Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus
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Published in | Proceedings of the National Academy of Sciences - PNAS Vol. 116; no. 43; pp. 21350 - 21351 |
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Main Authors | , , , , , , , , |
Format | Journal Article |
Language | English |
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United States
National Academy of Sciences
22.10.2019
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Author | Nixon, Douglas F. Bendall, Matthew L. Iñiguez, Luis P. de Mulder Rougvie, Miguel Crandall, Keith A. Jones, Richard B. Reyes-Terán, Gustavo Ormsby, Christopher E. Stearrett, Nathaniel |
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BackLink | https://www.ncbi.nlm.nih.gov/pubmed/31594853$$D View this record in MEDLINE/PubMed |
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Cites_doi | 10.1038/nrg3117 10.1073/pnas.1814589115 10.1093/bioinformatics/btp692 10.1093/bioinformatics/btv422 10.1186/s13059-014-0550-8 10.1186/s13059-016-0881-8 10.1186/s12864-015-1308-8 10.1186/1471-2164-15-583 |
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Copyright | Copyright National Academy of Sciences Oct 22, 2019 Copyright © 2019 the Author(s). Published by PNAS. 2019 |
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References | 31594852 - Proc Natl Acad Sci U S A. 2019 Oct 22;116(43):21352-21353 30455304 - Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12565-12572 Bendall M. L. (e_1_3_4_2_2) 2018 Conesa A. (e_1_3_4_3_2) 2016; 17 Treangen T. J. (e_1_3_4_4_2) 2011; 13 Tokuyama M. (e_1_3_4_1_2) 2018; 115 Zhao S. (e_1_3_4_8_2) 2015; 16 Li B. (e_1_3_4_5_2) 2010; 26 Criscione S. W. (e_1_3_4_6_2) 2014; 15 Jin Y. (e_1_3_4_7_2) 2015; 31 Love M. I. (e_1_3_4_9_2) 2014; 15 |
References_xml | – volume: 13 start-page: 36 year: 2011 ident: e_1_3_4_4_2 article-title: Repetitive DNA and next-generation sequencing: Computational challenges and solutions publication-title: Nat. Rev. Genet. doi: 10.1038/nrg3117 contributor: fullname: Treangen T. J. – volume: 115 start-page: 12565 year: 2018 ident: e_1_3_4_1_2 article-title: ERVmap analysis reveals genome-wide transcription of human endogenous retroviruses publication-title: Proc. Natl. Acad. Sci. U.S.A. doi: 10.1073/pnas.1814589115 contributor: fullname: Tokuyama M. – volume: 26 start-page: 493 year: 2010 ident: e_1_3_4_5_2 article-title: RNA-Seq gene expression estimation with read mapping uncertainty publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp692 contributor: fullname: Li B. – volume: 31 start-page: 3593 year: 2015 ident: e_1_3_4_7_2 article-title: TEtranscripts: A package for including transposable elements in differential expression analysis of RNA-seq datasets publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv422 contributor: fullname: Jin Y. – volume: 15 start-page: 550 year: 2014 ident: e_1_3_4_9_2 article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 publication-title: Genome Biol. doi: 10.1186/s13059-014-0550-8 contributor: fullname: Love M. I. – volume: 17 start-page: 13 year: 2016 ident: e_1_3_4_3_2 article-title: A survey of best practices for RNA-seq data analysis publication-title: Genome Biol. doi: 10.1186/s13059-016-0881-8 contributor: fullname: Conesa A. – volume: 16 start-page: 97 year: 2015 ident: e_1_3_4_8_2 article-title: A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification publication-title: BMC Genomics doi: 10.1186/s12864-015-1308-8 contributor: fullname: Zhao S. – start-page: 398172 year: 2018 ident: e_1_3_4_2_2 article-title: Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression publication-title: bioRxiv contributor: fullname: Bendall M. L. – volume: 15 start-page: 583 year: 2014 ident: e_1_3_4_6_2 article-title: Transcriptional landscape of repetitive elements in normal and cancer human cells publication-title: BMC Genomics doi: 10.1186/1471-2164-15-583 contributor: fullname: Criscione S. W. |
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SubjectTerms | Biological Sciences Chronic conditions Endogenous Retroviruses Gene Expression Profiling Humans LETTERS Lupus Erythematosus, Systemic - genetics Systemic lupus erythematosus Transcriptome |
Title | Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus |
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