Common evolutionary features of the envelope glycoprotein of HIV-1 in patients belonging to a transmission chain

The diversity of the HIV-1 envelope glycoproteins (Env) is largely a consequence of the pressure exerted by the adaptive immune response to infection. While it was generally assumed that the neutralizing antibody (NAb) response depended mainly on the infected individual, the concept that virus-relat...

Full description

Saved in:
Bibliographic Details
Published inScientific reports Vol. 10; no. 1; p. 16744
Main Authors Beretta, Maxime, Migraine, Julie, Moreau, Alain, Essat, Asma, Goujard, Cécile, Chaix, Marie-Laure, Drouin, Aurélie, Bouvin-Pley, Mélanie, Meyer, Laurence, Barin, Francis, Braibant, Martine
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 07.10.2020
Subjects
Online AccessGet full text

Cover

Loading…
Abstract The diversity of the HIV-1 envelope glycoproteins (Env) is largely a consequence of the pressure exerted by the adaptive immune response to infection. While it was generally assumed that the neutralizing antibody (NAb) response depended mainly on the infected individual, the concept that virus-related factors could be important in inducing this response has recently emerged. Here, we analyzed the influence of the infecting viral strain in shaping NAb responses in four HIV-1 infected subjects belonging to a transmission chain. We also explored the impact of NAb responses on the functional evolution of the viral quasispecies. The four patients developed a strong autologous neutralizing antibody response that drove viral escape and coincided with a parallel evolution of their infecting quasispecies towards increasing infectious properties, increasing susceptibility to T20 and increasing resistance to both CD4 analogs and V3 loop-directed NAbs. This evolution was associated with identical Env sequence changes at several positions in the V3 loop, the fusion peptide and the HR2 domain of gp41. The common evolutionary pattern of Env in different hosts suggests that the capacity of a given Env to adapt to changing environments may be restricted by functional constraints that limit its evolutionary landscape.
AbstractList The diversity of the HIV-1 envelope glycoproteins (Env) is largely a consequence of the pressure exerted by the adaptive immune response to infection. While it was generally assumed that the neutralizing antibody (NAb) response depended mainly on the infected individual, the concept that virus-related factors could be important in inducing this response has recently emerged. Here, we analyzed the influence of the infecting viral strain in shaping NAb responses in four HIV-1 infected subjects belonging to a transmission chain. We also explored the impact of NAb responses on the functional evolution of the viral quasispecies. The four patients developed a strong autologous neutralizing antibody response that drove viral escape and coincided with a parallel evolution of their infecting quasispecies towards increasing infectious properties, increasing susceptibility to T20 and increasing resistance to both CD4 analogs and V3 loop-directed NAbs. This evolution was associated with identical Env sequence changes at several positions in the V3 loop, the fusion peptide and the HR2 domain of gp41. The common evolutionary pattern of Env in different hosts suggests that the capacity of a given Env to adapt to changing environments may be restricted by functional constraints that limit its evolutionary landscape.The diversity of the HIV-1 envelope glycoproteins (Env) is largely a consequence of the pressure exerted by the adaptive immune response to infection. While it was generally assumed that the neutralizing antibody (NAb) response depended mainly on the infected individual, the concept that virus-related factors could be important in inducing this response has recently emerged. Here, we analyzed the influence of the infecting viral strain in shaping NAb responses in four HIV-1 infected subjects belonging to a transmission chain. We also explored the impact of NAb responses on the functional evolution of the viral quasispecies. The four patients developed a strong autologous neutralizing antibody response that drove viral escape and coincided with a parallel evolution of their infecting quasispecies towards increasing infectious properties, increasing susceptibility to T20 and increasing resistance to both CD4 analogs and V3 loop-directed NAbs. This evolution was associated with identical Env sequence changes at several positions in the V3 loop, the fusion peptide and the HR2 domain of gp41. The common evolutionary pattern of Env in different hosts suggests that the capacity of a given Env to adapt to changing environments may be restricted by functional constraints that limit its evolutionary landscape.
The diversity of the HIV-1 envelope glycoproteins (Env) is largely a consequence of the pressure exerted by the adaptive immune response to infection. While it was generally assumed that the neutralizing antibody (NAb) response depended mainly on the infected individual, the concept that virus-related factors could be important in inducing this response has recently emerged. Here, we analyzed the influence of the infecting viral strain in shaping NAb responses in four HIV-1 infected subjects belonging to a transmission chain. We also explored the impact of NAb responses on the functional evolution of the viral quasispecies. The four patients developed a strong autologous neutralizing antibody response that drove viral escape and coincided with a parallel evolution of their infecting quasispecies towards increasing infectious properties, increasing susceptibility to T20 and increasing resistance to both CD4 analogs and V3 loop-directed NAbs. This evolution was associated with identical Env sequence changes at several positions in the V3 loop, the fusion peptide and the HR2 domain of gp41. The common evolutionary pattern of Env in different hosts suggests that the capacity of a given Env to adapt to changing environments may be restricted by functional constraints that limit its evolutionary landscape.
ArticleNumber 16744
Author Goujard, Cécile
Moreau, Alain
Chaix, Marie-Laure
Barin, Francis
Braibant, Martine
Meyer, Laurence
Migraine, Julie
Beretta, Maxime
Bouvin-Pley, Mélanie
Essat, Asma
Drouin, Aurélie
Author_xml – sequence: 1
  givenname: Maxime
  surname: Beretta
  fullname: Beretta, Maxime
  organization: Université de Tours et CHRU de Tours, Inserm U1259, Laboratory of Humoral Immunology, Department of Immunology, Institut Pasteur
– sequence: 2
  givenname: Julie
  surname: Migraine
  fullname: Migraine, Julie
  organization: Université de Tours et CHRU de Tours, Inserm U1259
– sequence: 3
  givenname: Alain
  surname: Moreau
  fullname: Moreau, Alain
  organization: Université de Tours et CHRU de Tours, Inserm U1259
– sequence: 4
  givenname: Asma
  surname: Essat
  fullname: Essat, Asma
  organization: Université Paris Sud, Université Paris Saclay, CESP Inserm U1018
– sequence: 5
  givenname: Cécile
  surname: Goujard
  fullname: Goujard, Cécile
  organization: Université Paris Sud, Université Paris Saclay, CESP Inserm U1018, AP-HP Hôpital de Bicêtre
– sequence: 6
  givenname: Marie-Laure
  surname: Chaix
  fullname: Chaix, Marie-Laure
  organization: Université de Paris, Inserm U944, Laboratoire de Virologie, AP-HP, Hôpital Saint Louis
– sequence: 7
  givenname: Aurélie
  surname: Drouin
  fullname: Drouin, Aurélie
  organization: Université de Tours et CHRU de Tours, Inserm U1259
– sequence: 8
  givenname: Mélanie
  surname: Bouvin-Pley
  fullname: Bouvin-Pley, Mélanie
  organization: Université de Tours et CHRU de Tours, Inserm U1259
– sequence: 9
  givenname: Laurence
  surname: Meyer
  fullname: Meyer, Laurence
  organization: Université Paris Sud, Université Paris Saclay, CESP Inserm U1018, AP-HP Hôpital de Bicêtre
– sequence: 10
  givenname: Francis
  surname: Barin
  fullname: Barin, Francis
  organization: Université de Tours et CHRU de Tours, Inserm U1259, CHRU de Tours, CNR VIH
– sequence: 11
  givenname: Martine
  surname: Braibant
  fullname: Braibant, Martine
  email: braibant@med.univ-tours.fr
  organization: Université de Tours et CHRU de Tours, Inserm U1259
BackLink https://www.ncbi.nlm.nih.gov/pubmed/33028961$$D View this record in MEDLINE/PubMed
BookMark eNp9Uctu1DAUtVARfdAfYIG8ZJPid5INEhoBrVSJDbC1PM51xlViB9sZqX9fD9OiwqLe2NI9D99zztFJiAEQekfJFSW8-5gFlX3XEEaalvetbMQrdMaIkA3jjJ08e5-iy5zvSD2S9YL2b9Ap54R1vaJnaNnEeY4Bwz5Oa_ExmHSPHZiyJsg4Olx2gCHsYYoL4HG6t3FJsYAPh-H1za-G4vpeTPEQSsbbCgyjDyMuERtckgl59jlXZWx3xoe36LUzU4bLx_sC_fz65cfmurn9_u1m8_m2sUKo0gyyNVYZ6cAa0g7EOObaQW2pNMo5SYGqwaiBwXZw3LZcqq7vbIW5jrdAOb9An466y7qdYbD1d8lMekl-rivqaLz-dxL8To9xr1tZk2WsCnx4FEjx9wq56LqHhWkyAeKaNROiZ4pWqwp9_9zrr8lTzBXQHQE2xZwTOG19MYe4q7WfNCX6UKo-lqprqfpPqVpUKvuP-qT-IokfSbmCwwhJ38U1hZr3S6wHIIq3rA
CitedBy_id crossref_primary_10_3389_fimmu_2024_1443377
crossref_primary_10_3389_fcimb_2022_862754
crossref_primary_10_1097_QAD_0000000000003371
Cites_doi 10.1128/JVI.76.17.8953-8957.2002
10.1128/JVI.01277-07
10.1186/s12977-018-0457-7
10.1038/s41467-019-08825-7
10.1038/s41586-018-0517-0
10.1016/j.coi.2018.04.025
10.1128/JVI.01213-09
10.1128/JVI.00198-11
10.1038/nature12746
10.1038/nature10696
10.1097/QAI.0b013e318162cac2
10.1038/nsmb.3291
10.1128/JVI.70.5.3098-3107.1996
10.1186/s12977-016-0299-0
10.1128/JVI.78.22.12625-12637.2004
10.1016/j.cell.2014.09.009
10.1128/JVI.00141-06
10.1126/science.1178746
10.1097/01.aids.0000247113.43714.5e
10.1128/JVI.00049-16
10.1007/978-1-59745-170-3_26
10.1371/journal.pone.0031695
10.1126/science.1093137
10.1128/JVI.00239-07
10.1128/JVI.76.17.8757-8768.2002
10.1128/JVI.02036-08
10.1371/journal.ppat.1000598
10.1371/journal.pcbi.0030058
10.1128/JVI.00201-06
10.1182/blood-2006-04-014829
10.1089/aid.2017.0044
10.1371/journal.pone.0044163
10.1128/JVI.79.10.6528-6531.2005
10.1128/JVI.01061-08
10.1093/nar/gkw343
10.1371/journal.ppat.1003477
10.1128/JVI.03577-12
10.1097/QAD.0000000000000106
10.1128/JVI.01149-09
10.1016/j.cell.2016.05.055
10.1128/JVI.66.11.6777-6780.1992
10.1073/pnas.0802203105
10.1086/596557
10.1186/s12977-018-0433-2
10.1016/j.immuni.2015.11.007
10.1038/s41590-018-0235-7
10.1086/605504
10.4049/jimmunol.0903745
10.1097/00002030-200403050-00005
10.1097/COH.0000000000000548
10.1016/j.celrep.2014.04.001
10.1128/JVI.79.10.6523-6527.2005
10.1128/JVI.03424-12
10.1097/COH.0b013e32832ea7e8
10.1038/nm.4187
10.1128/JVI.79.16.10108-10125.2005
10.2174/1570162X15666171124122044
10.1371/journal.ppat.1002721
10.1073/pnas.1217207109
10.1128/JVI.00227-10
10.1126/science.aae0474
10.1126/science.1213782
10.1186/s12977-016-0241-5
10.1073/pnas.0630530100
10.1186/1742-4690-9-36
10.1128/JVI.01839-06
10.1128/JVI.02622-09
10.1126/science.1207227
10.1016/j.str.2008.09.005
10.1089/aid.2006.0130
10.1128/JVI.02455-07
10.1128/JVI.02187-07
10.1128/JVI.00923-12
10.1371/journal.ppat.1003738
10.1038/nature10373
10.1073/pnas.1217537110
10.1128/JVI.02132-08
10.1006/viro.1995.1016
10.1038/nature01470
10.1128/JVI.00757-08
10.1038/nature11544
10.1371/journal.pone.0174852
10.1016/j.str.2013.04.015
10.1002/JLB.2RI0517-200R
10.1128/JVI.01171-18
10.1097/QAD.0000000000001906
ContentType Journal Article
Copyright The Author(s) 2020
Copyright_xml – notice: The Author(s) 2020
DBID C6C
AAYXX
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7X8
5PM
DOI 10.1038/s41598-020-73975-4
DatabaseName Springer Nature OA Free Journals
CrossRef
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
MEDLINE - Academic
DatabaseTitleList MEDLINE - Academic

CrossRef
MEDLINE

Database_xml – sequence: 1
  dbid: C6C
  name: Springer Nature OA Free Journals
  url: http://www.springeropen.com/
  sourceTypes: Publisher
– sequence: 2
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 3
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 2045-2322
ExternalDocumentID PMC7541522
33028961
10_1038_s41598_020_73975_4
Genre Research Support, Non-U.S. Gov't
Journal Article
Research Support, N.I.H., Extramural
GrantInformation_xml – fundername: Agence Nationale de Recherches sur le Sida et les Hépatites Virales
  funderid: http://dx.doi.org/10.13039/501100003323
– fundername: Sidaction
  funderid: http://dx.doi.org/10.13039/100009060
– fundername: ;
GroupedDBID 0R~
3V.
4.4
53G
5VS
7X7
88A
88E
88I
8FE
8FH
8FI
8FJ
AAFWJ
AAJSJ
AAKDD
ABDBF
ABUWG
ACGFS
ACSMW
ACUHS
ADBBV
ADRAZ
AENEX
AEUYN
AFKRA
AJTQC
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AOIJS
AZQEC
BAWUL
BBNVY
BCNDV
BENPR
BHPHI
BPHCQ
BVXVI
C6C
CCPQU
DIK
DWQXO
EBD
EBLON
EBS
ESX
FYUFA
GNUQQ
GROUPED_DOAJ
GX1
HCIFZ
HH5
HMCUK
HYE
KQ8
LK8
M0L
M1P
M2P
M48
M7P
M~E
NAO
OK1
PIMPY
PQQKQ
PROAC
PSQYO
RNT
RNTTT
RPM
SNYQT
UKHRP
AASML
AAYXX
AFPKN
CITATION
PHGZM
PHGZT
CGR
CUY
CVF
ECM
EIF
NPM
7X8
5PM
PJZUB
PPXIY
PQGLB
ID FETCH-LOGICAL-c446t-d57ac6a5feca07d0af2f7d6b15a6ff51e16da6d2ebdf3c7356898c0aff837e133
IEDL.DBID M48
ISSN 2045-2322
IngestDate Thu Aug 21 13:51:41 EDT 2025
Thu Jul 10 17:18:55 EDT 2025
Thu Jan 02 22:58:28 EST 2025
Tue Jul 01 02:46:32 EDT 2025
Thu Apr 24 23:03:58 EDT 2025
Fri Feb 21 02:38:58 EST 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 1
Language English
License Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c446t-d57ac6a5feca07d0af2f7d6b15a6ff51e16da6d2ebdf3c7356898c0aff837e133
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
OpenAccessLink http://journals.scholarsportal.info/openUrl.xqy?doi=10.1038/s41598-020-73975-4
PMID 33028961
PQID 2449261133
PQPubID 23479
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_7541522
proquest_miscellaneous_2449261133
pubmed_primary_33028961
crossref_citationtrail_10_1038_s41598_020_73975_4
crossref_primary_10_1038_s41598_020_73975_4
springer_journals_10_1038_s41598_020_73975_4
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2020-10-07
PublicationDateYYYYMMDD 2020-10-07
PublicationDate_xml – month: 10
  year: 2020
  text: 2020-10-07
  day: 07
PublicationDecade 2020
PublicationPlace London
PublicationPlace_xml – name: London
– name: England
PublicationTitle Scientific reports
PublicationTitleAbbrev Sci Rep
PublicationTitleAlternate Sci Rep
PublicationYear 2020
Publisher Nature Publishing Group UK
Publisher_xml – name: Nature Publishing Group UK
References Wibmer (CR22) 2013; 9
Kouyos (CR45) 2018; 561
McLellan (CR59) 2011; 480
Zhu (CR1) 1996; 70
Keele (CR4) 2008; 105
Braibant (CR24) 2006; 20
Braibant (CR29) 2008; 47
Chohan (CR46) 2005; 79
Walker (CR53) 2011; 477
Garces (CR61) 2014; 159
van Gils (CR31) 2010; 84
Sagar (CR3) 2004; 18
Sanchez-Merino (CR27) 2016; 90
CR77
Rousseau (CR42) 2008; 82
De Jong, De Ronde, Keulen, Tersmette, Goudsmit (CR65) 1992; 66
CR76
Richman, Wrin, Little, Petropoulos (CR15) 2003; 100
Goujard (CR79) 2009; 49
CR72
Scharf (CR56) 2014; 7
Frange (CR80) 2012; 7
McGuire (CR39) 2019; 14
Guinoiseau (CR88) 2017; 12
Yamamoto (CR86) 2006; 108
John (CR44) 2010; 184
Moore (CR34) 2013; 87
Reed, Muench (CR85) 1938; 27
Beretta (CR82) 2018; 32
Walker (CR52) 2009; 326
Gray (CR9) 2007; 81
Mouquet (CR60) 2012; 109
Sather (CR25) 2009; 83
Connor, Chen, Choes, Landau (CR81) 1995; 206
van Chooten, van Gils (CR38) 2018; 15
Grupping (CR67) 2012; 9
Moore, Gray, Morris (CR13) 2009; 4
Garces (CR74) 2015; 43
Scheid (CR51) 2011; 333
Huang (CR55) 2012; 491
Rong (CR20) 2007; 81
Sok, Burton (CR36) 2018; 19
Hraber (CR23) 2014; 28
Afgan (CR89) 2016; 44
Sagar (CR6) 2009; 199
Montefiori (CR84) 2009; 485
Andrabi, Bhiman, Burton (CR35) 2018; 53
Subbaraman, Schanz, Trkola (CR37) 2018; 15
Beaumont (CR83) 2009; 83
Abrahams (CR5) 2009; 83
Cardozo (CR66) 2007; 23
Gray (CR21) 2011; 85
Krumm (CR62) 2016; 13
Rusert (CR26) 2016; 22
Ananthaswamy (CR58) 2019; 10
Yoshimura (CR70) 2010; 84
Moore (CR14) 2009; 5
Moore (CR7) 2018; 16
Kong (CR57) 2016; 352
Gristick (CR75) 2016; 23
Sagar, Wu, Lee, Overbaugh (CR19) 2006; 80
Sander (CR64) 2007; 3
Wang (CR43) 2009; 83
Bunnick, Pisas, van Nuenen, Schuitemaker (CR10) 2008; 82
Moore (CR12) 2008; 82
Yusim (CR40) 2002; 76
Bouvin-Pley (CR48) 2013; 9
Bar (CR11) 2012; 8
Piantadosi (CR30) 2009; 83
Madani (CR69) 2008; 16
Bouvin-Pley (CR71) 2019; 93
Chaillon (CR32) 2012; 7
Dacheux (CR17) 2004; 78
Derdeyn (CR2) 2004; 303
Diskin (CR50) 2011; 334
Julien (CR73) 2013; 110
Cormier, Dragic (CR63) 2002; 76
Wu (CR33) 2012; 86
Oberle (CR78) 2016; 13
Shingai (CR54) 2013; 503
CR68
Li (CR49) 2005; 79
Liu (CR41) 2007; 81
Hongjaisee (CR87) 2017; 33
Frost (CR18) 2005; 79
Simonich (CR28) 2016; 166
Ping (CR47) 2013; 87
Wei (CR16) 2003; 422
Li (CR8) 2006; 80
73975_CR72
LJ Reed (73975_CR85) 1938; 27
SDW Frost (73975_CR18) 2005; 79
CA Simonich (73975_CR28) 2016; 166
M Bouvin-Pley (73975_CR48) 2013; 9
LH Ping (73975_CR47) 2013; 87
Y Liu (73975_CR41) 2007; 81
R Kong (73975_CR57) 2016; 352
H Subbaraman (73975_CR37) 2018; 15
RD Kouyos (73975_CR45) 2018; 561
P Rusert (73975_CR26) 2016; 22
DN Sather (73975_CR25) 2009; 83
T Guinoiseau (73975_CR88) 2017; 12
P Hraber (73975_CR23) 2014; 28
LM Walker (73975_CR53) 2011; 477
N Ananthaswamy (73975_CR58) 2019; 10
JP Julien (73975_CR73) 2013; 110
M Bouvin-Pley (73975_CR71) 2019; 93
M Braibant (73975_CR29) 2008; 47
73975_CR76
73975_CR77
M Li (73975_CR49) 2005; 79
F Garces (73975_CR74) 2015; 43
MR Abrahams (73975_CR5) 2009; 83
L Dacheux (73975_CR17) 2004; 78
C Goujard (73975_CR79) 2009; 49
M Sagar (73975_CR19) 2006; 80
DD Richman (73975_CR15) 2003; 100
CM Rousseau (73975_CR42) 2008; 82
ES Gray (73975_CR21) 2011; 85
J Huang (73975_CR55) 2012; 491
M Beretta (73975_CR82) 2018; 32
T Yamamoto (73975_CR86) 2006; 108
KJ Bar (73975_CR11) 2012; 8
JJ De Jong (73975_CR65) 1992; 66
DC Montefiori (73975_CR84) 2009; 485
H Mouquet (73975_CR60) 2012; 109
SA Krumm (73975_CR62) 2016; 13
JF Scheid (73975_CR51) 2011; 333
A Piantadosi (73975_CR30) 2009; 83
B Chohan (73975_CR46) 2005; 79
AT McGuire (73975_CR39) 2019; 14
M Braibant (73975_CR24) 2006; 20
CA Derdeyn (73975_CR2) 2004; 303
M Shingai (73975_CR54) 2013; 503
D Sok (73975_CR36) 2018; 19
HB Gristick (73975_CR75) 2016; 23
E Afgan (73975_CR89) 2016; 44
B Li (73975_CR8) 2006; 80
EM Bunnick (73975_CR10) 2008; 82
K Grupping (73975_CR67) 2012; 9
PL Moore (73975_CR14) 2009; 5
N Madani (73975_CR69) 2008; 16
K Yoshimura (73975_CR70) 2010; 84
PL Moore (73975_CR7) 2018; 16
T Zhu (73975_CR1) 1996; 70
F Garces (73975_CR61) 2014; 159
J van Chooten (73975_CR38) 2018; 15
F Wu (73975_CR33) 2012; 86
ES Gray (73975_CR9) 2007; 81
P Frange (73975_CR80) 2012; 7
M Sagar (73975_CR6) 2009; 199
BF Keele (73975_CR4) 2008; 105
K Yusim (73975_CR40) 2002; 76
M John (73975_CR44) 2010; 184
CK Wibmer (73975_CR22) 2013; 9
V Sanchez-Merino (73975_CR27) 2016; 90
A Chaillon (73975_CR32) 2012; 7
MJ van Gils (73975_CR31) 2010; 84
S Hongjaisee (73975_CR87) 2017; 33
LM Walker (73975_CR52) 2009; 326
O Sander (73975_CR64) 2007; 3
T Cardozo (73975_CR66) 2007; 23
RI Connor (73975_CR81) 1995; 206
L Scharf (73975_CR56) 2014; 7
M Sagar (73975_CR3) 2004; 18
JS McLellan (73975_CR59) 2011; 480
EG Cormier (73975_CR63) 2002; 76
PL Moore (73975_CR13) 2009; 4
E Beaumont (73975_CR83) 2009; 83
R Diskin (73975_CR50) 2011; 334
YE Wang (73975_CR43) 2009; 83
CS Oberle (73975_CR78) 2016; 13
PL Moore (73975_CR12) 2008; 82
R Andrabi (73975_CR35) 2018; 53
PL Moore (73975_CR34) 2013; 87
73975_CR68
R Rong (73975_CR20) 2007; 81
X Wei (73975_CR16) 2003; 422
References_xml – volume: 76
  start-page: 8953
  year: 2002
  end-page: 8957
  ident: CR63
  article-title: The crown and stem of the V3 loop play distinct roles in human immunodeficiency virus type 1 envelope glycoprotein interactions with the CCR5 coreceptor
  publication-title: J. Virol.
  doi: 10.1128/JVI.76.17.8953-8957.2002
– volume: 81
  start-page: 12179
  year: 2007
  end-page: 12188
  ident: CR41
  article-title: Evolution of human immunodeficiency virus type 1 cytotoxic T-lymphocyte epitopes: Fitness-balanced escape
  publication-title: J. Virol.
  doi: 10.1128/JVI.01277-07
– volume: 15
  start-page: 74
  year: 2018
  ident: CR38
  article-title: HIV-1 immunogens and strategies to drive antibody responses towards neutralization breadth
  publication-title: Retrovirology
  doi: 10.1186/s12977-018-0457-7
– volume: 10
  start-page: 873
  year: 2019
  ident: CR58
  article-title: A sequestered fusion peptide in the structure of an HIV-1 transmitted founder envelope trimer
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-08825-7
– volume: 561
  start-page: 406
  year: 2018
  end-page: 410
  ident: CR45
  article-title: Tracing HIV-1 strains that imprint broadly neutralizing antibody responses
  publication-title: Nature
  doi: 10.1038/s41586-018-0517-0
– volume: 53
  start-page: 143
  year: 2018
  end-page: 151
  ident: CR35
  article-title: Strategies for a multi-stage neutralizing antibody-based HIV vaccine
  publication-title: Curr. Opin. Immunol.
  doi: 10.1016/j.coi.2018.04.025
– volume: 83
  start-page: 9875
  year: 2009
  end-page: 9889
  ident: CR83
  article-title: Matrix and envelope coevolution revealed in a patient monitored since primary infection with human immunodeficiency virus type 1
  publication-title: J. Virol.
  doi: 10.1128/JVI.01213-09
– volume: 85
  start-page: 4828
  year: 2011
  end-page: 4840
  ident: CR21
  article-title: The neutralization breadth of HIV-1 develops incrementally over four years and is associated with CD4+ T cell decline and high viral load during acute infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.00198-11
– ident: CR68
– volume: 503
  start-page: 277
  year: 2013
  end-page: 280
  ident: CR54
  article-title: Antibody-mediated immunotherapy of macaques chronically infected with SHIV suppresses viraemia
  publication-title: Nature
  doi: 10.1038/nature12746
– volume: 480
  start-page: 336
  year: 2011
  end-page: 343
  ident: CR59
  article-title: Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
  publication-title: Nature
  doi: 10.1038/nature10696
– volume: 47
  start-page: 274
  year: 2008
  end-page: 284
  ident: CR29
  article-title: Characteristics of the env genes of HIV type 1 quasispecies in long-term nonprogressors with broadly neutralizing antibodies
  publication-title: J. Acquir. Immune Defic. Syndr.
  doi: 10.1097/QAI.0b013e318162cac2
– volume: 23
  start-page: 906
  year: 2016
  end-page: 915
  ident: CR75
  article-title: Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.3291
– volume: 70
  start-page: 3098
  year: 1996
  end-page: 3107
  ident: CR1
  article-title: Genetic characterization of human immunodeficiency virus type 1 in blood and genital secretions: Evidence for viral compartmentalization and selection during sexual transmission
  publication-title: J. Virol.
  doi: 10.1128/JVI.70.5.3098-3107.1996
– volume: 13
  start-page: 63
  year: 2016
  ident: CR78
  article-title: Tracing HIV-1 transmission: Envelope traits of HIV-1 transmitter and recipient pairs
  publication-title: Retrovirology
  doi: 10.1186/s12977-016-0299-0
– volume: 78
  start-page: 12625
  year: 2004
  end-page: 12637
  ident: CR17
  article-title: Evolutionary dynamics of the glycan shield of the human immunodeficiency virus envelope during natural infection and implications for exposure of the 2G12 epitope
  publication-title: J. Virol.
  doi: 10.1128/JVI.78.22.12625-12637.2004
– ident: CR77
– volume: 159
  start-page: 69
  year: 2014
  end-page: 79
  ident: CR61
  article-title: Structural evolution of glycan recognition by a family of potent HIV antibodies
  publication-title: Cell
  doi: 10.1016/j.cell.2014.09.009
– volume: 80
  start-page: 9586
  year: 2006
  end-page: 9598
  ident: CR19
  article-title: Human immunodeficiency virus type 1 V1–V2 envelope loop sequences expand and add glycosylation sites over the course of infection, and these modifications affect antibody neutralization sensitivity
  publication-title: J. Virol.
  doi: 10.1128/JVI.00141-06
– volume: 326
  start-page: 285
  year: 2009
  end-page: 289
  ident: CR52
  article-title: Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine target
  publication-title: Science
  doi: 10.1126/science.1178746
– volume: 20
  start-page: 1923
  year: 2006
  end-page: 1930
  ident: CR24
  article-title: Antibodies to conserved epitopes of the HIV-1 envelope in sera from long-term non-progressors: Prevalence and association with neutralizing activity
  publication-title: AIDS
  doi: 10.1097/01.aids.0000247113.43714.5e
– volume: 90
  start-page: 5231
  year: 2016
  end-page: 5245
  ident: CR27
  article-title: Detection of broadly neutralizing activity within the first months of HIV-1 infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.00049-16
– volume: 485
  start-page: 395
  year: 2009
  end-page: 405
  ident: CR84
  article-title: Measuring HIV neutralization in a luciferase reporter gene assay
  publication-title: Methods Mol. Biol.
  doi: 10.1007/978-1-59745-170-3_26
– volume: 7
  start-page: e31695
  year: 2012
  ident: CR80
  article-title: Recent HIV-1 infection contributes to the viral diffusion over the French territory with a recent increasing frequency
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0031695
– volume: 303
  start-page: 2016
  year: 2004
  end-page: 2019
  ident: CR2
  article-title: Envelope-constrained neutralization-sensitive HIV-1 after heterosexual transmission
  publication-title: Science
  doi: 10.1126/science.1093137
– volume: 81
  start-page: 6187
  year: 2007
  end-page: 6196
  ident: CR9
  article-title: Neutralizing antibody responses in acute human immunodeficiency virus type 1 subtype C infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.00239-07
– volume: 76
  start-page: 8757
  year: 2002
  end-page: 8768
  ident: CR40
  article-title: Clustering patterns of cytotoxic T-lymphocyte epitopes in human immunodeficiency virus type 1 (HIV-1) proteins reveal imprints of immune evasion on HIV-1 global variation
  publication-title: J. Virol.
  doi: 10.1128/JVI.76.17.8757-8768.2002
– volume: 83
  start-page: 757
  year: 2009
  end-page: 769
  ident: CR25
  article-title: Factors associated with the development of cross-reactive neutralizing antibodies during human immunodeficiency virus type 1 infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.02036-08
– volume: 93
  start-page: e01171
  year: 2019
  end-page: e1218
  ident: CR71
  article-title: Evolution of the envelope glycoprotein of HIV-1 clade B toward higher infectious properties over the course of the epidemic
  publication-title: J. Virol.
– volume: 5
  start-page: e1000598
  year: 2009
  ident: CR14
  article-title: Limited neutralizing antibody specificities drive neutralization escape in early HIV-1 subtype C infection
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1000598
– volume: 3
  start-page: e58
  year: 2007
  ident: CR64
  article-title: Structural descriptors of gp120 V3 loop for the prediction of HIV-1 coreceptor usage
  publication-title: PLoS Comput. Biol.
  doi: 10.1371/journal.pcbi.0030058
– volume: 80
  start-page: 5211
  year: 2006
  end-page: 5218
  ident: CR8
  article-title: Evidence for potent autologous neutralizing antibody titers and compact envelopes in early infection with subtype C human immunodeficiency virus type 1
  publication-title: J. Virol.
  doi: 10.1128/JVI.00201-06
– volume: 108
  start-page: 3305
  year: 2006
  end-page: 3312
  ident: CR86
  article-title: Lentivirus vectors expressing short hairpin RNAs against the U3-overlapping region of HIV nef inhibit HIV replication and infectivity in primary macrophages
  publication-title: Blood
  doi: 10.1182/blood-2006-04-014829
– volume: 33
  start-page: 946
  year: 2017
  end-page: 951
  ident: CR87
  article-title: Effect of amino acid substitutions within the V3 region of HIV-1 CRF01_AE on interaction with CCR5-coreceptor
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/aid.2017.0044
– volume: 7
  start-page: e44163
  year: 2012
  ident: CR32
  article-title: Human immunodeficiency virus type-1 (HIV-1) continues to evolve in presence of broadly neutralizing antibodies more than ten years after infection
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0044163
– volume: 79
  start-page: 6528
  year: 2005
  end-page: 6531
  ident: CR46
  article-title: Selection for human immunodeficiency virus type 1 envelope glycosylation variants with shorter V1–V2 loop sequences occurs during transmission of certain genetic subtypes and may impact viral RNA levels
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.10.6528-6531.2005
– volume: 83
  start-page: 1845
  year: 2009
  end-page: 1855
  ident: CR43
  article-title: Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1
  publication-title: J. Virol.
  doi: 10.1128/JVI.01061-08
– volume: 44
  start-page: W3
  year: 2016
  end-page: W10
  ident: CR89
  article-title: The galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw343
– volume: 9
  start-page: e1003477
  year: 2013
  ident: CR48
  article-title: Evidence for a continuous drift of the HIV-1 species towards higher resistance to neutralizing antibodies over the course of the epidemic
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003477
– volume: 87
  start-page: 7218
  year: 2013
  end-page: 7233
  ident: CR47
  article-title: Comparison of viral Env proteins from acute and chronic infections with subtype C human immunodeficiency virus type 1 identifies differences in glycosylation and CCR5 utilization and suggests a new strategy for immunogen design
  publication-title: J. Virol.
  doi: 10.1128/JVI.03577-12
– volume: 28
  start-page: 163
  year: 2014
  end-page: 169
  ident: CR23
  article-title: Prevalence of broadly neutralizing antibody responses during chronic HIV-1 infection
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000000106
– volume: 83
  start-page: 10269
  year: 2009
  end-page: 10274
  ident: CR30
  article-title: Breadth of neutralizing antibody response to human immunodeficiency virus type 1 is affected by factors early in infection but does not influence disease progression
  publication-title: J. Virol.
  doi: 10.1128/JVI.01149-09
– volume: 166
  start-page: 77
  year: 2016
  end-page: 87
  ident: CR28
  article-title: HIV-1 neutralizing antibodies with limited hypermutation from an infant
  publication-title: Cell
  doi: 10.1016/j.cell.2016.05.055
– volume: 66
  start-page: 6777
  year: 1992
  end-page: 6780
  ident: CR65
  article-title: Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution
  publication-title: J. Virol.
  doi: 10.1128/JVI.66.11.6777-6780.1992
– volume: 105
  start-page: 7552
  year: 2008
  end-page: 7557
  ident: CR4
  article-title: Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0802203105
– volume: 199
  start-page: 580
  year: 2009
  end-page: 589
  ident: CR6
  article-title: Selection of HIV variants with signature genotypic characteristics during heterosexual transmission
  publication-title: J. Infect. Dis.
  doi: 10.1086/596557
– volume: 15
  start-page: 52
  year: 2018
  ident: CR37
  article-title: Broadly neutralizing antibodies: What is needed to move from a rare event in HIV-1 infection to vaccine efficacy?
  publication-title: Retrovirology
  doi: 10.1186/s12977-018-0433-2
– volume: 43
  start-page: 1053
  year: 2015
  end-page: 1063
  ident: CR74
  article-title: Affinity maturation of a potent family of HIV antibodies is primarily focused on accommodating or avoiding glycans
  publication-title: Immunity
  doi: 10.1016/j.immuni.2015.11.007
– volume: 19
  start-page: 1179
  year: 2018
  end-page: 1188
  ident: CR36
  article-title: Recent progress in broadly neutralizing antibodies to HIV
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-018-0235-7
– volume: 49
  start-page: 982
  year: 2009
  end-page: 986
  ident: CR79
  article-title: Spontaneous control of viral replication during primary HIV infection: When is "HIV controller" status established?
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/605504
– ident: CR72
– volume: 184
  start-page: 4368
  year: 2010
  end-page: 4377
  ident: CR44
  article-title: Adaptive interactions between HLA and HIV-1: Highly divergent selection imposed by HLA class I molecules with common supertype motifs
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.0903745
– volume: 18
  start-page: 615
  year: 2004
  end-page: 619
  ident: CR3
  article-title: Identification of modifiable factors that affect the genetic diversity of the transmitted HIV-1 population
  publication-title: AIDS
  doi: 10.1097/00002030-200403050-00005
– volume: 14
  start-page: 294
  year: 2019
  end-page: 301
  ident: CR39
  article-title: Targeting broadly neutralizing antibody precursors: A naïve approach to vaccine design
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/COH.0000000000000548
– volume: 7
  start-page: 785
  year: 2014
  end-page: 795
  ident: CR56
  article-title: Antibody 8ANC195 reveals a site of broad vulnerability on the HIV-1 envelope spike
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2014.04.001
– volume: 79
  start-page: 6523
  year: 2005
  end-page: 6527
  ident: CR18
  article-title: Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.10.6523-6527.2005
– volume: 87
  start-page: 4882
  year: 2013
  end-page: 4894
  ident: CR34
  article-title: Multiple pathways of escape from HIV broadly cross-neutralizing V2-dependent antibodies
  publication-title: J. Virol.
  doi: 10.1128/JVI.03424-12
– volume: 4
  start-page: 358
  year: 2009
  end-page: 363
  ident: CR13
  article-title: Specificity of the autologous neutralizing antibody response
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/COH.0b013e32832ea7e8
– volume: 27
  start-page: 493
  year: 1938
  end-page: 497
  ident: CR85
  article-title: A simple method of estimating fifty per cent endpoints
  publication-title: Am. J. Hyg.
– volume: 22
  start-page: 1260
  year: 2016
  end-page: 1267
  ident: CR26
  article-title: Determinants of HIV-1 broadly neutralizing antibody induction
  publication-title: Nat. Med.
  doi: 10.1038/nm.4187
– volume: 79
  start-page: 10108
  year: 2005
  end-page: 10125
  ident: CR49
  article-title: Human immunodeficiency virus type 1 clones from acute and early subtype B infections for standardized assessments of vaccine-elicited neutralizing antibodies
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.16.10108-10125.2005
– volume: 16
  start-page: 21
  year: 2018
  end-page: 28
  ident: CR7
  article-title: The neutralizing antibody response to the HIV-1 Env protein
  publication-title: Curr. HIV Res.
  doi: 10.2174/1570162X15666171124122044
– volume: 8
  start-page: e1002721
  year: 2012
  ident: CR11
  article-title: Early low-titer neutralizing antibodies impede HIV-1 replication and select for virus escape
  publication-title: PloS Pathog.
  doi: 10.1371/journal.ppat.1002721
– volume: 109
  start-page: E3268
  year: 2012
  end-page: E3277
  ident: CR60
  article-title: Complex-type N-glycan recognition by potent broadly neutralizing HIV antibodies
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1217207109
– volume: 84
  start-page: 7558
  year: 2010
  end-page: 7568
  ident: CR70
  article-title: Enhanced exposure of human immunodeficiency virus type 1 primary isolate neutralization epitopes through binding of CD4 mimetic compounds
  publication-title: J. Virol.
  doi: 10.1128/JVI.00227-10
– volume: 352
  start-page: 828
  year: 2016
  end-page: 833
  ident: CR57
  article-title: Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibodies
  publication-title: Science
  doi: 10.1126/science.aae0474
– volume: 334
  start-page: 1289
  year: 2011
  end-page: 1293
  ident: CR50
  article-title: Increasing the potency and breath of an HIV antibody by using structure-based rational design
  publication-title: Science
  doi: 10.1126/science.1213782
– volume: 13
  start-page: 8
  year: 2016
  ident: CR62
  article-title: Mechanisms of escape from the PGT128 family of anti-HIV broadly neutralizing antibodies
  publication-title: Retrovirology
  doi: 10.1186/s12977-016-0241-5
– volume: 100
  start-page: 4144
  year: 2003
  end-page: 4149
  ident: CR15
  article-title: Rapid evolution of the neutralizing antibody response to HIV type 1 infection
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0630530100
– volume: 9
  start-page: 36
  year: 2012
  ident: CR67
  article-title: MiniCD4 protein resistance mutations affect binding to the HIV-1 gp120 CD4 binding site and decrease entry efficiency
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-9-36
– volume: 81
  start-page: 1350
  year: 2007
  end-page: 1359
  ident: CR20
  article-title: Role of V1V2 and other human immunodeficiency virus type 1 envelope domains in resistance to autologous neutralization during clade C infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.01839-06
– volume: 84
  start-page: 3576
  year: 2010
  end-page: 3585
  ident: CR31
  article-title: Rapid escape from preserved cross-reactive neutralizing humoral immunity without loss of viral fitness in HIV-1-infected progressors and long-term nonprogressors
  publication-title: J. Virol.
  doi: 10.1128/JVI.02622-09
– volume: 333
  start-page: 1633
  year: 2011
  end-page: 1637
  ident: CR51
  article-title: Sequence and structural convergence of broad and potent HIV antibodies that mimic CD4 binding
  publication-title: Science
  doi: 10.1126/science.1207227
– volume: 16
  start-page: 1689
  year: 2008
  end-page: 1701
  ident: CR69
  article-title: Small-molecule CD4 mimics interact with a highly conserved pocket on HIV-1 gp120
  publication-title: Structure
  doi: 10.1016/j.str.2008.09.005
– volume: 23
  start-page: 415
  year: 2007
  end-page: 426
  ident: CR66
  article-title: Structural basis for coreceptor selectivity by the HIV type 1 V3 loop
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/aid.2006.0130
– volume: 82
  start-page: 6434
  year: 2008
  end-page: 6446
  ident: CR42
  article-title: HLA class I-driven evolution of human immunodeficiency virus type 1 subtype C proteome: Immune escape and viral load
  publication-title: J. Virol.
  doi: 10.1128/JVI.02455-07
– volume: 82
  start-page: 1860
  year: 2008
  end-page: 1869
  ident: CR12
  article-title: The C3–V4 region is a major target of autologous neutralizing antibodies in human immunodeficiency virus type 1 subtype C infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.02187-07
– volume: 86
  start-page: 8835
  year: 2012
  end-page: 8847
  ident: CR33
  article-title: Sequential evolution and escape from neutralization of Simian immunodeficiency virus SIVsmE660 clones in rhesus macaques
  publication-title: J. Virol.
  doi: 10.1128/JVI.00923-12
– volume: 9
  start-page: e1003738
  year: 2013
  ident: CR22
  article-title: Viral escape from HIV-1 neutralizing antibodies drives increased plasma neutralization breadth through sequential recognition of multiple epitopes and immunotypes
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003738
– volume: 477
  start-page: 466
  year: 2011
  end-page: 470
  ident: CR53
  article-title: Broad neutralization coverage of HIV by multiple highly potent antibodies
  publication-title: Nature
  doi: 10.1038/nature10373
– volume: 110
  start-page: 4351
  year: 2013
  end-page: 4356
  ident: CR73
  article-title: Asymmetric recognition of the HIV-1 trimer by broadly neutralizing antibody PG9
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1217537110
– volume: 83
  start-page: 3556
  year: 2009
  end-page: 3567
  ident: CR5
  article-title: Quantitating the multiplicity of infection with human immunodeficiency virus type 1 subtype C reveals a non-poisson distribution of transmitted variants
  publication-title: J. Virol.
  doi: 10.1128/JVI.02132-08
– volume: 206
  start-page: 935
  year: 1995
  end-page: 944
  ident: CR81
  article-title: Vpr is required for efficient replication of human immunodeficiency virus type-1 in mononuclear phagocytes
  publication-title: Virology
  doi: 10.1006/viro.1995.1016
– ident: CR76
– volume: 32
  start-page: 1917
  year: 2018
  end-page: 1926
  ident: CR82
  article-title: Phenotypic properties of envelope glycoproteins of transmitted HIV-1 variants from patients belonging to transmission chains
  publication-title: AIDS
– volume: 422
  start-page: 307
  year: 2003
  end-page: 312
  ident: CR16
  article-title: Antibody neutralization and escape by HIV-1
  publication-title: Nature
  doi: 10.1038/nature01470
– volume: 82
  start-page: 7932
  year: 2008
  end-page: 7941
  ident: CR10
  article-title: Autologous neutralizing humoral immunity and evolution of the viral envelope in the course of subtype B human immunodeficiency virus type 1 infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.00757-08
– volume: 491
  start-page: 406
  year: 2012
  end-page: 412
  ident: CR55
  article-title: Broad and potent neutralization of HIV-1 by a gp41-specific human antibody
  publication-title: Nature
  doi: 10.1038/nature11544
– volume: 12
  start-page: e0174852
  year: 2017
  ident: CR88
  article-title: Deep sequencing is an appropriate tool for the selection of unique hepatitis C virus (HCV) variants after single genomic amplification
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0174852
– volume: 3
  start-page: e58
  year: 2007
  ident: 73975_CR64
  publication-title: PLoS Comput. Biol.
  doi: 10.1371/journal.pcbi.0030058
– volume: 87
  start-page: 7218
  year: 2013
  ident: 73975_CR47
  publication-title: J. Virol.
  doi: 10.1128/JVI.03577-12
– volume: 80
  start-page: 9586
  year: 2006
  ident: 73975_CR19
  publication-title: J. Virol.
  doi: 10.1128/JVI.00141-06
– volume: 81
  start-page: 1350
  year: 2007
  ident: 73975_CR20
  publication-title: J. Virol.
  doi: 10.1128/JVI.01839-06
– volume: 491
  start-page: 406
  year: 2012
  ident: 73975_CR55
  publication-title: Nature
  doi: 10.1038/nature11544
– volume: 105
  start-page: 7552
  year: 2008
  ident: 73975_CR4
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0802203105
– volume: 19
  start-page: 1179
  year: 2018
  ident: 73975_CR36
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-018-0235-7
– volume: 9
  start-page: e1003738
  year: 2013
  ident: 73975_CR22
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003738
– volume: 83
  start-page: 9875
  year: 2009
  ident: 73975_CR83
  publication-title: J. Virol.
  doi: 10.1128/JVI.01213-09
– volume: 49
  start-page: 982
  year: 2009
  ident: 73975_CR79
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/605504
– volume: 303
  start-page: 2016
  year: 2004
  ident: 73975_CR2
  publication-title: Science
  doi: 10.1126/science.1093137
– volume: 7
  start-page: e44163
  year: 2012
  ident: 73975_CR32
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0044163
– volume: 334
  start-page: 1289
  year: 2011
  ident: 73975_CR50
  publication-title: Science
  doi: 10.1126/science.1213782
– ident: 73975_CR68
  doi: 10.1016/j.str.2013.04.015
– volume: 166
  start-page: 77
  year: 2016
  ident: 73975_CR28
  publication-title: Cell
  doi: 10.1016/j.cell.2016.05.055
– volume: 9
  start-page: e1003477
  year: 2013
  ident: 73975_CR48
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003477
– volume: 28
  start-page: 163
  year: 2014
  ident: 73975_CR23
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000000106
– volume: 82
  start-page: 7932
  year: 2008
  ident: 73975_CR10
  publication-title: J. Virol.
  doi: 10.1128/JVI.00757-08
– volume: 83
  start-page: 10269
  year: 2009
  ident: 73975_CR30
  publication-title: J. Virol.
  doi: 10.1128/JVI.01149-09
– volume: 53
  start-page: 143
  year: 2018
  ident: 73975_CR35
  publication-title: Curr. Opin. Immunol.
  doi: 10.1016/j.coi.2018.04.025
– ident: 73975_CR77
– volume: 485
  start-page: 395
  year: 2009
  ident: 73975_CR84
  publication-title: Methods Mol. Biol.
  doi: 10.1007/978-1-59745-170-3_26
– volume: 27
  start-page: 493
  year: 1938
  ident: 73975_CR85
  publication-title: Am. J. Hyg.
– volume: 477
  start-page: 466
  year: 2011
  ident: 73975_CR53
  publication-title: Nature
  doi: 10.1038/nature10373
– volume: 23
  start-page: 906
  year: 2016
  ident: 73975_CR75
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.3291
– volume: 110
  start-page: 4351
  year: 2013
  ident: 73975_CR73
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1217537110
– volume: 10
  start-page: 873
  year: 2019
  ident: 73975_CR58
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-08825-7
– volume: 561
  start-page: 406
  year: 2018
  ident: 73975_CR45
  publication-title: Nature
  doi: 10.1038/s41586-018-0517-0
– volume: 76
  start-page: 8953
  year: 2002
  ident: 73975_CR63
  publication-title: J. Virol.
  doi: 10.1128/JVI.76.17.8953-8957.2002
– volume: 76
  start-page: 8757
  year: 2002
  ident: 73975_CR40
  publication-title: J. Virol.
  doi: 10.1128/JVI.76.17.8757-8768.2002
– ident: 73975_CR72
  doi: 10.1002/JLB.2RI0517-200R
– volume: 16
  start-page: 1689
  year: 2008
  ident: 73975_CR69
  publication-title: Structure
  doi: 10.1016/j.str.2008.09.005
– volume: 199
  start-page: 580
  year: 2009
  ident: 73975_CR6
  publication-title: J. Infect. Dis.
  doi: 10.1086/596557
– volume: 87
  start-page: 4882
  year: 2013
  ident: 73975_CR34
  publication-title: J. Virol.
  doi: 10.1128/JVI.03424-12
– volume: 109
  start-page: E3268
  year: 2012
  ident: 73975_CR60
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1217207109
– volume: 7
  start-page: e31695
  year: 2012
  ident: 73975_CR80
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0031695
– volume: 20
  start-page: 1923
  year: 2006
  ident: 73975_CR24
  publication-title: AIDS
  doi: 10.1097/01.aids.0000247113.43714.5e
– volume: 81
  start-page: 12179
  year: 2007
  ident: 73975_CR41
  publication-title: J. Virol.
  doi: 10.1128/JVI.01277-07
– volume: 83
  start-page: 1845
  year: 2009
  ident: 73975_CR43
  publication-title: J. Virol.
  doi: 10.1128/JVI.01061-08
– volume: 66
  start-page: 6777
  year: 1992
  ident: 73975_CR65
  publication-title: J. Virol.
  doi: 10.1128/JVI.66.11.6777-6780.1992
– volume: 15
  start-page: 52
  year: 2018
  ident: 73975_CR37
  publication-title: Retrovirology
  doi: 10.1186/s12977-018-0433-2
– volume: 503
  start-page: 277
  year: 2013
  ident: 73975_CR54
  publication-title: Nature
  doi: 10.1038/nature12746
– volume: 90
  start-page: 5231
  year: 2016
  ident: 73975_CR27
  publication-title: J. Virol.
  doi: 10.1128/JVI.00049-16
– volume: 43
  start-page: 1053
  year: 2015
  ident: 73975_CR74
  publication-title: Immunity
  doi: 10.1016/j.immuni.2015.11.007
– volume: 100
  start-page: 4144
  year: 2003
  ident: 73975_CR15
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0630530100
– volume: 184
  start-page: 4368
  year: 2010
  ident: 73975_CR44
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.0903745
– volume: 79
  start-page: 6528
  year: 2005
  ident: 73975_CR46
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.10.6528-6531.2005
– volume: 18
  start-page: 615
  year: 2004
  ident: 73975_CR3
  publication-title: AIDS
  doi: 10.1097/00002030-200403050-00005
– volume: 85
  start-page: 4828
  year: 2011
  ident: 73975_CR21
  publication-title: J. Virol.
  doi: 10.1128/JVI.00198-11
– volume: 93
  start-page: e01171
  year: 2019
  ident: 73975_CR71
  publication-title: J. Virol.
  doi: 10.1128/JVI.01171-18
– volume: 83
  start-page: 757
  year: 2009
  ident: 73975_CR25
  publication-title: J. Virol.
  doi: 10.1128/JVI.02036-08
– volume: 80
  start-page: 5211
  year: 2006
  ident: 73975_CR8
  publication-title: J. Virol.
  doi: 10.1128/JVI.00201-06
– volume: 5
  start-page: e1000598
  year: 2009
  ident: 73975_CR14
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1000598
– volume: 23
  start-page: 415
  year: 2007
  ident: 73975_CR66
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/aid.2006.0130
– volume: 206
  start-page: 935
  year: 1995
  ident: 73975_CR81
  publication-title: Virology
  doi: 10.1006/viro.1995.1016
– volume: 12
  start-page: e0174852
  year: 2017
  ident: 73975_CR88
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0174852
– volume: 4
  start-page: 358
  year: 2009
  ident: 73975_CR13
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/COH.0b013e32832ea7e8
– volume: 47
  start-page: 274
  year: 2008
  ident: 73975_CR29
  publication-title: J. Acquir. Immune Defic. Syndr.
  doi: 10.1097/QAI.0b013e318162cac2
– volume: 7
  start-page: 785
  year: 2014
  ident: 73975_CR56
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2014.04.001
– volume: 9
  start-page: 36
  year: 2012
  ident: 73975_CR67
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-9-36
– volume: 86
  start-page: 8835
  year: 2012
  ident: 73975_CR33
  publication-title: J. Virol.
  doi: 10.1128/JVI.00923-12
– volume: 15
  start-page: 74
  year: 2018
  ident: 73975_CR38
  publication-title: Retrovirology
  doi: 10.1186/s12977-018-0457-7
– volume: 84
  start-page: 3576
  year: 2010
  ident: 73975_CR31
  publication-title: J. Virol.
  doi: 10.1128/JVI.02622-09
– volume: 16
  start-page: 21
  year: 2018
  ident: 73975_CR7
  publication-title: Curr. HIV Res.
  doi: 10.2174/1570162X15666171124122044
– volume: 82
  start-page: 6434
  year: 2008
  ident: 73975_CR42
  publication-title: J. Virol.
  doi: 10.1128/JVI.02455-07
– volume: 83
  start-page: 3556
  year: 2009
  ident: 73975_CR5
  publication-title: J. Virol.
  doi: 10.1128/JVI.02132-08
– volume: 422
  start-page: 307
  year: 2003
  ident: 73975_CR16
  publication-title: Nature
  doi: 10.1038/nature01470
– volume: 14
  start-page: 294
  year: 2019
  ident: 73975_CR39
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/COH.0000000000000548
– volume: 82
  start-page: 1860
  year: 2008
  ident: 73975_CR12
  publication-title: J. Virol.
  doi: 10.1128/JVI.02187-07
– volume: 44
  start-page: W3
  year: 2016
  ident: 73975_CR89
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw343
– volume: 333
  start-page: 1633
  year: 2011
  ident: 73975_CR51
  publication-title: Science
  doi: 10.1126/science.1207227
– volume: 108
  start-page: 3305
  year: 2006
  ident: 73975_CR86
  publication-title: Blood
  doi: 10.1182/blood-2006-04-014829
– volume: 79
  start-page: 10108
  year: 2005
  ident: 73975_CR49
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.16.10108-10125.2005
– volume: 79
  start-page: 6523
  year: 2005
  ident: 73975_CR18
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.10.6523-6527.2005
– volume: 352
  start-page: 828
  year: 2016
  ident: 73975_CR57
  publication-title: Science
  doi: 10.1126/science.aae0474
– volume: 13
  start-page: 63
  year: 2016
  ident: 73975_CR78
  publication-title: Retrovirology
  doi: 10.1186/s12977-016-0299-0
– volume: 84
  start-page: 7558
  year: 2010
  ident: 73975_CR70
  publication-title: J. Virol.
  doi: 10.1128/JVI.00227-10
– volume: 32
  start-page: 1917
  year: 2018
  ident: 73975_CR82
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000001906
– volume: 13
  start-page: 8
  year: 2016
  ident: 73975_CR62
  publication-title: Retrovirology
  doi: 10.1186/s12977-016-0241-5
– volume: 159
  start-page: 69
  year: 2014
  ident: 73975_CR61
  publication-title: Cell
  doi: 10.1016/j.cell.2014.09.009
– volume: 70
  start-page: 3098
  year: 1996
  ident: 73975_CR1
  publication-title: J. Virol.
  doi: 10.1128/JVI.70.5.3098-3107.1996
– volume: 81
  start-page: 6187
  year: 2007
  ident: 73975_CR9
  publication-title: J. Virol.
  doi: 10.1128/JVI.00239-07
– volume: 33
  start-page: 946
  year: 2017
  ident: 73975_CR87
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/aid.2017.0044
– volume: 480
  start-page: 336
  year: 2011
  ident: 73975_CR59
  publication-title: Nature
  doi: 10.1038/nature10696
– volume: 78
  start-page: 12625
  year: 2004
  ident: 73975_CR17
  publication-title: J. Virol.
  doi: 10.1128/JVI.78.22.12625-12637.2004
– volume: 326
  start-page: 285
  year: 2009
  ident: 73975_CR52
  publication-title: Science
  doi: 10.1126/science.1178746
– volume: 8
  start-page: e1002721
  year: 2012
  ident: 73975_CR11
  publication-title: PloS Pathog.
  doi: 10.1371/journal.ppat.1002721
– volume: 22
  start-page: 1260
  year: 2016
  ident: 73975_CR26
  publication-title: Nat. Med.
  doi: 10.1038/nm.4187
– ident: 73975_CR76
SSID ssj0000529419
Score 2.327944
Snippet The diversity of the HIV-1 envelope glycoproteins (Env) is largely a consequence of the pressure exerted by the adaptive immune response to infection. While it...
SourceID pubmedcentral
proquest
pubmed
crossref
springer
SourceType Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 16744
SubjectTerms 631/326
631/326/596
631/326/596/1787
631/326/596/2553
631/326/596/2554
631/326/596/2558
Evolution, Molecular
HIV Infections - virology
HIV-1 - metabolism
Humanities and Social Sciences
Humans
Male
Monocytes - metabolism
Monocytes - virology
multidisciplinary
Science
Science (multidisciplinary)
Viral Envelope Proteins - metabolism
SummonAdditionalLinks – databaseName: Springer Nature OA Free Journals
  dbid: C6C
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV3daxQxEA-1IvgifntaJYJvGrzdfO6jHJZT0CcrfVvy2R6UbOluhfvvncnuHlwrBd8WMlmSzOzOL5mZXwj5oMLSeUC-zBjhmNBRssa5hnlw1U5yX2mDtcM_fqr1ifh-Kk8PSD3XwpSk_UJpWX7Tc3bY5x4cDRaDwWZHgwuVTNwj95G6Ha16pVa7cxWMXImqmepjltz8o-u-D7oFLG_nR94Ikhbfc_yYPJpAI_0yDvMJOYj5KXkwXiO5fUYuscqjyzT-mezIXm1pimV-Pe0SBZBHYy7ZQZGeXWx9V-gZNhkb199-s4rC80Sx2lMHgkhTeEaHjlo6oDsDc8BzNerP7SY_JyfHX3-t1my6SYF5WKGBBamtV1am6O1Sh6VNddJBuUpalZKsYqWCVaGOLiTuNZfKNMaDWIL9a4Rt7AtymLscXxEaTbBCOh2S4MJz2TjEGI2RJnGjrFiQal7b1k8043jbxUVbwt3ctKM-WtBHW_TRQp-Puz6XI8nGndLvZ5W1MHkMcNgcu-u-BajSwI4QxrsgL0cV7t7HOcZUVbUgek-5OwHk2d5vyZvzwretJaKcekE-zWbQTh96f8cwX_-f-BvysEYTxdwEfUQOh6vr-BbwzuDeFQP_C3Z4_Dg
  priority: 102
  providerName: Springer Nature
Title Common evolutionary features of the envelope glycoprotein of HIV-1 in patients belonging to a transmission chain
URI https://link.springer.com/article/10.1038/s41598-020-73975-4
https://www.ncbi.nlm.nih.gov/pubmed/33028961
https://www.proquest.com/docview/2449261133
https://pubmed.ncbi.nlm.nih.gov/PMC7541522
Volume 10
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1Li9swEB72QaGX0vemj6BCb63a2LIePpQSQpc0sL20KXszkiztBoK9jb2l-fcdyXYg3WWhN4MeyJoR841G8w3AW1FOjEXkS5XKDM2k4zQ3JqcWTbXhzCZShdzhs29ivswW5_z8AIZyR_0GNre6dqGe1HKz_vDn1_YzHvhPXcq4-tigEQqJYugISTSvnGaHcIyWSYaDetbD_Y7rO82zWOsjkLBTBBNpn0dz-zT7tuoGAL35jvKfYGq0UacP4UEPLsm004ZHcOCqx3CvKze5fQJXIRukroj73eub3myJd5HasyG1JwgGiaviKyJHLtZbW0cah1UVGudff9KE4HdPxdoQgx0DneEFaWuiSRvMHqpNuH8j9lKvqqewPP3yYzanfcUFatEtbGnJpbZCc--snshyon3qZSlMwrXwnicuEaUWZepM6ZmVjAuVK4vdPPq5Dt3dZ3BU1ZU7AeJUqTNuZOkzllnGcxOwSK648kwJnY0gGfa2sD0deaiKsS5iWJypopNHgfIoojwKHPNuN-aqI-O4s_ebQWQF_nwIhOjK1ddNgZAmR88R1zuC550Id_MxFmKvIhmB3BPurkPg495vqVaXkZdb8oCG0hG8H9SgGPT5jmW--K-fegn306Ch4QmDfAVH7ebavUZY1JoxHE-ni--LMRzOxGwcLxfGUf__Ao4_CqU
linkProvider Scholars Portal
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1La9wwEBZpSmkvpc90-1Sht1Z0bT19LEvDpk1ySkpuQs9kIcghdgr77zuS7YVtSqA3g0ZG8ow933hmPiH0Sfi5dYB8iVLMEiYDJ421DXHgqi2nrpIq9w4fHYvlKftxxs92UD31wpSi_UJpWT7TU3XY1w4cTW4Gg2BHggvlhN1D9wFri1zGtRCLzX-VnLliVTP2x8yp-sfUbR90C1jero_8K0lafM_-E_R4BI3427DMp2gnpGfowXCM5Po5uspdHm3C4fdoR-Z6jWMo--twGzGAPBxSqQ4K-Pxy7dpCz7BKeXB58ItUGK5HitUOWxDMNIXnuG-xwX12Z2AO-b8adhdmlV6g0_3vJ4slGU9SIA7CvZ54Lo0ThsfgzFz6uYl1lF7YihsRI69CJbwRvg7WR-okhcfaKAdiEeLXAGHsS7Sb2hReIRyUN4xb6SOjzFHe2IwxGsVVpEoYNkPV9Gy1G2nG82kXl7qku6nSgz406EMXfWiY83kz52og2bhT-uOkMg2bzwkOk0J702mAKg1EhLDeGdobVLi5H6U5pyqqGZJbyt0IZJ7t7ZG0uih825JnlFPP0JfJDPT4ond3LPP1_4l_QA-XJ0eH-vDg-Ocb9KjO5prrFORbtNtf34R3gH16-74Y-x97Fv8n
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1Lb9QwELZKEYgLKu8FCkbiBqHJ-pkj2rLa8qg4UNSb5We7UuWsmhRp_z1jJ1lpW1SJWySPIyczyXzjmfmM0HvuSmMB-RZSUlNQ4VlRG1MXFly1YcRWQqbe4R_HfHFCv56y0x3Ex16YXLSfKS3zb3qsDjtowdGkZjAIdgS4UFbQTysX7qC7gLfLFHTN-Gyzt5KyV7Sqhx6Zksh_TN_2QzfA5c0ayWuJ0ux_5nvo4QAc8ed-qY_Qjo-P0b3-KMn1E7RKnR5NxP7PYEv6co2Dz8_Y4iZgAHrYx1wh5PHZxdo2maJhGdPg4uh3UWG4HmhWW2xAMFEVnuGuwRp3yaWBSaS9NWzP9TI-RSfzL79mi2I4TaGwEPJ1hWNCW65Z8FaXwpU6TINw3FRM8xBY5SvuNHdTb1wgVhDGZS0tiAWIYT2Ess_Qbmyif4Gwl05TZoQLlFBLWG0Szqglk4FIrukEVeO7VXagGk8nXlyonPImUvX6UKAPlfWhYM6HzZxVT7Rxq_S7UWUKHj4lOXT0zVWrAK7UEBXCeifoea_Czf0ISXlVXk2Q2FLuRiBxbW-PxOV55twWLCGd6QR9HM1ADR97e8syX_6f-Ft0_-fhXH0_Ov72Cj2YJmtNpQriNdrtLq_8PsCfzrzJtv4XEvsAPw
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Common+evolutionary+features+of+the+envelope+glycoprotein+of+HIV-1+in+patients+belonging+to+a+transmission+chain&rft.jtitle=Scientific+reports&rft.au=Beretta%2C+Maxime&rft.au=Migraine%2C+Julie&rft.au=Moreau%2C+Alain&rft.au=Essat%2C+Asma&rft.date=2020-10-07&rft.issn=2045-2322&rft.eissn=2045-2322&rft.volume=10&rft.issue=1&rft_id=info:doi/10.1038%2Fs41598-020-73975-4&rft.externalDBID=n%2Fa&rft.externalDocID=10_1038_s41598_020_73975_4
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2045-2322&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2045-2322&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2045-2322&client=summon