Molecular Characterization of Herpes Simplex Virus 2 Strains by Analysis of Microsatellite Polymorphism
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| Published in | Journal of Clinical Microbiology Vol. 51; no. 11; pp. 3616 - 3623 |
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01.11.2013
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| AbstractList | The complete 154-kbp linear double-stranded genomic DNA sequence of herpes simplex virus 2 (HSV-2), consisting of two extended regions of unique sequences bounded by a pair of inverted repeat elements, was published in 1998 and since then has been widely employed in a wide range of studies. Throughout the HSV-2 genome are scattered 150 microsatellites (also referred to as short tandem repeats) of 1- to 6-nucleotide motifs, mainly distributed in noncoding regions. Microsatellites are considered reliable markers for genetic mapping to differentiate herpesvirus strains, as shown for cytomegalovirus and HSV-1. The aim of this work was to characterize 12 polymorphic microsatellites within the HSV-2 genome by use of 3 multiplex PCR assays in combination with length polymorphism analysis for the rapid genetic differentiation of 56 HSV-2 clinical isolates and 2 HSV-2 laboratory strains (gHSV-2 and MS). This new system was applied to a specific new HSV-2 variant recently identified in HIV-1-infected patients originating from West Africa. Our results confirm that microsatellite polymorphism analysis is an accurate tool for studying the epidemiology of HSV-2 infections. The complete 154-kbp linear double-stranded genomic DNA sequence of herpes simplex virus 2 (HSV-2), consisting of two extended regions of unique sequences bounded by a pair of inverted repeat elements, was published in 1998 and since then has been widely employed in a wide range of studies. Throughout the HSV-2 genome are scattered 150 microsatellites (also referred to as short tandem repeats) of 1- to 6-nucleotide motifs, mainly distributed in noncoding regions. Microsatellites are considered reliable markers for genetic mapping to differentiate herpesvirus strains, as shown for cytomegalovirus and HSV-1. The aim of this work was to characterize 12 polymorphic microsatellites within the HSV-2 genome by use of 3 multiplex PCR assays in combination with length polymorphism analysis for the rapid genetic differentiation of 56 HSV-2 clinical isolates and 2 HSV-2 laboratory strains (gHSV-2 and MS). This new system was applied to a specific new HSV-2 variant recently identified in HIV-1-infected patients originating from West Africa. Our results confirm that microsatellite polymorphism analysis is an accurate tool for studying the epidemiology of HSV-2 infections.The complete 154-kbp linear double-stranded genomic DNA sequence of herpes simplex virus 2 (HSV-2), consisting of two extended regions of unique sequences bounded by a pair of inverted repeat elements, was published in 1998 and since then has been widely employed in a wide range of studies. Throughout the HSV-2 genome are scattered 150 microsatellites (also referred to as short tandem repeats) of 1- to 6-nucleotide motifs, mainly distributed in noncoding regions. Microsatellites are considered reliable markers for genetic mapping to differentiate herpesvirus strains, as shown for cytomegalovirus and HSV-1. The aim of this work was to characterize 12 polymorphic microsatellites within the HSV-2 genome by use of 3 multiplex PCR assays in combination with length polymorphism analysis for the rapid genetic differentiation of 56 HSV-2 clinical isolates and 2 HSV-2 laboratory strains (gHSV-2 and MS). This new system was applied to a specific new HSV-2 variant recently identified in HIV-1-infected patients originating from West Africa. Our results confirm that microsatellite polymorphism analysis is an accurate tool for studying the epidemiology of HSV-2 infections. Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue JCM About JCM Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy JCM RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0095-1137 Online ISSN: 1098-660X Copyright © 2014 by the American Society for Microbiology. For an alternate route to JCM .asm.org, visit: JCM |
| Author | Sonia Burrel Zaïna Ait-Arkoub Henri Agut Claire Deback Emiliana P. Abrao Delphine Voujon David Boutolleau |
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| Cites_doi | 10.1128/AAC.00669-10 10.1084/jem.20101402 10.1186/1471-2334-2-7 10.1099/0022-1317-68-1-19 10.1016/j.jviromet.2004.01.013 10.1016/S0140-6736(07)61908-4 10.1038/74238 10.1128/JCM.39.6.2219-2226.2001 10.1128/JCM.01565-08 10.1128/JVI.73.12.9796-9802.1999 10.1128/iai.38.3.834-842.1982 10.1016/S0166-0934(02)00264-1 10.1136/sti.2006.020966 10.1007/s004120000089 10.1371/journal.ppat.1002282 10.1016/S0168-1702(97)01468-8 10.1016/j.antiviral.2005.11.004 10.1016/S1386-6532(02)00263-9 10.1073/pnas.0913586107 10.1093/genetics/131.2.471 10.1007/BF02300753 10.1016/j.febslet.2009.08.004 10.1016/j.jcv.2010.01.019 10.1073/pnas.72.11.4243 10.1128/JVI.73.8.6265-6270.1999 10.1093/infdis/140.3.295 10.1128/JCM.00054-06 10.1016/j.jcv.2013.03.008 10.1093/infdis/149.4.645 10.1038/nrg1348 10.1128/AAC.00615-10 10.1093/bib/bbn028 10.1128/jvi.69.4.2697-2699.1995 |
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Mendeley... The complete 154-kbp linear double-stranded genomic DNA sequence of herpes simplex virus 2 (HSV-2), consisting of two extended regions of unique sequences... |
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| SubjectTerms | Africa, Western Cytomegalovirus Genetic Variation Herpes Genitalis - virology Herpes simplex virus 1 Herpes simplex virus 2 Herpesvirus Herpesvirus 2, Human - classification Herpesvirus 2, Human - genetics Herpesvirus 2, Human - isolation & purification Human immunodeficiency virus Humans Microsatellite Repeats Multiplex Polymerase Chain Reaction - methods Polymorphism, Restriction Fragment Length Virology Virology - methods |
| Title | Molecular Characterization of Herpes Simplex Virus 2 Strains by Analysis of Microsatellite Polymorphism |
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