
WinsorGLEnhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome databaseNucleic Acids Res.201644D646D6531:CAS:528:DC%2BC2sXhtV2gu7vL26578582
RegnaultTThe gibberellin precursor GA12 acts as a long-distance growth signal in ArabidopsisNat. Plants20151150731:CAS:528:DC%2BC2MXhvFClsLjF27250008
HyattDProdigal: Prokaryotic gene recognition and translation initiation site identificationBMC Bioinform.201011119
AllenJPSnitkinEPincusNBHauserARForest and trees: Exploring bacterial virulence with genome-wide association studies and machine learningTrends Microbiol.2021296216331:CAS:528:DC%2BB3MXpvFOi33455849
RichardsonLJGenome properties in 2019: A new companion database to InterPro for the inference of complete functional attributesNucleic Acids Res.201847D564D5726323913
ThakurMSohalBSRole of elicitors in inducing resistance in plants against pathogen infection: A reviewISRN Biochem.20132013762412762412259697624393000
ShiraishiTKuzuyamaTBiosynthetic pathways and enzymes involved in the production of phosphonic acid natural productsBiosci. Biotechnol. Biochem.202185425233577658
ShaikhSYadavNMarkandeARInteractive potential of Pseudomonas species with plantsJ. Appl. Biol. Biotechnol.202081011111:CAS:528:DC%2BB3MXpt1Cit74%3D
MorroneDGibberellin biosynthesis in bacteria: Separate ent-copalyl diphosphate and ent-kaurene synthases in Bradyrhizobium japonicumFEBS Lett.20095834754801:CAS:528:DC%2BD1MXotlKrsA%3D%3D19121310
YuXDiversity and abundance of phosphonate biosynthetic genes in natureProc. Natl. Acad. Sci. USA201311020759207642013PNAS..11020759Y1:CAS:528:DC%2BC2cXnsVyksg%3D%3D242979323870699
Wen-LingDRehm AmosHCharkowskiAORojasCMCollmerAPseudomonas syringae exchangeable effector loci: Sequence diversity in representative pathovars and virulence function in P. syringae pv. syringae B728aJ. Bacteriol.200318525922602
BackerRPlant growth-promoting rhizobacteria: Context, mechanisms of action, and roadmap to commercialization of biostimulants for sustainable agricultureFront. Plant Sci.201891473304056526206271
KoehorstJJComparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression dataSci. Rep.20166386992016NatSR...638699K1:CAS:528:DC%2BC2sXps1Ojsw%3D%3D279220985138606
RuinelliMBlomJSmitsTHMPothierJFComparative genomics and pathogenicity potential of members of the Pseudomonas syringae species complex on Prunus sppBMC Genom.201920172
van Dam, J. C. J., Koehorst, J. J. J., Vik, J. O., Schaap, P. J. & Suarez-Diez, M. Interoperable genome annotation with GBOL, an extendable infrastructure for functional data mining. bioRxiv 184747 (2017).
GaziADPhylogenetic analysis of a gene cluster encoding an additional, rhizobial-like type III secretion system that is narrowly distributed among Pseudomonas syringae strainsBMC Microbiol.2012121881:CAS:528:DC%2BC3sXnsFaisro%3D229378993574062
Martin. Goal 2: Zero Hunger. United Nations Sustainable Developmenthttps://www.un.org/sustainabledevelopment/hunger/. Accessed 31 Aug 2021.
PasseraANot just a pathogen? Description of a plant-beneficial pseudomonas syringae strainFront. Microbiol.20191014091409312935476598456
LombardiCStructural and functional characterization of the type three secretion system (T3SS) needle of Pseudomonas aeruginosaFront. Microbiol.201910573310012116455054
van DamJCJThe Empusa code generator and its application to GBOL, an extendable ontology for genome annotationSci. Data20196254316858176828702
ArifIBatoolMSchenkPMPlant microbiome engineering: Expected benefits for improved crop growth and resilienceTrends Biotechnol.202038138513961:CAS:528:DC%2BB3cXpslyqsbc%3D32451122
WawrikBKerkhofLKukorJZylstraGEffect of different carbon sources on community composition of bacterial enrichments from soilAppl. Environ. Microbiol.200571677667832005ApEnM..71.6776W1:CAS:528:DC%2BD2MXht1ekur7E162697091287611
SitaramanRPseudomonas spp. as models for plant-microbe interactionsFront. Plant Sci.20156787787264838054586426
ZhangJHarnessing the plant microbiome to promote the growth of agricultural cropsMicrobiol. Res.20212451:CAS:528:DC%2BB3MXjtF2mt74%3D33460987
WarrisSpyPaSWAS: Python-based multi-core CPU and GPU sequence alignmentPLoS ONE201813292935765749749
MelnykRAHossainSSHaneyCHConvergent gain and loss of genomic islands drive lifestyle changes in plant-associated PseudomonasISME J.20191315751588307873966776051
Villarreal-ChiuJFQuinnJPMcGrathJWThe genes and enzymes of phosphonate metabolism by bacteria, and their distribution in the marine environmentFront. Microbiol.2012319191:CAS:528:DC%2BC3sXmtlKit7k%3D223032973266647
Bergstrand, L. H., Neufeld, J. D. & Doxey, A. C. Pygenprop: A Python library for programmatic exploration and comparison of organism Genome Properties. Bioinformatics (2019).
BreimanLRandom forestsMach. Learn.2001455321007.68152
BüttnerDProtein export according to schedule: Architecture, assembly, and regulation of type III secretion systems from plant- and animal-pathogenic bacteriaMicrobiol. Mol. Biol. Rev.201276262226888143372255
Lugtenberg, B. J. J., Malfanova, N., Kamilova, F. & Berg, G. Microbial control of plant root diseases. in Molecular Microbial Ecology of the Rhizosphere 575–586 (Wiley, 2013). https://doi.org/10.1002/9781118297674.ch54.
LiuBZhengDJinQChenLYangJVFDB 2019: A comparative pathogenomic platform with an interactive web interfaceNucleic Acids Res.201947D687D6921:CAS:528:DC%2BC1MXhs1GqtrzI30395255
ErnstDCAndersonMEDownsDMl-2,3-Diaminopropionate generates diverse metabolic stresses in Salmonella entericaMol. Microbiol.20161012102231:CAS:528:DC%2BC28XnsVaiurw%3D270103565384650
BergmanNHPassalacquaKDHannaPCQinZSOperon prediction for sequenced bacterial genomes without experimental informationAppl. Environ. Microbiol.2007738462007ApEnM..73..846B1:CAS:528:DC%2BD2sXltlalsLw%3D17122389
LiawAWienerMClassification and regression by randomForestR News200221822
TrapetPThe Pseudomonas fluorescens siderophore pyoverdine weakens Arabidopsis thaliana defense in favor of growth in iron-deficient conditionsPlant Physiol.20161716756931:CAS:528:DC%2BC28XhsV2ntr%2FO269566664854674
JonesPInterProScan 5: Genome-scale protein function classificationBioinformatics201430123612401:CAS:528:DC%2BC2cXmvFCjsr4%3D244516263998142
BaltrusDADynamic evolution of pathogenicity revealed by sequencing and comparative genomics of 19 pseudomonas syringae isolatesPLoS Pathog.201171:CAS:528:DC%2BC3MXhtVSlt7vO217996643136466
Fasusi, O. A., Cruz, C. & Babalola, O. O. Agricultural sustainability: Microbial biofertilizers in rhizosphere management. Agriculture11, (2021).
HaftDHTIGRFAMs: A protein family resource for the functional identification of proteinsNucleic Acids Res.20012941431:CAS:528:DC%2BD3MXjtlWnsbo%3D1112504429844
BharathiRVivekananthanRHarishSRamanathanASamiyappanRRhizobacteria-based bio-formulations for the management of fruit rot infection in chilliesCrop Prot.200423835843
TimmuskSBehersLMuthoniJMurayaAAronssonA-CPerspectives and challenges of microbial application for crop improvementFront Plant Sci201784949282328395299024
AlfanoJRThe Pseudomonas syringae Hrp pathogenicity island has a tripartite mosaic structure composed of a cluster of type III secretion genes bounded by exchangeable effector and conserved effector loci that contribute to parasitic fitness and pathogenicity in plantsProc. Natl. Acad. Sci. USA200097485648612000PNAS...97.4856A1:CAS:528:DC%2BD3cXivFKju74%3D1078109218322
VisnovskySBUsing multilocus sequence analysis to distinguish pathogenic from saprotroph
JE Loper (14913_CR21) 2012; 8
P Trapet (14913_CR41) 2016; 171
MJ Kobylarz (14913_CR43) 2014; 21
T Regnault (14913_CR54) 2015; 1
S El-Gebali (14913_CR66) 2018; 47
A Kumar (14913_CR15) 2019; 20
B Liu (14913_CR20) 2019; 47
CL Monteil (14913_CR31) 2014; 16
C Lombardi (14913_CR48) 2019; 10
DH Haft (14913_CR64) 2001; 29
RA Melnyk (14913_CR26) 2019; 13
I Lee (14913_CR69) 2016; 66
J Vacheron (14913_CR10) 2013; 4
L Köhl (14913_CR11) 2014; 24
JJ Koehorst (14913_CR62) 2017; 34
I Arif (14913_CR4) 2020; 38
L Breiman (14913_CR28) 2001; 45
JF Villarreal-Chiu (14913_CR35) 2012; 3
O Adachi (14913_CR46) 1998; 62
D Morrone (14913_CR55) 2009; 583
A Liaw (14913_CR71) 2002; 2
J Zhang (14913_CR2) 2021; 245
SB Visnovsky (14913_CR29) 2019; 155
P Jones (14913_CR65) 2014; 30
GL Winsor (14913_CR27) 2016; 44
B Wawrik (14913_CR52) 2005; 71
JCJ van Dam (14913_CR68) 2019; 6
JP Allen (14913_CR30) 2021; 29
D Büttner (14913_CR47) 2012; 76
14913_CR9
M Ruinelli (14913_CR57) 2019; 20
M Thakur (14913_CR53) 2013; 2013
DA Baltrus (14913_CR19) 2011; 7
S Timmusk (14913_CR5) 2017; 8
14913_CR67
R Backer (14913_CR7) 2018; 9
R Bharathi (14913_CR56) 2004; 23
LJ Richardson (14913_CR23) 2018; 47
G Gupta (14913_CR12) 2015; 7
14913_CR70
R Qessaoui (14913_CR16) 2019; 9
D Wen-Ling (14913_CR59) 2003; 185
14913_CR1
14913_CR3
NH Bergman (14913_CR33) 2007; 73
R Sitaraman (14913_CR18) 2015; 6
X Wang (14913_CR45) 2004; 186
A Passera (14913_CR22) 2019; 10
S Koren (14913_CR61) 2017; 27
A Aznar (14913_CR44) 2015; 66
AK White (14913_CR37) 2007; 61
PAHM Bakker (14913_CR8) 2013; 4
MG Lamarche (14913_CR39) 2008; 32
T Shiraishi (14913_CR38) 2021; 85
D Hyatt (14913_CR63) 2010; 11
S Shaikh (14913_CR17) 2020; 8
G Ilangumaran (14913_CR14) 2017; 8
S Warris (14913_CR60) 2018; 13
DC Ernst (14913_CR40) 2016; 101
A Bultreys (14913_CR42) 2008
G Ramkumar (14913_CR34) 2015; 64
JA Hassan (14913_CR32) 2018; 2
OM Finkel (14913_CR13) 2017; 38
JJ Koehorst (14913_CR24) 2016; 6
14913_CR49
D te Molder (14913_CR25) 2021; 22
JR Alfano (14913_CR58) 2000; 97
P Vejan (14913_CR6) 2016; 21
AD Gazi (14913_CR51) 2012; 12
MD Diallo (14913_CR50) 2012; 6
X Yu (14913_CR36) 2013; 110
References_xml – volume: 8
  start-page: 1768
  year: 2017
  ident: 14913_CR14
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2017.01768
  contributor:
    fullname: G Ilangumaran
– volume: 24
  start-page: 1842
  year: 2014
  ident: 14913_CR11
  publication-title: Ecol. Appl.
  doi: 10.1890/13-1821.1
  contributor:
    fullname: L Köhl
– volume: 16
  start-page: 2038
  year: 2014
  ident: 14913_CR31
  publication-title: Environ. Microbiol.
  doi: 10.1111/1462-2920.12296
  contributor:
    fullname: CL Monteil
– volume: 171
  start-page: 675
  year: 2016
  ident: 14913_CR41
  publication-title: Plant Physiol.
  doi: 10.1104/pp.15.01537
  contributor:
    fullname: P Trapet
– volume: 47
  start-page: D427
  year: 2018
  ident: 14913_CR66
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky995
  contributor:
    fullname: S El-Gebali
– volume: 47
  start-page: D687
  year: 2019
  ident: 14913_CR20
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky1080
  contributor:
    fullname: B Liu
– ident: 14913_CR9
  doi: 10.1002/9781118297674.ch54
– volume: 8
  start-page: 49
  year: 2017
  ident: 14913_CR5
  publication-title: Front Plant Sci
  doi: 10.3389/fpls.2017.00049
  contributor:
    fullname: S Timmusk
– volume: 38
  start-page: 155
  year: 2017
  ident: 14913_CR13
  publication-title: Curr. Opin. Plant Biol.
  doi: 10.1016/j.pbi.2017.04.018
  contributor:
    fullname: OM Finkel
– volume: 186
  start-page: 2724
  year: 2004
  ident: 14913_CR45
  publication-title: J. Bacteriol.
  doi: 10.1128/JB.186.9.2724-2734.2004
  contributor:
    fullname: X Wang
– ident: 14913_CR70
  doi: 10.1093/bioinformatics/btz522
– volume: 3
  start-page: 19
  year: 2012
  ident: 14913_CR35
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2012.00019
  contributor:
    fullname: JF Villarreal-Chiu
– ident: 14913_CR3
  doi: 10.3390/agriculture11020163
– volume: 66
  start-page: 3001
  year: 2015
  ident: 14913_CR44
  publication-title: J. Exp. Bot.
  doi: 10.1093/jxb/erv155
  contributor:
    fullname: A Aznar
– volume: 29
  start-page: 621
  year: 2021
  ident: 14913_CR30
  publication-title: Trends Microbiol.
  doi: 10.1016/j.tim.2020.12.002
  contributor:
    fullname: JP Allen
– volume: 10
  start-page: 1409
  year: 2019
  ident: 14913_CR22
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2019.01409
  contributor:
    fullname: A Passera
– volume: 9
  start-page: 12832
  year: 2019
  ident: 14913_CR16
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-49216-8
  contributor:
    fullname: R Qessaoui
– ident: 14913_CR49
  doi: 10.3389/fmicb.2015.00811
– volume: 34
  start-page: 1401
  year: 2017
  ident: 14913_CR62
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btx767
  contributor:
    fullname: JJ Koehorst
– volume: 62
  start-page: 469
  year: 1998
  ident: 14913_CR46
  publication-title: Biosci. Biotechnol. Biochem.
  doi: 10.1271/bbb.62.469
  contributor:
    fullname: O Adachi
– volume: 29
  start-page: 41
  year: 2001
  ident: 14913_CR64
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/29.1.41
  contributor:
    fullname: DH Haft
– volume: 21
  start-page: 573
  year: 2016
  ident: 14913_CR6
  publication-title: Molecules
  doi: 10.3390/molecules21050573
  contributor:
    fullname: P Vejan
– volume: 6
  start-page: 1325
  year: 2012
  ident: 14913_CR50
  publication-title: ISME J.
  doi: 10.1038/ismej.2011.202
  contributor:
    fullname: MD Diallo
– volume: 38
  start-page: 1385
  year: 2020
  ident: 14913_CR4
  publication-title: Trends Biotechnol.
  doi: 10.1016/j.tibtech.2020.04.015
  contributor:
    fullname: I Arif
– volume: 32
  start-page: 461
  year: 2008
  ident: 14913_CR39
  publication-title: FEMS Microbiol. Rev.
  doi: 10.1111/j.1574-6976.2008.00101.x
  contributor:
    fullname: MG Lamarche
– start-page: 21
  volume-title: Pseudomonas syringae Pathovars and Related Pathogens—Identification, Epidemiology and Genomics
  year: 2008
  ident: 14913_CR42
  doi: 10.1007/978-1-4020-6901-7_2
  contributor:
    fullname: A Bultreys
– ident: 14913_CR1
– volume: 76
  start-page: 262
  year: 2012
  ident: 14913_CR47
  publication-title: Microbiol. Mol. Biol. Rev.
  doi: 10.1128/MMBR.05017-11
  contributor:
    fullname: D Büttner
– volume: 7
  year: 2011
  ident: 14913_CR19
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1002132
  contributor:
    fullname: DA Baltrus
– volume: 11
  start-page: 119
  year: 2010
  ident: 14913_CR63
  publication-title: BMC Bioinform.
  doi: 10.1186/1471-2105-11-119
  contributor:
    fullname: D Hyatt
– volume: 97
  start-page: 4856
  year: 2000
  ident: 14913_CR58
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.97.9.4856
  contributor:
    fullname: JR Alfano
– volume: 6
  start-page: 254
  year: 2019
  ident: 14913_CR68
  publication-title: Sci. Data
  doi: 10.1038/s41597-019-0263-7
  contributor:
    fullname: JCJ van Dam
– volume: 2013
  start-page: 762412
  year: 2013
  ident: 14913_CR53
  publication-title: ISRN Biochem.
  doi: 10.1155/2013/762412
  contributor:
    fullname: M Thakur
– volume: 7
  start-page: 096
  year: 2015
  ident: 14913_CR12
  publication-title: J. Microb. Biochem. Technol.
  contributor:
    fullname: G Gupta
– volume: 185
  start-page: 2592
  year: 2003
  ident: 14913_CR59
  publication-title: J. Bacteriol.
  doi: 10.1128/JB.185.8.2592-2602.2003
  contributor:
    fullname: D Wen-Ling
– volume: 45
  start-page: 5
  year: 2001
  ident: 14913_CR28
  publication-title: Mach. Learn.
  doi: 10.1023/A:1010933404324
  contributor:
    fullname: L Breiman
– volume: 27
  start-page: 722
  year: 2017
  ident: 14913_CR61
  publication-title: Genome Res
  doi: 10.1101/gr.215087.116
  contributor:
    fullname: S Koren
– volume: 101
  start-page: 210
  year: 2016
  ident: 14913_CR40
  publication-title: Mol. Microbiol.
  doi: 10.1111/mmi.13384
  contributor:
    fullname: DC Ernst
– volume: 66
  start-page: 1100
  year: 2016
  ident: 14913_CR69
  publication-title: Int. J. Syst. Evol. Microbiol.
  doi: 10.1099/ijsem.0.000760
  contributor:
    fullname: I Lee
– volume: 13
  start-page: 1575
  year: 2019
  ident: 14913_CR26
  publication-title: ISME J.
  doi: 10.1038/s41396-019-0372-5
  contributor:
    fullname: RA Melnyk
– volume: 71
  start-page: 6776
  year: 2005
  ident: 14913_CR52
  publication-title: Appl. Environ. Microbiol.
  doi: 10.1128/AEM.71.11.6776-6783.2005
  contributor:
    fullname: B Wawrik
– volume: 9
  start-page: 1473
  year: 2018
  ident: 14913_CR7
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2018.01473
  contributor:
    fullname: R Backer
– volume: 47
  start-page: D564
  year: 2018
  ident: 14913_CR23
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky1013
  contributor:
    fullname: LJ Richardson
– volume: 245
  year: 2021
  ident: 14913_CR2
  publication-title: Microbiol. Res.
  doi: 10.1016/j.micres.2020.126690
  contributor:
    fullname: J Zhang
– volume: 4
  start-page: 356
  year: 2013
  ident: 14913_CR10
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2013.00356
  contributor:
    fullname: J Vacheron
– volume: 30
  start-page: 1236
  year: 2014
  ident: 14913_CR65
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu031
  contributor:
    fullname: P Jones
– volume: 20
  year: 2019
  ident: 14913_CR15
  publication-title: Biocatal. Agric. Biotechnol.
  contributor:
    fullname: A Kumar
– volume: 44
  start-page: D646
  year: 2016
  ident: 14913_CR27
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv1227
  contributor:
    fullname: GL Winsor
– volume: 61
  start-page: 379
  year: 2007
  ident: 14913_CR37
  publication-title: Annu. Rev. Microbiol.
  doi: 10.1146/annurev.micro.61.080706.093357
  contributor:
    fullname: AK White
– volume: 13
  year: 2018
  ident: 14913_CR60
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0190279
  contributor:
    fullname: S Warris
– ident: 14913_CR67
  doi: 10.1101/184747
– volume: 21
  start-page: 379
  year: 2014
  ident: 14913_CR43
  publication-title: Chem. Biol.
  doi: 10.1016/j.chembiol.2013.12.011
  contributor:
    fullname: MJ Kobylarz
– volume: 1
  start-page: 15073
  year: 2015
  ident: 14913_CR54
  publication-title: Nat. Plants
  doi: 10.1038/nplants.2015.73
  contributor:
    fullname: T Regnault
– volume: 10
  start-page: 573
  year: 2019
  ident: 14913_CR48
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2019.00573
  contributor:
    fullname: C Lombardi
– volume: 583
  start-page: 475
  year: 2009
  ident: 14913_CR55
  publication-title: FEBS Lett.
  doi: 10.1016/j.febslet.2008.12.052
  contributor:
    fullname: D Morrone
– volume: 20
  start-page: 172
  year: 2019
  ident: 14913_CR57
  publication-title: BMC Genom.
  doi: 10.1186/s12864-019-5555-y
  contributor:
    fullname: M Ruinelli
– volume: 22
  start-page: 848
  year: 2021
  ident: 14913_CR25
  publication-title: BMC Genom.
  doi: 10.1186/s12864-021-08093-0
  contributor:
    fullname: D te Molder
– volume: 2
  start-page: 18
  year: 2002
  ident: 14913_CR71
  publication-title: R News
  contributor:
    fullname: A Liaw
– volume: 6
  start-page: 38699
  year: 2016
  ident: 14913_CR24
  publication-title: Sci. Rep.
  doi: 10.1038/srep38699
  contributor:
    fullname: JJ Koehorst
– volume: 2
  start-page: e00044
  year: 2018
  ident: 14913_CR32
  publication-title: Plant Direct
  doi: 10.1002/pld3.44
  contributor:
    fullname: JA Hassan
– volume: 110
  start-page: 20759
  year: 2013
  ident: 14913_CR36
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1315107110
  contributor:
    fullname: X Yu
– volume: 64
  start-page: 63
  year: 2015
  ident: 14913_CR34
  publication-title: Plant. Pathol.
  doi: 10.1111/ppa.12259
  contributor:
    fullname: G Ramkumar
– volume: 8
  start-page: 101
  year: 2020
  ident: 14913_CR17
  publication-title: J. Appl. Biol. Biotechnol.
  contributor:
    fullname: S Shaikh
– volume: 85
  start-page: 42
  year: 2021
  ident: 14913_CR38
  publication-title: Biosci. Biotechnol. Biochem.
  doi: 10.1093/bbb/zbaa052
  contributor:
    fullname: T Shiraishi
– volume: 73
  start-page: 846
  year: 2007
  ident: 14913_CR33
  publication-title: Appl. Environ. Microbiol.
  doi: 10.1128/AEM.01686-06
  contributor:
    fullname: NH Bergman
– volume: 8
  start-page: e1002784
  year: 2012
  ident: 14913_CR21
  publication-title: PLOS Genet.
  doi: 10.1371/journal.pgen.1002784
  contributor:
    fullname: JE Loper
– volume: 12
  start-page: 188
  year: 2012
  ident: 14913_CR51
  publication-title: BMC Microbiol.
  doi: 10.1186/1471-2180-12-188
  contributor:
    fullname: AD Gazi
– volume: 4
  start-page: 165
  year: 2013
  ident: 14913_CR8
  publication-title: Front. Plant Sci.
  contributor:
    fullname: PAHM Bakker
– volume: 155
  start-page: 643
  year: 2019
  ident: 14913_CR29
  publication-title: Eur. J. Plant Pathol.
  doi: 10.1007/s10658-019-01799-8
  contributor:
    fullname: SB Visnovsky
– volume: 23
  start-page: 835
  year: 2004
  ident: 14913_CR56
  publication-title: Crop Prot.
  doi: 10.1016/j.cropro.2004.01.007
  contributor:
    fullname: R Bharathi
– volume: 6
  start-page: 787
  year: 2015
  ident: 14913_CR18
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2015.00787
  contributor:
    fullname: R Sitaraman
SSID ssj0000529419
Score 2.4511015
Snippet The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR). Many...
Abstract The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR)....
Abstract The rhizosphere, the region of soil surrounding roots of plants, is colonized by a unique population of Plant Growth Promoting Rhizobacteria (PGPR)....
SourceID doaj
pubmedcentral
proquest
crossref
springer
SourceType Open Website
Open Access Repository
Aggregation Database
Publisher
StartPage 10857
SubjectTerms 631/114/1305
631/114/1314
631/114/1386
631/114/2164
631/114/2404
631/114/2785
631/326/41/2530
631/326/41/2531
631/326/421
Classification
Computer applications
Genomes
Humanities and Social Sciences
Learning algorithms
Lifestyles
Machine learning
multidisciplinary
Phenotypes
Phyllosphere
Plant bacterial diseases
Plant growth
Pseudomonas
Rhizosphere
Science
Science (multidisciplinary)
SummonAdditionalLinks – databaseName: DOAJ: Directory of Open Access Journals
  dbid: DOA
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV3NaxUxEA9SELyI9QNXq0TwpqHJZjYfxyqWIigeLPQW8rW18LqvdN879L93kt1XuwXx4mUPmyzZZGZ2ftnM_IaQ9xIQsfU2sIh4gYHqW-ZFkkybnkdeCNFjyR3-9l2dnMLXs-7sTqmvEhM20QNPC3fIedbc8mjxw1nI6oJQGRJ0LepmG-c0X9Hd2UxNrN7YW9g5S4ZLcziipyrZZLj3wk2BkAwWnqgS9i9Q5v0YyXsHpdX_HD8hj2fgSI-mF94nD_LwlDycSknePCObWt2yxP3UpabrniK0o1crXDnmZxnkRFcXPY57s8qlx48xb9MaFdGPdKzFIkZaAuHPaaFuvcTHy6_668K5Sv2Q6GWNvMx0LjVx_pycHn_5-fmEzRUVWATQG2ZSzq2EpDU66uS7BNJ0XogoAnTW-pBBAYciraAzmmoPJgSddDTJBHRyL8jesB7yS0KVFZHLJLNQuIPT4G1udbko28de2YZ82K2uu5qIM1w98JbGTbJwKAtXZeGgIZ-KAG57FtLregNVwc2q4P6lCg052InPzZY4urYQrBmLOLAh726b0YbKwYgf8no79TECEHo2RC_EvnihZctw8auycSNC1qLVDfm4U5A_g_99wq_-x4Rfk0dtUWiuWKsPyN7mepvfIEbahLfVHH4DheMMEw
  priority: 102
  providerName: Directory of Open Access Journals
– databaseName: ProQuest Databases
  dbid: BENPR
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1La9wwEBZtQqGX0id1kxYVemtFJFlrSafQlIRQaAilgdyELcnbwMberncP-fedkbUbHGgvPtgyenwjzUgz-oaQT6UCi621DfNgLzBVtZLVIpRMm5Z7joToHu8O_7iozq_U9-vZdT5wG3JY5XZNTAt16D2ekR9JJMoyFvT58fIPw6xR6F3NKTQek30pFLpp909OLy5_7k5Z0I-lhM23ZXhpjgbQWHirDPZgsDkQJVMTjZSI-yfW5sNYyQcO06SHzp6TZ9mApF9HxF-QR7F7SZ6MKSXvXpF1ynKJ8T9pyGnfUjDx6HIBI8jqjEUMdHHTQr13i4glLoe4CT30sB7okJJGDBQD4ucUKVxv4Xc8sl8h9yqtu0BvUwRmpDnlxPw1uTo7_fXtnOXMCswrpdfMhBhlqYLWoLBDPQuqNLNaCC8aNbO2bqKqFFeIWqMjTNlWmabRQXsTTAPK7g3Z6_ouviW0ssLzMpRRVLCT06q2UWp8VLb1bWUL8nk7um45Emi45PgujRuxcICFS1g4VZATBGBXEsmv04t-NXd5LjnOo-aWewu6FPkLG1FFFdRMwnIlPTcFOdzC5_KMHNy9_BTk4-4zzCV0kNRd7DdjGQNyJGRB9AT2SYOmX7qb34mVGyxlLaQuyJetgNxX_u8Ov_t_Ww_IU4miyism9SHZW6828T1YQevmQxb1vyZwB0k
  priority: 102
  providerName: ProQuest
– databaseName: Scholars Portal Open Access Journals
  dbid: M48
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV3fa9UwFA5zIvgi8xdWp0TwTaNJetokDyIqjiFMfPDC3kKbpNfBXbvd3gve_34naTvpmA--9KE5IW2-k54vTfIdQt7kgIytMTVzyBcYlI1klfA5U7rhjkdBdBfPDp_8KI8X8P20ON0jU7qjsQP7W6d2MZ_UYr16_-dy9wkH_MfhyLj-0GMQigfFcFqFfF_kDO6QuxJyiB5_MtL9QetbGhBmPDtze9VZfEoy_jPueXPn5I3l0xSVjg7Ig5FO0s8D_g_JXmgfkXtDgsndY7JJOS_jbqAEAO0aioSPXqywP1k1IhM8XZ012O5uFaLFzz5sfYfuWfW0Tykkehq3xy9pFHQ9x-rxB_46KrHSqvX0PO3HDHRMQLF8QhZH3359PWZjngXmANSGaR-CzMErheHbV4WHXBeVEE7UUBhT1QFK4BAxrFXAAdyArmvlldNe1xj6npL9tmvDM0JLIxzPfR5EifM6BZUJUsVLaRrXlCYjb6fetReDnIZNy-C5tgMWFrGwCQsLGfkSAbi2jFLY6Ua3XtpxZFnOg-KGO4ORNaoZ1qIM4KGQ-PGSjuuMHE7w2cm9rIyya9ogO8zI6-tiHFlxuaRqQ7cdbLQAJKQZUTPYZw80L2nPfieNbuTNSkiVkXeTg_xt_N8v_Pz_zF-Q-zK6Li-ZVIdkf7PehpfIkTb1q-T4V57mDT0
  priority: 102
  providerName: Scholars Portal
– databaseName: Springer Nature OA Free Journals
  dbid: C6C
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1Nb9QwELWgCIkLKl8itCAjcQMLO5n449iuqCokEAcq9WYltlMqbbNVs3vov--Mk12Uqhy45JDYcuI3zjx77DeMfaoAGVvnWhGQLwjQXSkaFSthbCeDJEH0QGeHf_zUp2fw_bw-n2Ry6CzMLH5f2a8DOhg6BIZTJuTyqhLwmD2plZZkwQu92K2nUMQKlJvOxTxcdeZ7skT_jFfe3xV5LzSaPc7JPns-UUV-NGL7gj1K_Uv2dEweefuKrXM-S9rpkzuXrzqOZI5fL7GvRDP1eop8edlhu7fLRCV-DWkTV2h6zcCHnB5i4LT1_YKTWOsVVqfF-RtSWeVNH_lV3muZ-JRc4uI1Ozv59ntxKqYcCiIAmLWwMaWygmgMuubY1BEqWzdKBdVC7VzTJtAggfBpTcLB2YFtWxNNsNG26NbesL1-1ae3jGungqxilZTGOZuBxqXS0EW7LnTaFezztnf99SiV4XOIu7J-xMIjFj5j4aFgxwTAriTJXOcbiL6fRo2XMhnpZHDoNUmpsFU6QYS6xB9TGaQt2OEWPj-NvcGXJKlmHTK_gn3cPcZRQ6GQpk-rzVjGKkCyWTAzg332QvMn_eWfrL-NnNio0hTsy9ZA_jb-7w9-93_FD9izkkxXalGaQ7a3vtmk98h_1u2HbPh3bTT-ow
  priority: 102
  providerName: Springer Nature
Title Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning
URI https://link.springer.com/article/10.1038/s41598-022-14913-4
https://www.proquest.com/docview/2681289839
https://search.proquest.com/docview/2681814112
https://pubmed.ncbi.nlm.nih.gov/PMC9237127
https://doaj.org/article/00e7090c94294239b16e4d4520732c08
Volume 12
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3da9swEBdtx2Avo_tibrugwd42NZIl6-NxDS1lkBLGCnkztiRngcQOcfLQ_34n2e6awl72YrAtI1l35_uddfodQl-4AMRWmZJYwAtEyColBXOcKF1RSwMhug17h6d38vZe_Jhn8yOUDXthYtK-LZeX9Wp9WS9_x9zKzdqOhzyx8Ww6AVCiGMTsx-hYcf4kRO8IvVMjmOk3yFCuxy04qbCRDMIuiAcYJ6EYDwegTU0oofzEH0Xa_gOs-TxT8tlyafRCN6fodQ8f8fdumG_Qka_fopddQcmHd2gXa1yG7J844bipMAA8vFnB_JGil4R3eLWsoN-HlQ8tZq3fuwbUsWhxG0tGtDikwy9wIHBdw-Phh_02MK_ionZ4HfMvPe4LTizeo_ub61-TW9LXVSBWCLUj2nmfcuGUAnftiswJrrOCMctKkRlTlF5IQUWQWak8GGwldFkqp6x2ugRX9wGd1E3tPyIsDbOUO-6ZhDhOicL4VIWDNJWtpEnQ12F2801Hn5HHZW-u804sOYglj2LJRYKuggAeWwbq63ih2S7yXgFySr2ihloDnjSwF5ZMeuFElsLHKrVUJ-hiEF_e22Obp4FmTRtAgwn6_HgbLCksjxS1b_ZdG80EANAEqQOxHwzo8A6oaOTk7lUyQd8GBfnb-b9f-Oy_OzpHr9Kg0FSSVF2gk9127z8BPNqVIzCKuRqhF1fXd7OfcDaRk1H81QDHqdCjaC5_AHoEE_g
link.rule.ids 230,315,733,786,790,870,891,2115,12083,21416,24346,27955,27956,31752,31753,33777,33778,41153,42222,43343,43838,51609,53825,53827,74100,74657
linkProvider National Library of Medicine
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELagCMEF8RShBYzEDazasTe2TwgQ1QJtxaGV9mYltrOttE2Wze6h_74zTnarVIJLDokjP76xZ-wZf0PIR6nAYqttxTzYC0wVdc5KESTTpuaeIyG6x7vDJ6fF9Fz9mk1mw4FbN4RVbtfEtFCH1uMZ-WGORFnGgj7_svzLMGsUeleHFBr3yQMlpUI51zO9O2NBL5YSdrgrw6U57EBf4Z0y2IHB1kBIpkb6KNH2j2zNu5GSd9ylSQsdPSVPBvORfu3xfkbuxeY5edgnlLx-QdYpxyVG_6QBp21NwcCjywWMHysHJGKgi8sa6r1eRCzxp4ub0EL_yo52KWVERzEcfk6RwPUKfscD-xUyr9KyCfQqxV9GOiScmL8k50c_zr5P2ZBXgXml9JqZEGMuVdAa1HUoJ0FJMymF8KJSE2vLKqpCcYWYVTrChK2VqSodtDfBVKDqXpG9pm3ia0ILKzyXQUZRwD5Oq9LGXOOjsLWvC5uRT9vRdcuePsMlt7c0rsfCARYuYeFURr4hALuSSH2dXrSruRtmkuM8am65t6BJkb2wEkVUQU1yWKxyz01GDrbwuWE-du5WejLyYfcZZhK6R8omtpu-jBEKDNCM6BHsowaNvzSXF4mTG-xkLXKdkc9bAbmt_N8dfvP_tr4nj6ZnJ8fu-Ofp733yOEex5QXL9QHZW6828S3YQ-vqXRL6GzZYCNA
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELagCMQF8RRpCxiJG1hrJ05snxCvVXlVPVBpb1ZiO0ulbbJsdg_998w43q22ElxySBz58Y09Y8_4G0LeFBIsttY0zIG9wGTV5qwWvmBKt9xxJER3eHf452l1ci6_zcpZin8aUljldk2MC7XvHZ6RT3IkytIG9PmkTWERZ5-n75d_GGaQQk9rSqdxm9wBLckxjYOaqd15C3q0pDDp3gwv9GQA3YX3y2A3BtsEUTC5p5sihf-e3XkzavKG6zRqpOlD8iCZkvTDiP0jcit0j8ndMbnk1ROyjvkuMRIoDj7tWwrGHl0uYCxZnVAJni4uWqj3ahGwxNkQNr6H_tUDHWL6iIFiaPycIpnrJfyOh_crZGGldefpZYzFDDQln5g_JefTL78-nbCUY4E5KdWaaR9CXkivFKhuX5deFrqshXCikaUxdRNkJblE_BoVYPK2UjeN8spprxtQe8_IQdd34TmhlRGOF74IooI9nZK1CbnCR2Va11YmI2-3o2uXI5WGjS7wQtsRCwtY2IiFlRn5iADsSiINdnzRr-Y2zSrLeVDccGdAqyKTYSOqIL0sc1i4csd1Ro638Nk0Nwd7LUkZeb37DLMKXSV1F_rNWEYLCcZoRtQe7HsN2v_SXfyO_NxgMyuRq4y82wrIdeX_7vDh_9v6itwDebc_vp5-PyL3c5RaXrFcHZOD9WoTXoBptG5eRpn_C4UiDPw
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Classification+of+the+plant-associated+lifestyle+of+Pseudomonas+strains+using+genome+properties+and+machine+learning&rft.jtitle=Scientific+reports&rft.au=Poncheewin%2C+Wasin&rft.au=van+Diepeningen%2C+Anne+D.&rft.au=van+der+Lee%2C+Theo+A.+J.&rft.au=Suarez-Diez%2C+Maria&rft.date=2022-06-27&rft.pub=Nature+Publishing+Group+UK&rft.eissn=2045-2322&rft.volume=12&rft.issue=1&rft_id=info:doi/10.1038%2Fs41598-022-14913-4&rft.externalDocID=10_1038_s41598_022_14913_4
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2045-2322&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2045-2322&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2045-2322&client=summon