Delayed disease progression in HIV‐2: the importance of TRIM5α and the retroviral capsid

Summary HIV‐2 is thought to have entered the human population in the 1930s through cross‐species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV‐1, HIV‐2 has not led to a global pandemic, and recent data suggest that HIV‐2 prevalence is declining in some West African states where...

Full description

Saved in:
Bibliographic Details
Published inClinical and experimental immunology Vol. 196; no. 3; pp. 305 - 317
Main Authors Boswell, M. T., Rowland‐Jones, S. L.
Format Journal Article
LanguageEnglish
Published England Oxford University Press 01.06.2019
John Wiley and Sons Inc
Subjects
Online AccessGet full text
ISSN0009-9104
1365-2249
1365-2249
DOI10.1111/cei.13280

Cover

Abstract Summary HIV‐2 is thought to have entered the human population in the 1930s through cross‐species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV‐1, HIV‐2 has not led to a global pandemic, and recent data suggest that HIV‐2 prevalence is declining in some West African states where it was formerly endemic. Although many early isolates of HIV‐2 were derived from patients presenting with AIDS‐defining illnesses, it was noted that a much larger proportion of HIV‐2‐infected subjects behaved as long‐term non‐progressors (LTNP) than their HIV‐1‐infected counterparts. Many HIV‐2‐infected adults are asymptomatic, maintaining an undetectable viral load for over a decade. However, despite lower viral loads, HIV‐2 progresses to clinical AIDS without therapeutic intervention in most patients. In addition, successful treatment with anti‐retroviral therapy (ART) is more challenging than for HIV‐1. HIV‐2 is significantly more sensitive to restriction by host restriction factor tripartite motif TRIM5α than HIV‐1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV‐2 disease progression and focus on the important interactions between TRIM5α and HIV‐2 capsid in long‐term viral control. HIV‐2 is significantly more sensitive to restriction by host restriction factor TRIM5α than HIV‐1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV‐2 disease progression and focus on the potential importance of the interactions between TRIM5α and HIV‐2 capsid in long‐term viral control.
AbstractList HIV‐2 is thought to have entered the human population in the 1930s through cross‐species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV‐1, HIV‐2 has not led to a global pandemic, and recent data suggest that HIV‐2 prevalence is declining in some West African states where it was formerly endemic. Although many early isolates of HIV‐2 were derived from patients presenting with AIDS‐defining illnesses, it was noted that a much larger proportion of HIV‐2‐infected subjects behaved as long‐term non‐progressors (LTNP) than their HIV‐1‐infected counterparts. Many HIV‐2‐infected adults are asymptomatic, maintaining an undetectable viral load for over a decade. However, despite lower viral loads, HIV‐2 progresses to clinical AIDS without therapeutic intervention in most patients. In addition, successful treatment with anti‐retroviral therapy (ART) is more challenging than for HIV‐1. HIV‐2 is significantly more sensitive to restriction by host restriction factor tripartite motif TRIM5α than HIV‐1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV‐2 disease progression and focus on the important interactions between TRIM5α and HIV‐2 capsid in long‐term viral control.
Summary HIV‐2 is thought to have entered the human population in the 1930s through cross‐species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV‐1, HIV‐2 has not led to a global pandemic, and recent data suggest that HIV‐2 prevalence is declining in some West African states where it was formerly endemic. Although many early isolates of HIV‐2 were derived from patients presenting with AIDS‐defining illnesses, it was noted that a much larger proportion of HIV‐2‐infected subjects behaved as long‐term non‐progressors (LTNP) than their HIV‐1‐infected counterparts. Many HIV‐2‐infected adults are asymptomatic, maintaining an undetectable viral load for over a decade. However, despite lower viral loads, HIV‐2 progresses to clinical AIDS without therapeutic intervention in most patients. In addition, successful treatment with anti‐retroviral therapy (ART) is more challenging than for HIV‐1. HIV‐2 is significantly more sensitive to restriction by host restriction factor tripartite motif TRIM5α than HIV‐1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV‐2 disease progression and focus on the important interactions between TRIM5α and HIV‐2 capsid in long‐term viral control. HIV‐2 is significantly more sensitive to restriction by host restriction factor TRIM5α than HIV‐1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV‐2 disease progression and focus on the potential importance of the interactions between TRIM5α and HIV‐2 capsid in long‐term viral control.
HIV-2 is thought to have entered the human population in the 1930s through cross-species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV-1, HIV-2 has not led to a global pandemic, and recent data suggest that HIV-2 prevalence is declining in some West African states where it was formerly endemic. Although many early isolates of HIV-2 were derived from patients presenting with AIDS-defining illnesses, it was noted that a much larger proportion of HIV-2-infected subjects behaved as long-term non-progressors (LTNP) than their HIV-1-infected counterparts. Many HIV-2-infected adults are asymptomatic, maintaining an undetectable viral load for over a decade. However, despite lower viral loads, HIV-2 progresses to clinical AIDS without therapeutic intervention in most patients. In addition, successful treatment with anti-retroviral therapy (ART) is more challenging than for HIV-1. HIV-2 is significantly more sensitive to restriction by host restriction factor tripartite motif TRIM5α than HIV-1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV-2 disease progression and focus on the important interactions between TRIM5α and HIV-2 capsid in long-term viral control.HIV-2 is thought to have entered the human population in the 1930s through cross-species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV-1, HIV-2 has not led to a global pandemic, and recent data suggest that HIV-2 prevalence is declining in some West African states where it was formerly endemic. Although many early isolates of HIV-2 were derived from patients presenting with AIDS-defining illnesses, it was noted that a much larger proportion of HIV-2-infected subjects behaved as long-term non-progressors (LTNP) than their HIV-1-infected counterparts. Many HIV-2-infected adults are asymptomatic, maintaining an undetectable viral load for over a decade. However, despite lower viral loads, HIV-2 progresses to clinical AIDS without therapeutic intervention in most patients. In addition, successful treatment with anti-retroviral therapy (ART) is more challenging than for HIV-1. HIV-2 is significantly more sensitive to restriction by host restriction factor tripartite motif TRIM5α than HIV-1, and this difference in sensitivity is linked to differences in capsid structure. In this review we discuss the determinants of HIV-2 disease progression and focus on the important interactions between TRIM5α and HIV-2 capsid in long-term viral control.
Author Boswell, M. T.
Rowland‐Jones, S. L.
AuthorAffiliation 1 Nuffield Department of Medicine University of Oxford Oxford UK
AuthorAffiliation_xml – name: 1 Nuffield Department of Medicine University of Oxford Oxford UK
Author_xml – sequence: 1
  givenname: M. T.
  orcidid: 0000-0003-2152-1617
  surname: Boswell
  fullname: Boswell, M. T.
  organization: University of Oxford
– sequence: 2
  givenname: S. L.
  orcidid: 0000-0001-5788-6998
  surname: Rowland‐Jones
  fullname: Rowland‐Jones, S. L.
  email: sarah.rowland-jones@ndm.ox.ac.uk
  organization: University of Oxford
BackLink https://www.ncbi.nlm.nih.gov/pubmed/30773620$$D View this record in MEDLINE/PubMed
BookMark eNp9kc9u1DAQxi3Uim4LB14AWeJSDmn9L07CAalaCl2pCAkqLhwsx5m0rrJ2sLNFe-MReBVehIfgSTp0SwWVwJJl2fObzzPz7ZKtEAMQ8oSzA47r0IE_4FLU7AGZcanLQgjVbJEZY6wpGs7UDtnN-RKvWmvxkOxIVlVSCzYjn17BYNfQ0c5nsBnomOJ5gpx9DNQHerL4-PPrN_GCThdA_XKMabLBAY09PXu_eFv--E5t6G6iCaYUr3yyA3V2zL57RLZ7O2R4fHvukQ-vj8_mJ8XpuzeL-dFp4ZSSrGistpzLktmqtxwAel52qsYWdC1a1zaqb1qFD6KuetWqtmq165TsBJdKyD3ycqM6rtoldA7ChCWYMfmlTWsTrTd_R4K_MOfxyuiSKyUYCuzfCqT4eQV5MkufHQyDDRBX2QheS46_ywrRZ_fQy7hKAZszAmeOWzQNUk__rOiulN9TR-D5BnAp5pygv0M4M78cNeiouXEU2cN7rPOTndAebMYP_8v44gdY_1vazI8Xm4xr-gKx0w
CitedBy_id crossref_primary_10_5492_wjccm_v12_i5_264
crossref_primary_10_3390_cells12101351
crossref_primary_10_3389_fmicb_2020_01603
crossref_primary_10_1371_journal_pone_0229424
crossref_primary_10_1016_j_celrep_2025_115245
crossref_primary_10_3389_fimmu_2024_1378048
Cites_doi 10.1128/JVI.02548-09
10.4049/jimmunol.176.11.6973
10.1016/j.vaccine.2009.08.060
10.1371/journal.pone.0016121
10.1128/JVI.76.11.5667-5677.2002
10.4049/jimmunol.169.6.3400
10.1016/j.cell.2018.08.062
10.1016/j.meegid.2016.08.010
10.1371/journal.ppat.1007398
10.1128/JVI.00406-07
10.1097/QAD.0000000000000844
10.1073/pnas.1421607112
10.1097/QAD.0b013e32834c4adb
10.1371/journal.pone.0191709
10.1097/QAI.0000000000000604
10.1002/eji.201545451
10.1099/vir.0.038638-0
10.1007/s00251-017-1000-z
10.1086/511308
10.1038/nm1511
10.1038/nm0402-319
10.1086/524143
10.1128/JVI.01921-10
10.1002/eji.200940295
10.1016/j.tim.2011.03.006
10.1111/j.1600-065X.2010.00923.x
10.1182/blood-2012-12-472787
10.3855/jidc.2298
10.1086/598861
10.1126/science.2425430
10.1038/nature09337
10.1097/00002030-200312050-00006
10.1016/j.virol.2006.05.029
10.1126/science.1254031
10.1097/QAD.0b013e3282effa87
10.1111/tmi.12646
10.1086/646609
10.1371/journal.ppat.1003041
10.1186/1742-4690-7-46
10.1038/nm1520
10.1128/JVI.02978-14
10.1371/journal.pone.0170893
10.1371/journal.ppat.0040018
10.1128/JVI.00307-08
10.1128/JVI.00001-18
10.1371/journal.pmed.1001304
10.1097/QAD.0000000000000812
10.1128/mBio.01245-18
10.1038/nm.2004
10.1016/j.virol.2013.03.021
10.1056/NEJM200103083441003
10.1093/infdis/jiu175
10.1038/35073658
10.1002/rmv.1739
10.1186/1742-4690-3-54
10.1097/00002030-200209060-00010
10.1186/1742-4690-10-25
10.1371/journal.pone.0022779
10.1371/journal.ppat.1002439
10.1371/journal.ppat.1003461
10.1016/S0140-6736(96)91073-9
10.1128/JVI.00867-16
10.1038/srep45214
10.1172/JCI32380
10.1038/nature02343
10.1128/JVI.01217-08
10.1097/00002030-199611000-00019
10.1016/S0140-6736(96)04402-9
10.1097/QAI.0b013e3181f638ed
10.1097/QAD.0b013e3283528ad4
10.1128/JVI.00648-11
10.1086/651430
10.1038/417095a
10.1093/infdis/jit085
10.1038/nature26155
10.1097/QAD.0000000000001827
10.1186/1742-4690-10-50
10.1016/j.tips.2009.09.005
10.1093/infdis/jit262
10.1128/JVI.01806-16
10.1097/QAD.0000000000001758
10.1038/nrmicro3449
10.1128/JVI.79.14.8979-8990.2005
10.1097/01.aids.0000198077.30421.bf
10.1371/journal.ppat.0040016
10.1097/QAD.0b013e32835374db
10.1016/j.immuni.2013.11.002
10.1038/nature09976
10.1371/journal.pcbi.0030029
10.1371/journal.ppat.0030197
10.1038/326662a0
10.1002/eji.200737768
10.1038/354453a0
10.1371/journal.pone.0044411
10.1056/NEJMoa1113244
10.1128/JVI.00116-10
10.1128/JVI.00819-16
10.1097/QAD.0b013e32835ab12c
10.1128/JVI.79.18.11580-11587.2005
ContentType Journal Article
Copyright 2019 British Society for Immunology
2019 British Society for Immunology.
Copyright_xml – notice: 2019 British Society for Immunology
– notice: 2019 British Society for Immunology.
DBID AAYXX
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7T5
7U9
H94
M7N
7X8
5PM
DOI 10.1111/cei.13280
DatabaseName CrossRef
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
Immunology Abstracts
Virology and AIDS Abstracts
AIDS and Cancer Research Abstracts
Algology Mycology and Protozoology Abstracts (Microbiology C)
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
AIDS and Cancer Research Abstracts
Immunology Abstracts
Virology and AIDS Abstracts
Algology Mycology and Protozoology Abstracts (Microbiology C)
MEDLINE - Academic
DatabaseTitleList
AIDS and Cancer Research Abstracts
CrossRef

MEDLINE - Academic
MEDLINE
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Medicine
Biology
DocumentTitleAlternate Interaction of TRIM5α and HIV‐2 CA
EISSN 1365-2249
EndPage 317
ExternalDocumentID PMC6514420
30773620
10_1111_cei_13280
CEI13280
Genre reviewArticle
Research Support, Non-U.S. Gov't
Journal Article
Review
GeographicLocations Africa, Western
GeographicLocations_xml – name: Africa, Western
GrantInformation_xml – fundername: Centre for AIDS research, University of Kumamoto
– fundername: British HIV Association
– fundername: Commonwealth Scholarship Commission
  funderid: ZACS-2016-643
– fundername: Norges Forskningsråd
– fundername: Rosetrees Trust
– fundername: Medical Research Council
  grantid: MR/S020616/1
– fundername: Medical Research Council
  grantid: G0801751
– fundername: Medical Research Council
  grantid: MC_U137884180
– fundername: Medical Research Council
  grantid: MC_U190085854
– fundername: Commonwealth Scholarship Commission
  grantid: ZACS-2016-643
GroupedDBID ---
.3N
.55
.GA
.GJ
.Y3
05W
0R~
10A
169
29B
2WC
31~
36B
3O-
3SF
4.4
50Y
50Z
51W
51X
52M
52N
52O
52P
52R
52S
52T
52U
52V
52W
52X
53G
5GY
5HH
5LA
5VS
5WD
66C
6J9
702
7PT
8-0
8-1
8-3
8-4
8-5
8UM
930
A01
A03
A8Z
AABZA
AACZT
AAESR
AAEVG
AAFWJ
AAMMB
AAONW
AAPXW
AARHZ
AAUAY
AAVAP
AAZKR
ABCQN
ABCUV
ABDBF
ABDFA
ABEJV
ABEML
ABGNP
ABJNI
ABLJU
ABNHQ
ABOCM
ABPTD
ABPVW
ABQNK
ABVGC
ABXVV
ACAHQ
ACFBH
ACGFO
ACGFS
ACMXC
ACPOU
ACPRK
ACSCC
ACUFI
ACUHS
ACVCV
ACXQS
ADBBV
ADEOM
ADIPN
ADIYS
ADIZJ
ADKYN
ADMGS
ADOZA
ADQBN
ADVEK
ADXAS
ADZMN
AEFGJ
AEGXH
AEIMD
AEMQT
AENEX
AFBPY
AFEBI
AFFQV
AFFZL
AFGKR
AFRAH
AFTUV
AFXAL
AFZJQ
AGMDO
AGORE
AGUTN
AGXDD
AHGBF
AHMMS
AIACR
AIAGR
AIDQK
AIDYY
AIURR
AJAOE
AJBYB
AJDVS
AJEEA
AJNCP
ALAGY
ALMA_UNASSIGNED_HOLDINGS
ALXQX
AMBMR
AMYDB
AOIJS
ATGXG
ATUGU
AZBYB
AZVAB
BAFTC
BAWUL
BCRHZ
BEYMZ
BHBCM
BMXJE
BROTX
BRXPI
BY8
C45
CAG
COF
D-6
D-7
D-E
D-F
DCZOG
DIK
DPXWK
DR2
DRFUL
DRMAN
DRSTM
DU5
E3Z
EAD
EAP
EAS
EBB
EBC
EBD
EBS
EBX
EJD
EMB
EMK
EMOBN
ESX
EX3
F00
F01
F04
F5P
FUBAC
G-S
G.N
GODZA
GX1
H.X
H13
HF~
HZI
HZ~
IH2
IHE
IX1
J0M
J5H
K48
KBUDW
KBYEO
KOP
KSI
KSN
LATKE
LC2
LC3
LEEKS
LH4
LITHE
LOXES
LP6
LP7
LUTES
LW6
LYRES
MK4
MRFUL
MRMAN
MRSTM
MSFUL
MSMAN
MSSTM
MXFUL
MXMAN
MXSTM
N04
N05
N9A
NF~
NOMLY
NU-
O66
O9-
OAUYM
OBS
OCZFY
OHT
OIG
OJZSN
OK1
OPAEJ
OVD
OWPYF
P2P
P2W
P2X
P2Z
P4B
P4D
Q.N
Q11
QB0
Q~Q
R.K
ROL
ROX
RPM
RX1
SUPJJ
SV3
TEORI
TR2
TUS
UB1
V8K
W8V
W99
WBKPD
WHWMO
WIH
WIJ
WIK
WIN
WOHZO
WOQ
WOW
WQJ
WVDHM
WXI
X7M
XG1
Y6R
YFH
YOC
YUY
ZGI
ZXP
ZZTAW
~IA
~KM
~WT
AAHHS
AAYXX
ACCFJ
ADZOD
AEEZP
AEQDE
AIWBW
AJBDE
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7T5
7U9
H94
M7N
7X8
ESTFP
5PM
ID FETCH-LOGICAL-c4430-9a6a11350a7fa1eeef15d48249682bcb94f9b4482287f4b4b7b6cd43d213423
IEDL.DBID DR2
ISSN 0009-9104
1365-2249
IngestDate Thu Aug 21 14:10:18 EDT 2025
Tue Sep 09 07:40:31 EDT 2025
Wed Aug 13 06:06:31 EDT 2025
Mon Jul 21 05:36:19 EDT 2025
Tue Jul 01 03:53:09 EDT 2025
Thu Apr 24 23:06:03 EDT 2025
Wed Aug 20 07:26:56 EDT 2025
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 3
Keywords HIV-2
long term non-progression
TRIM5
capsid
Language English
License https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model
2019 British Society for Immunology.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c4430-9a6a11350a7fa1eeef15d48249682bcb94f9b4482287f4b4b7b6cd43d213423
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 14
ObjectType-Review-3
content type line 23
ORCID 0000-0003-2152-1617
0000-0001-5788-6998
OpenAccessLink https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/cei.13280
PMID 30773620
PQID 2224222299
PQPubID 36527
PageCount 13
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_6514420
proquest_miscellaneous_2183182237
proquest_journals_2224222299
pubmed_primary_30773620
crossref_primary_10_1111_cei_13280
crossref_citationtrail_10_1111_cei_13280
wiley_primary_10_1111_cei_13280_CEI13280
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate June 2019
PublicationDateYYYYMMDD 2019-06-01
PublicationDate_xml – month: 06
  year: 2019
  text: June 2019
PublicationDecade 2010
PublicationPlace England
PublicationPlace_xml – name: England
– name: Oxford
– name: Hoboken
PublicationTitle Clinical and experimental immunology
PublicationTitleAlternate Clin Exp Immunol
PublicationYear 2019
Publisher Oxford University Press
John Wiley and Sons Inc
Publisher_xml – name: Oxford University Press
– name: John Wiley and Sons Inc
References 2002; 16
2017; 7
2001; 344
1991; 354
2013; 27
2013; 208
2013; 207
2013; 23
2019; 10
2010; 467
2008; 38
2013; 441
2009; 199
2006; 176
2003; 17
2011; 56
2013; 121
2008; 4
2012; 367
2011; 19
1992; 50
2013; 9
2011; 472
1996; 347
2018; 175
2015; 89
2015; 45
2001; 410
2006; 20
1997; 349
2014; 209
2016; 90
2013; 10
2018; 1
2010; 28
2010; 236
2009; 200
5
2007; 3
2012; 26
2011; 25
2007; 21
2018; 32
2008; 197
2010; 7
2016; 46
2009; 15
2005; 79
2015; 13
2004; 82
2006; 12
1987; 326
2017; 69
1986; 233
2002; 76
2002; 8
2010; 201
2006; 3
2002; 417
2004; 427
2011; 6
2007; 13
1996; 10
2006; 353
2010; 84
2011; 7
2010; 40
2012; 93
2015; 69
2017; 91
2009; 30
2016; 1600693
2016; 1
2013; 39
2015; 29
2007; 117
2007; 195
2015; 112
2002; 169
2017; 12
2018; 92
2016; 21
2011; 85
2018
2017
2007; 81
2017; mi201744
2012; 6
2012; 7
2008; 82
2014; 345
2012; 8
2018; 14
2012; 9
2018; 13
de Silva (2022021406245795000_cei13280-bib-0059) 2018; 1
Onyango (2022021406245795000_cei13280-bib-0054) 2010; 28
Thomsen (2022021406245795000_cei13280-bib-0064) 2018; 32
Forbi (2022021406245795000_cei13280-bib-0004) 2012; 6
Fryer (2022021406245795000_cei13280-bib-0006) 2015; 29
Sousa (2022021406245795000_cei13280-bib-0086) 2002; 169
Merindol (2022021406245795000_cei13280-bib-0107) 2018; 14
Clavel (2022021406245795000_cei13280-bib-0001) 1986; 233
van der Loeff (2022021406245795000_cei13280-bib-0007) 2010; 7
Guyader (2022021406245795000_cei13280-bib-0034) 1987; 326
Jespersen (2022021406245795000_cei13280-bib-0090) 2016; 21
Esbjörnsson (2022021406245795000_cei13280-bib-0042) 2012; 367
Veillette (2022021406245795000_cei13280-bib-0024) 2013; 10
Uchil (2022021406245795000_cei13280-bib-0014) 2008; 4
Skar (2022021406245795000_cei13280-bib-0043) 2010; 84
Aaby (2022021406245795000_cei13280-bib-0102) 1996; 10
Nowroozalizadeh (2022021406245795000_cei13280-bib-0088) 2010; 201
Poulsen (2022021406245795000_cei13280-bib-0103) 1997; 349
Lemey (2022021406245795000_cei13280-bib-0045) 2007; 3
Meyerson (2022021406245795000_cei13280-bib-0017) 2011; 19
Wu (2022021406245795000_cei13280-bib-0031) 2015; 89
Lahaye (2022021406245795000_cei13280-bib-0052) 2018; 175
Naranbhai (2022021406245795000_cei13280-bib-0060) 2017; 69
Addo (2022021406245795000_cei13280-bib-0094) 2014; 209
Sawyer (2022021406245795000_cei13280-bib-0018) 2007; 3
Nyamweya (2022021406245795000_cei13280-bib-0085) 2012; 7
Allsopp (2022021406245795000_cei13280-bib-0061) 1992; 50
O’Connell (2022021406245795000_cei13280-bib-0076) 2009; 30
Soares (2022021406245795000_cei13280-bib-0072) 2011; 85
Schaller (2022021406245795000_cei13280-bib-0053) 2011; 7
Jallow (2022021406245795000_cei13280-bib-0055) 2015; 45
Tchounga (2022021406245795000_cei13280-bib-0008) 2016; 1
MacNeil (2022021406245795000_cei13280-bib-0044) 2007; 195
Francisco (2022021406245795000_cei13280-bib-0071) 2010; 236
de Silva (2022021406245795000_cei13280-bib-0080) 2013; 121
Prince (2022021406245795000_cei13280-bib-0038) 2012; 8
Alatrakchi (2022021406245795000_cei13280-bib-0068) 2006; 20
Leligdowicz (2022021406245795000_cei13280-bib-0078) 2010; 40
Song (2022021406245795000_cei13280-bib-0056) 2007; 81
Visseaux (2022021406245795000_cei13280-bib-0003) 2016; 46
Ariën (2022021406245795000_cei13280-bib-0040) 2005; 79
Peterson (2022021406245795000_cei13280-bib-0099) 2011; 25
Matheron (2022021406245795000_cei13280-bib-0104) 2003; 17
Sterling (2022021406245795000_cei13280-bib-0095) 2001; 344
Mamede (2022021406245795000_cei13280-bib-0022) 2017; 7
Claiborne (2022021406245795000_cei13280-bib-0037) 2015; 112
Jaffar (2022021406245795000_cei13280-bib-0083) 2004; 82
Dufour (2022021406245795000_cei13280-bib-0109) 2018; 13
Ohmine (2022021406245795000_cei13280-bib-0023) 2011; 6
Stremlau (2022021406245795000_cei13280-bib-0020) 2004; 427
Nyamweya (2022021406245795000_cei13280-bib-0009) 2013; 23
Doyle (2022021406245795000_cei13280-bib-0013) 2015; 13
Rahm (2022021406245795000_cei13280-bib-0027) 2013; 441
Battivelli (2022021406245795000_cei13280-bib-0015) 2011; 85
Kootstra (2022021406245795000_cei13280-bib-0029) 2007; 21
Hunt (2022021406245795000_cei13280-bib-0106) 2008; 197
Rihn (2022021406245795000_cei13280-bib-0108) 2013; 9
Grossman (2022021406245795000_cei13280-bib-0084) 2002; 8
Ylinen (2022021406245795000_cei13280-bib-0021) 2005; 79
Meier (2022021406245795000_cei13280-bib-0096) 2009; 15
Forshey (2022021406245795000_cei13280-bib-0050) 2002; 76
Morger (2022021406245795000_cei13280-bib-0019) 2017
Blaak (2022021406245795000_cei13280-bib-0041) 2006; 353
Hu (2022021406245795000_cei13280-bib-0110) 2018
Beer (2022021406245795000_cei13280-bib-0036)
Balestre (2022021406245795000_cei13280-bib-0101) 2012; 26
van Manen (2022021406245795000_cei13280-bib-0028) 2008; 4
Duvall (2022021406245795000_cei13280-bib-0069) 2008; 38
Nakayama (2022021406245795000_cei13280-bib-0033) 2015; 29
Pertel (2022021406245795000_cei13280-bib-0105) 2011; 472
Esbjörnsson (2022021406245795000_cei13280-bib-0010) 2018
Okulicz (2022021406245795000_cei13280-bib-0011) 2009; 200
Douek (2022021406245795000_cei13280-bib-0066) 2002; 417
Duvall (2022021406245795000_cei13280-bib-0067) 2006; 176
Cavaleiro (2022021406245795000_cei13280-bib-0089) 2013; 207
Palm (2022021406245795000_cei13280-bib-0046) 2019; 10
Carlson (2022021406245795000_cei13280-bib-0097) 2014; 345
de Silva (2022021406245795000_cei13280-bib-0047) 2013; 27
Boullé (2022021406245795000_cei13280-bib-0098) 2015; 69
Diouf (2022021406245795000_cei13280-bib-0063); 5
Goldschmidt (2022021406245795000_cei13280-bib-0026) 2006; 3
Foxall (2022021406245795000_cei13280-bib-0070) 2008; 82
Phillips (2022021406245795000_cei13280-bib-0075) 1991; 354
Olesen (2022021406245795000_cei13280-bib-0005) 2018; 32
Darby (2022021406245795000_cei13280-bib-0100) 1996; 347
Angin (2022021406245795000_cei13280-bib-0081) 2016; 1600693
Kumar (2022021406245795000_cei13280-bib-0049) 2018; 92
Faria (2022021406245795000_cei13280-bib-0002) 2012; 93
Wilson (2022021406245795000_cei13280-bib-0016) 2008; 82
Pertel (2022021406245795000_cei13280-bib-0025) 2011; 472
Kiepiela (2022021406245795000_cei13280-bib-0077) 2007; 13
Schommers (2022021406245795000_cei13280-bib-0051) 2016; 90
Fonsah (2022021406245795000_cei13280-bib-0091) 2017; 12
Leligdowicz (2022021406245795000_cei13280-bib-0079) 2007; 117
Lahaye (2022021406245795000_cei13280-bib-0048) 2013; 39
Brenchley (2022021406245795000_cei13280-bib-0087) 2006; 12
Schim van der Loeff (2022021406245795000_cei13280-bib-0012) 2002; 16
Takeuchi (2022021406245795000_cei13280-bib-0058) 2013; 10
Tendeiro (2022021406245795000_cei13280-bib-0073) 2012; 26
Sewram (2022021406245795000_cei13280-bib-0030) 2009; 199
Cornell (2022021406245795000_cei13280-bib-0092) 2012; 9
Selhorst (2022021406245795000_cei13280-bib-0039) 2017; 91
Manel (2022021406245795000_cei13280-bib-0035) 2010; 467
Yindom (2022021406245795000_cei13280-bib-0062) 2010; 84
Fernandes (2022021406245795000_cei13280-bib-0082) 2017; mi201744
Hennig (2022021406245795000_cei13280-bib-0065) 2011; 56
Jimenez-Moyano (2022021406245795000_cei13280-bib-0032) 2016; 90
Miyamoto (2022021406245795000_cei13280-bib-0057) 2011; 6
McMichael (2022021406245795000_cei13280-bib-0074) 2001; 410
Chang (2022021406245795000_cei13280-bib-0093) 2013; 208
References_xml – volume: 46
  start-page: 233
  year: 2016
  end-page: 40
  article-title: HIV‐2 molecular epidemiology
  publication-title: Infect Genet Evol
– volume: 90
  start-page: 7579
  year: 2016
  end-page: 86
  article-title: Changes in HIV‐1 capsid stability induced by common cytotoxic‐T‐lymphocyte‐driven viral sequence mutations
  publication-title: J Virol
– volume: 76
  start-page: 5667
  year: 2002
  end-page: 77
  article-title: Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication
  publication-title: J Virol
– volume: 90
  start-page: 8552
  year: 2016
  end-page: 62
  article-title: Nonhuman TRIM5 variants enhance recognition of HIV‐1‐infected cells by CD8+ T cells.
  publication-title: J Virol
– volume: 7
  start-page: 46
  year: 2010
  article-title: Undetectable plasma viral load predicts normal survival in HIV‐2‐infected people in a West African village
  publication-title: Retrovirology
– volume: 27
  start-page: 125
  year: 2013
  end-page: 34
  article-title: Population dynamics of HIV‐2 in rural West Africa: comparison with HIV‐1 and ongoing transmission at the heart of the epidemic
  publication-title: AIDS
– volume: 467
  start-page: 214
  year: 2010
  end-page: 7
  article-title: A cryptic sensor for HIV‐1 activates antiviral innate immunity in dendritic cells
  publication-title: Nature
– volume: 367
  start-page: 224
  year: 2012
  end-page: 32
  article-title: Inhibition of HIV‐1 disease progression by contemporaneous HIV‐2 infection
  publication-title: N Engl J Med
– volume: 5
  start-page: 1
  end-page: 7
  article-title: Associations between MHC class I and susceptibility to HIV‐2 disease progression
  publication-title: J Hum Virol
– volume: 1
  year: 2016
  article-title: Mortality and survival patterns of people living with HIV‐2
  publication-title: Curr Opin HIV AIDS
– volume: 121
  start-page: 4330
  year: 2013
  end-page: 9
  article-title: Correlates of T‐cell‐mediated viral control and phenotype of CD8+ T cells in HIV‐2, a naturally contained human retroviral infection
  publication-title: Blood
– volume: 82
  start-page: 462
  year: 2004
  end-page: 9
  article-title: The natural history of HIV‐1 and HIV‐2 infections in adults in Africa: a literature review
  publication-title: Bull World Health Organ
– volume: 353
  start-page: 144
  year: 2006
  end-page: 54
  article-title: replication capacity of HIV‐2 variants from long‐term aviremic individuals
  publication-title: Virology
– volume: 13
  start-page: 46
  year: 2007
  end-page: 53
  article-title: CD8+ T‐cell responses to different HIV proteins have discordant associations with viral load
  publication-title: Nat Med
– volume: 117
  start-page: 3067
  year: 2007
  article-title: Robust Gag‐specific T cell responses characterize viremia control in HIV‐2 infection
  publication-title: J Clin Invest
– volume: mi201744
  year: 2017
  article-title: HIV‐2 infection is associated with preserved GALT homeostasis and epithelial integrity despite ongoing mucosal viral replication
  publication-title: Mucosal Immunol
– volume: 112
  start-page: E1480
  year: 2015
  end-page: 9
  article-title: Replicative fitness of transmitted HIV‐1 drives acute immune activation, proviral load in memory CD4+ T cells, and disease progression
  publication-title: Proc Natl Acad Sci USA
– volume: 10
  year: 2019
  article-title: Low postseroconversion CD4 T‐cell level is associated with faster disease progression and higher viral evolutionary rate in HIV‐2 infection.
  publication-title: MBio
– volume: 417
  start-page: 95
  year: 2002
  end-page: 8
  article-title: HIV preferentially infects HIV‐specific CD4+ T cells
  publication-title: Nature
– volume: 91
  start-page: e01806
  year: 2017
  end-page: 16
  article-title: Replication capacity of viruses from acute infection drives HIV‐1 disease progression.
  publication-title: J Virol
– volume: 176
  start-page: 6973
  year: 2006
  end-page: 81
  article-title: Maintenance of HIV‐specific CD4+ T cell help distinguishes HIV‐2 from HIV‐1 infection
  publication-title: J Immunol
– volume: 233
  start-page: 343
  year: 1986
  end-page: 6
  article-title: Isolation of a new human retrovirus from West African patients with AIDS
  publication-title: Science
– volume: 10
  start-page: 50
  year: 2013
  article-title: High level of susceptibility to human TRIM5α conferred by HIV‐2 capsid sequences
  publication-title: Retrovirology
– volume: 13
  start-page: 403
  year: 2015
  end-page: 13
  article-title: HIV‐1 and interferons: who’s interfering with whom?
  publication-title: Nat Rev Microbiol
– volume: 26
  start-page: 951
  year: 2012
  end-page: 7
  article-title: Effect of age on immunological response in the first year of antiretroviral therapy in HIV‐1‐infected adults in West Africa
  publication-title: AIDS
– start-page: JVI.01541‐17
  year: 2017
  article-title: The three‐fold axis of the HIV‐1 capsid lattice is the species‐specific binding interface for TRIM5α
  publication-title: J Virol
– volume: 8
  start-page: 319
  year: 2002
  end-page: 23
  article-title: CD4+ T‐cell depletion in HIV infection: are we closer to understanding the cause?
  publication-title: Nat Med
– volume: 9
  start-page: e1001304
  year: 2012
  article-title: Gender differences in survival among adult patients starting antiretroviral therapy in South Africa: a multicentre cohort study.
  publication-title: PLOS Med
– volume: 79
  start-page: 11580
  year: 2005
  end-page: 7
  article-title: Differential restriction of human immunodeficiency virus type 2 and simian immunodeficiency virus SIVmac by TRIM5 alleles
  publication-title: J Virol
– volume: 21
  start-page: 253
  year: 2016
  end-page: 62
  article-title: Differential effects of sex in a West African cohort of HIV‐1, HIV‐2 and HIV‐1/2 dually infected patients: men are worse off
  publication-title: Trop Med Int Heal
– volume: 28
  start-page: B60
  year: 2010
  end-page: 7
  article-title: HIV‐2 capsids distinguish high and low virus load patients in a West African community cohort
  publication-title: Vaccine
– volume: 197
  start-page: 126
  year: 2008
  end-page: 33
  article-title: Relationship between T cell activation and CD4+ t cell count in HIV‐seropositive individuals with undetectable plasma HIV RNA levels in the absence of therapy
  publication-title: J Infect Dis
– volume: 19
  start-page: 286
  year: 2011
  end-page: 94
  article-title: Two‐stepping through time: mammals and viruses
  publication-title: Trends Microbiol
– volume: 9
  start-page: e1003461
  year: 2013
  article-title: Extreme genetic fragility of the HIV‐1 capsid
  publication-title: PLOS Pathog
– volume: 93
  start-page: 889
  issue: Pt 4
  year: 2012
  end-page: 99
  article-title: Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A
  publication-title: J Gen Virol
– volume: 32
  start-page: 721
  year: 2018
  end-page: 8
  article-title: The influence of human leukocyte antigen‐types on disease progression among HIV‐2 infected patients in Guinea‐Bissau
  publication-title: AIDS
– volume: 208
  start-page: 830
  year: 2013
  end-page: 8
  article-title: Higher expression of several interferon‐stimulated genes in HIV‐1‐infected females after adjusting for the level of viral replication
  publication-title: J Infect Dis
– volume: 344
  start-page: 720
  year: 2001
  end-page: 5
  article-title: Initial plasma HIV‐1 RNA levels and progression to AIDS in women and men
  publication-title: N Engl J Med
– volume: 56
  start-page: 1
  year: 2011
  end-page: 8
  article-title: CD4 intragenic SNPs associate with HIV‐2 plasma viral load and CD4 count in a community‐based study from Guinea‐Bissau, West Africa
  publication-title: J Acquir Immune Defic Syndr
– volume: 29
  start-page: 2479
  year: 2015
  end-page: 86
  article-title: Predicting the extinction of HIV‐2 in rural Guinea‐Bissau
  publication-title: AIDS
– volume: 38
  start-page: 350
  year: 2008
  end-page: 63
  article-title: Polyfunctional T cell responses are a hallmark of HIV‐2 infection
  publication-title: Eur J Immunol
– volume: 50
  start-page: 411
  year: 1992
  end-page: 21
  article-title: Interethnic genetic differentiation in Africa: HLA class I antigens in The Gambia
  publication-title: Am J Hum Genet
– year: 2018
  article-title: Long‐term follow‐up of HIV‐2‐related AIDS and mortality in Guinea‐Bissau: a prospective open cohort study
  publication-title: Lancet HIV
– volume: 3
  start-page: 0282
  year: 2007
  end-page: 92
  article-title: Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics
  publication-title: PLOS Comput Biol
– volume: 69
  start-page: 355
  year: 2015
  end-page: 64
  article-title: Gender differences in adherence and response to antiretroviral treatment in the Stratall trial in rural district hospitals in Cameroon
  publication-title: JAIDS J Acquir Immune Defic Syndr
– volume: 4
  start-page: e16
  year: 2008
  article-title: E3 ligases interfere with early and late stages of the retroviral life cycle
  publication-title: PLOS Pathog
– volume: 15
  start-page: 955
  year: 2009
  end-page: 9
  article-title: Sex differences in the Toll‐like receptor‐mediated response of plasmacytoid dendritic cells to HIV‐1
  publication-title: Nat Med
– volume: 84
  start-page: 7412
  year: 2010
  end-page: 5
  article-title: HIV‐2 genetic evolution in patients with advanced disease is faster than that in matched HIV‐1 patients
  publication-title: J Virol
– volume: 410
  start-page: 980
  year: 2001
  end-page: 7
  article-title: Cellular immune responses to HIV
  publication-title: Nature
– volume: 427
  start-page: 848
  year: 2004
  end-page: 53
  article-title: The cytoplasmic body component TRIM5α restricts HIV‐1 infection in Old World monkeys
  publication-title: Nature
– volume: 89
  start-page: 2233
  year: 2015
  end-page: 40
  article-title: TRIM5α restriction affects clinical outcome and disease progression in simian immunodeficiency virus‐infected rhesus macaques.
  publication-title: J Virol
– volume: 6
  start-page: 854
  year: 2012
  end-page: 9
  article-title: Absence of routine molecular testing and prevalence of HIV‐2 infection in regions hardest‐hit by HIV infection
  publication-title: J Infect Dev Ctries
– volume: 236
  start-page: 219
  year: 2010
  end-page: 42
  article-title: The PD‐1 pathway in tolerance and autoimmunity
  publication-title: Immunol Rev
– volume: 7
  start-page: 1
  year: 2012
  end-page: 11
  article-title: Are plasma biomarkers of immune activation predictive of HIV progression: a longitudinal comparison and analyses in HIV‐1 and HIV‐2 infections?
  publication-title: PLOS ONE
– volume: 207
  start-page: 1730
  year: 2013
  end-page: 42
  article-title: Monocyte and myeloid dendritic cell activation occurs throughout HIV type 2 infection, an attenuated form of HIV disease
  publication-title: J Infect Dis
– year: 2018
  article-title: Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
  publication-title: Nature
– volume: 4
  start-page: e18
  year: 2008
  article-title: The Effect of Trim5 polymorphisms on the clinical course of HIV‐1 infection
  publication-title: PLOS Pathog
– volume: 12
  start-page: e0170893
  year: 2017
  article-title: Adherence to antiretroviral therapy (ART) in Yaoundé‐Cameroon: association with opportunistic infections, depression, art regimen and side effects.
  publication-title: PLOS ONE
– volume: 40
  start-page: 1963
  year: 2010
  end-page: 72
  article-title: Highly avid, oligoclonal, early‐differentiated antigen‐specific CD8+ T cells in chronic HIV‐2 infection
  publication-title: Eur J Immunol
– volume: 84
  start-page: 8202
  year: 2010
  end-page: 8
  article-title: Influence of HLA class I and HLA‐KIR compound genotypes on HIV‐2 infection and markers of disease progression in a Manjako community in West Africa
  publication-title: J Virol
– volume: 39
  start-page: 1132
  year: 2013
  end-page: 42
  article-title: The capsids of HIV‐1 and HIV‐2 determine immune detection of the viral cDNA by the innate sensor cGAS in dendritic Cells
  publication-title: Immunity
– volume: 10
  start-page: 25
  year: 2013
  article-title: The V86M mutation in HIV‐1 capsid confers resistance to TRIM5α by abrogation of cyclophilin a‐dependent restriction and enhancement of viral nuclear import
  publication-title: Retrovirology
– volume: 17
  start-page: 2593
  year: 2003
  end-page: 601
  article-title: Factors associated with clinical progression in HIV‐2 infected‐patients: the French ANRS cohort
  publication-title: AIDS
– volume: 69
  start-page: 489
  year: 2017
  end-page: 98
  article-title: Host genetic variation and HIV disease: from mapping to mechanism
  publication-title: Immunogenetics
– volume: 13
  start-page: e0191709
  year: 2018
  article-title: Editing of the human TRIM5 gene to introduce mutations with the potential to inhibit HIV‐1.
  publication-title: PLOS ONE
– volume: 45
  start-page: 2232
  year: 2015
  end-page: 42
  article-title: The presence of prolines in the flanking region of an immunodominant HIV‐2 gag epitope influences the quality and quantity of the epitope generated
  publication-title: Eur J Immunol
– volume: 92
  start-page: e00001
  year: 2018
  end-page: 18
  article-title: HIV‐1 activation of innate immunity depends strongly on the intracellular level of TREX1 and sensing of incomplete reverse transcription products
  publication-title: J Virol
– volume: 82
  start-page: 7243
  year: 2008
  end-page: 7
  article-title: Rhesus macaque TRIM5 alleles have divergent antiretroviral specificities
  publication-title: J Virol
– volume: 85
  start-page: 7828
  year: 2011
  end-page: 35
  article-title: Modulation of TRIM5alpha activity in human cells by alternatively spliced TRIM5 isoforms
  publication-title: J Virol
– volume: 199
  start-page: 1657
  year: 2009
  end-page: 63
  article-title: Human TRIM5α expression levels and reduced susceptibility to HIV‐1 infection
  publication-title: J Infect Dis
– volume: 20
  start-page: 29
  year: 2006
  end-page: 34
  article-title: Proliferative, IFNgamma and IL‐2‐producing T‐cell responses to HIV‐2 in untreated HIV‐2 infection
  publication-title: AIDS
– volume: 30
  start-page: 631
  year: 2009
  end-page: 7
  article-title: Elucidating the elite: mechanisms of control in HIV‐1 infection
  publication-title: Trends Pharmacol Sci
– volume: 347
  start-page: 1573
  year: 1996
  end-page: 9
  article-title: Importance of age at infection with HIV‐1 for survival and development of AIDS in UK haemophilia population. UK Haemophilia Centre Directors’ Organisation
  publication-title: Lancet
– volume: 6
  start-page: e16121
  year: 2011
  article-title: The antiviral spectra of TRIM5α orthologues and human TRIM family proteins against lentiviral production
  publication-title: PLOS ONE
– volume: 1600693
  year: 2016
  article-title: Preservation of lymphopoietic potential and virus suppressive capacity by CD8+ T cells in HIV‐2‐infected controllers
  publication-title: J Immunol
– volume: 79
  start-page: 8979
  year: 2005
  end-page: 90
  article-title: The replicative fitness of primary human immunodeficiency virus type 1 (HIV‐1) group M, HIV‐1 group O, and HIV‐2 isolates
  publication-title: J Virol
– volume: 354
  start-page: 453
  year: 1991
  end-page: 9
  article-title: Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
  publication-title: Nature
– volume: 349
  start-page: 911
  year: 1997
  end-page: 4
  article-title: 9‐year HIV‐2‐associated mortality in an urban community in Bissau, west Africa
  publication-title: Lancet
– volume: 7
  start-page: 45214
  year: 2017
  article-title: Cyclophilins and nucleoporins are required for infection mediated by capsids from circulating HIV‐2 primary isolates
  publication-title: Sci Rep
– volume: 12
  start-page: 1365
  year: 2006
  end-page: 71
  article-title: Microbial translocation is a cause of systemic immune activation in chronic HIV infection
  publication-title: Nat Med
– volume: 21
  start-page: 2015
  year: 2007
  end-page: 23
  article-title: The presence of the Trim5α escape mutation H87Q in the capsid of late stage HIV‐1 variants is preceded by a prolonged asymptomatic infection phase
  publication-title: AIDS
– volume: 14
  start-page: e1007398
  year: 2018
  article-title: HIV‐1 capsids from B27/B57+ elite controllers escape Mx2 but are targeted by TRIM5α, leading to the induction of an antiviral state.
  publication-title: PLOS Pathog
– volume: 82
  start-page: 9795
  year: 2008
  end-page: 9
  article-title: Gag‐specific CD4+ T‐cell frequency is inversely correlated with proviral load and directly correlated with immune activation in infection with human immunodeficiency virus type 2 (HIV‐2) but not HIV‐1
  publication-title: J Virol
– volume: 85
  start-page: 2429
  year: 2011
  end-page: 38
  article-title: Cell‐associated viral burden provides evidence of ongoing viral replication in aviremic HIV‐2‐infected patients
  publication-title: J Virol
– volume: 201
  start-page: 1150
  year: 2010
  end-page: 4
  article-title: Microbial translocation correlates with the severity of both HIV‐1 and HIV‐2 infections
  publication-title: J Infect Dis
– volume: 472
  start-page: 361
  year: 2011
  end-page: 5
  article-title: TRIM5 is an innate immune sensor for the retrovirus capsid lattice
  publication-title: Nature
– volume: 345
  start-page: 1254031-13
  year: 2014
  article-title: Selection bias at the heterosexual HIV‐1 transmission bottleneck
  publication-title: Science
– volume: 10
  start-page: 1585
  year: 1996
  end-page: 90
  article-title: Age of wife as a major determinant of male‐to‐female transmission of HIV‐2 infection: a community study from rural West Africa
  publication-title: AIDS
– volume: 81
  start-page: 7280
  year: 2007
  end-page: 5
  article-title: A single amino acid of the human immunodeficiency virus type 2 capsid affects its replication in the presence of cynomolgus monkey and human TRIM5 s
  publication-title: J Virol
– volume: 23
  start-page: 221
  year: 2013
  end-page: 40
  article-title: Comparing HIV‐1 and HIV‐2 infection: lessons for viral immunopathogenesis
  publication-title: Rev Med Virol
– volume: 6
  start-page: e22779
  year: 2011
  article-title: A single amino acid of human immunodeficiency virus type 2 capsid protein affects conformation of two external loops and viral sensitivity to TRIM5α.
  publication-title: PLOS ONE
– volume: 326
  start-page: 662
  year: 1987
  end-page: 9
  article-title: Genome organization and transactivation of the human immunodeficiency virus type 2
  publication-title: Nature
– volume: 7
  start-page: e1002439
  year: 2011
  article-title: HIV‐1 capsid–cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
  publication-title: PLOS Pathog
– volume: 195
  start-page: 726
  year: 2007
  end-page: 33
  article-title: Long‐term intrapatient viral evolution during HIV‐2 infection
  publication-title: J Infect Dis
– volume: 26
  start-page: 1065
  year: 2012
  end-page: 71
  article-title: PD‐1 and its ligand PD‐L1 are progressively up‐regulated on CD4 and CD8 T‐cells in HIV‐2 infection irrespective of the presence of viremia
  publication-title: AIDS
– volume: 8
  start-page: e1003041
  year: 2012
  article-title: Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV‐1 pathogenesis
  publication-title: PLOS Pathog
– volume: 200
  start-page: 1714
  year: 2009
  end-page: 23
  article-title: Clinical outcomes of elite controllers, viremic controllers, and long‐term nonprogressors in the US department of defense HIV natural history study
  publication-title: J Infect Dis
– volume: 29
  start-page: 1733
  year: 2015
  end-page: 43
  article-title: Impact of TRIM5α
  publication-title: AIDS
– volume: 175
  start-page: 488
  year: 2018
  end-page: 501.e22
  article-title: NONO detects the nuclear HIV capsid to promote cGAS‐mediated innate immune activation
  publication-title: Cell
– volume: 209
  start-page: S86
  issue: Suppl 3
  year: 2014
  end-page: 92
  article-title: Sex‐based differences in HIV type 1 pathogenesis
  publication-title: J Infect Dis
– volume: 1
  year: 2018
  article-title: HLA‐associated polymorphisms in the HIV‐2 capsid highlight key differences between HIV‐1 and HIV‐2 immune adaptation
  publication-title: AIDS
– volume: 441
  start-page: 162
  year: 2013
  end-page: 70
  article-title: Susceptibility and adaptation to human TRIM5α alleles at positive selected sites in HIV‐1 capsid
  publication-title: Virology
– volume: 169
  start-page: 3400
  year: 2002
  end-page: 6
  article-title: CD4 T cell depletion is linked directly to immune activation in the pathogenesis of HIV‐1 and HIV‐2 but only indirectly to the viral load
  publication-title: J Immunol
– volume: 3
  start-page: 54
  year: 2006
  article-title: Role of common human TRIM5alpha variants in HIV‐1 disease progression
  publication-title: Retrovirology
– volume: 32
  start-page: 1193
  year: 2018
  end-page: 8
  article-title: HIV‐2 continues to decrease, whereas HIV‐1 is stabilizing in Guinea‐Bissau
  publication-title: AIDS
– volume: 3
  start-page: e197
  year: 2007
  article-title: Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals
  publication-title: PLOS Pathog
– volume: 16
  start-page: 1775
  year: 2002
  end-page: 83
  article-title: Mortality of HIV‐1, HIV‐2 and HIV‐1/HIV‐2 dually infected patients in a clinic‐based cohort in The Gambia
  publication-title: AIDS
– volume: 25
  start-page: 2167
  year: 2011
  end-page: 75
  article-title: Mortality and immunovirological outcomes on antiretroviral therapy in HIV‐1 and HIV‐2‐infected individuals in The Gambia
  publication-title: AIDS
– volume: 84
  start-page: 7412
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0043
  article-title: HIV-2 genetic evolution in patients with advanced disease is faster than that in matched HIV-1 patients
  publication-title: J Virol
  doi: 10.1128/JVI.02548-09
– volume: 176
  start-page: 6973
  year: 2006
  ident: 2022021406245795000_cei13280-bib-0067
  article-title: Maintenance of HIV-specific CD4+ T cell help distinguishes HIV-2 from HIV-1 infection
  publication-title: J Immunol
  doi: 10.4049/jimmunol.176.11.6973
– volume: 28
  start-page: B60
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0054
  article-title: HIV-2 capsids distinguish high and low virus load patients in a West African community cohort
  publication-title: Vaccine
  doi: 10.1016/j.vaccine.2009.08.060
– volume: 1600693
  year: 2016
  ident: 2022021406245795000_cei13280-bib-0081
  article-title: Preservation of lymphopoietic potential and virus suppressive capacity by CD8+ T cells in HIV-2-infected controllers
  publication-title: J Immunol
– volume: 6
  start-page: e16121
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0023
  article-title: The antiviral spectra of TRIM5α orthologues and human TRIM family proteins against lentiviral production
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0016121
– volume: 76
  start-page: 5667
  year: 2002
  ident: 2022021406245795000_cei13280-bib-0050
  article-title: Formation of a human immunodeficiency virus type 1 core of optimal stability is crucial for viral replication
  publication-title: J Virol
  doi: 10.1128/JVI.76.11.5667-5677.2002
– volume: 169
  start-page: 3400
  year: 2002
  ident: 2022021406245795000_cei13280-bib-0086
  article-title: CD4 T cell depletion is linked directly to immune activation in the pathogenesis of HIV-1 and HIV-2 but only indirectly to the viral load
  publication-title: J Immunol
  doi: 10.4049/jimmunol.169.6.3400
– volume: 175
  start-page: 488
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0052
  article-title: NONO detects the nuclear HIV capsid to promote cGAS-mediated innate immune activation
  publication-title: Cell
  doi: 10.1016/j.cell.2018.08.062
– volume: 46
  start-page: 233
  year: 2016
  ident: 2022021406245795000_cei13280-bib-0003
  article-title: HIV-2 molecular epidemiology
  publication-title: Infect Genet Evol
  doi: 10.1016/j.meegid.2016.08.010
– volume: 14
  start-page: e1007398
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0107
  article-title: HIV-1 capsids from B27/B57+ elite controllers escape Mx2 but are targeted by TRIM5α, leading to the induction of an antiviral state.
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.1007398
– volume: 81
  start-page: 7280
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0056
  article-title: A single amino acid of the human immunodeficiency virus type 2 capsid affects its replication in the presence of cynomolgus monkey and human TRIM5 s
  publication-title: J Virol
  doi: 10.1128/JVI.00406-07
– volume: 82
  start-page: 462
  year: 2004
  ident: 2022021406245795000_cei13280-bib-0083
  article-title: The natural history of HIV-1 and HIV-2 infections in adults in Africa: a literature review
  publication-title: Bull World Health Organ
– volume: 29
  start-page: 2479
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0006
  article-title: Predicting the extinction of HIV-2 in rural Guinea-Bissau
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000000844
– volume: 112
  start-page: E1480
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0037
  article-title: Replicative fitness of transmitted HIV-1 drives acute immune activation, proviral load in memory CD4+ T cells, and disease progression
  publication-title: Proc Natl Acad Sci USA
  doi: 10.1073/pnas.1421607112
– volume: 50
  start-page: 411
  year: 1992
  ident: 2022021406245795000_cei13280-bib-0061
  article-title: Interethnic genetic differentiation in Africa: HLA class I antigens in The Gambia
  publication-title: Am J Hum Genet
– volume: 25
  start-page: 2167
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0099
  article-title: Mortality and immunovirological outcomes on antiretroviral therapy in HIV-1 and HIV-2-infected individuals in The Gambia
  publication-title: AIDS
  doi: 10.1097/QAD.0b013e32834c4adb
– volume: 13
  start-page: e0191709
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0109
  article-title: Editing of the human TRIM5 gene to introduce mutations with the potential to inhibit HIV-1.
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0191709
– volume: 69
  start-page: 355
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0098
  article-title: Gender differences in adherence and response to antiretroviral treatment in the Stratall trial in rural district hospitals in Cameroon
  publication-title: JAIDS J Acquir Immune Defic Syndr
  doi: 10.1097/QAI.0000000000000604
– volume: 45
  start-page: 2232
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0055
  article-title: The presence of prolines in the flanking region of an immunodominant HIV-2 gag epitope influences the quality and quantity of the epitope generated
  publication-title: Eur J Immunol
  doi: 10.1002/eji.201545451
– volume: 93
  start-page: 889
  issue: Pt 4
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0002
  article-title: Phylogeographical footprint of colonial history in the global dispersal of human immunodeficiency virus type 2 group A
  publication-title: J Gen Virol
  doi: 10.1099/vir.0.038638-0
– volume: 69
  start-page: 489
  year: 2017
  ident: 2022021406245795000_cei13280-bib-0060
  article-title: Host genetic variation and HIV disease: from mapping to mechanism
  publication-title: Immunogenetics
  doi: 10.1007/s00251-017-1000-z
– volume: 195
  start-page: 726
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0044
  article-title: Long-term intrapatient viral evolution during HIV-2 infection
  publication-title: J Infect Dis
  doi: 10.1086/511308
– volume: 12
  start-page: 1365
  year: 2006
  ident: 2022021406245795000_cei13280-bib-0087
  article-title: Microbial translocation is a cause of systemic immune activation in chronic HIV infection
  publication-title: Nat Med
  doi: 10.1038/nm1511
– volume: 8
  start-page: 319
  year: 2002
  ident: 2022021406245795000_cei13280-bib-0084
  article-title: CD4+ T-cell depletion in HIV infection: are we closer to understanding the cause?
  publication-title: Nat Med
  doi: 10.1038/nm0402-319
– volume: 197
  start-page: 126
  year: 2008
  ident: 2022021406245795000_cei13280-bib-0106
  article-title: Relationship between T cell activation and CD4+ t cell count in HIV-seropositive individuals with undetectable plasma HIV RNA levels in the absence of therapy
  publication-title: J Infect Dis
  doi: 10.1086/524143
– volume: 85
  start-page: 2429
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0072
  article-title: Cell-associated viral burden provides evidence of ongoing viral replication in aviremic HIV-2-infected patients
  publication-title: J Virol
  doi: 10.1128/JVI.01921-10
– volume: 40
  start-page: 1963
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0078
  article-title: Highly avid, oligoclonal, early-differentiated antigen-specific CD8+ T cells in chronic HIV-2 infection
  publication-title: Eur J Immunol
  doi: 10.1002/eji.200940295
– volume: 19
  start-page: 286
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0017
  article-title: Two-stepping through time: mammals and viruses
  publication-title: Trends Microbiol
  doi: 10.1016/j.tim.2011.03.006
– volume: 236
  start-page: 219
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0071
  article-title: The PD-1 pathway in tolerance and autoimmunity
  publication-title: Immunol Rev
  doi: 10.1111/j.1600-065X.2010.00923.x
– volume: 121
  start-page: 4330
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0080
  article-title: Correlates of T-cell-mediated viral control and phenotype of CD8+ T cells in HIV-2, a naturally contained human retroviral infection
  publication-title: Blood
  doi: 10.1182/blood-2012-12-472787
– volume: 6
  start-page: 854
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0004
  article-title: Absence of routine molecular testing and prevalence of HIV-2 infection in regions hardest-hit by HIV infection
  publication-title: J Infect Dev Ctries
  doi: 10.3855/jidc.2298
– volume: 199
  start-page: 1657
  year: 2009
  ident: 2022021406245795000_cei13280-bib-0030
  article-title: Human TRIM5α expression levels and reduced susceptibility to HIV-1 infection
  publication-title: J Infect Dis
  doi: 10.1086/598861
– volume: 233
  start-page: 343
  year: 1986
  ident: 2022021406245795000_cei13280-bib-0001
  article-title: Isolation of a new human retrovirus from West African patients with AIDS
  publication-title: Science
  doi: 10.1126/science.2425430
– volume: 467
  start-page: 214
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0035
  article-title: A cryptic sensor for HIV-1 activates antiviral innate immunity in dendritic cells
  publication-title: Nature
  doi: 10.1038/nature09337
– volume: 17
  start-page: 2593
  year: 2003
  ident: 2022021406245795000_cei13280-bib-0104
  article-title: Factors associated with clinical progression in HIV-2 infected-patients: the French ANRS cohort
  publication-title: AIDS
  doi: 10.1097/00002030-200312050-00006
– volume: 353
  start-page: 144
  year: 2006
  ident: 2022021406245795000_cei13280-bib-0041
  article-title: In vitro replication capacity of HIV-2 variants from long-term aviremic individuals
  publication-title: Virology
  doi: 10.1016/j.virol.2006.05.029
– volume: 345
  start-page: 1254031-13
  year: 2014
  ident: 2022021406245795000_cei13280-bib-0097
  article-title: Selection bias at the heterosexual HIV-1 transmission bottleneck
  publication-title: Science
  doi: 10.1126/science.1254031
– volume: 21
  start-page: 2015
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0029
  article-title: The presence of the Trim5α escape mutation H87Q in the capsid of late stage HIV-1 variants is preceded by a prolonged asymptomatic infection phase
  publication-title: AIDS
  doi: 10.1097/QAD.0b013e3282effa87
– volume: 21
  start-page: 253
  year: 2016
  ident: 2022021406245795000_cei13280-bib-0090
  article-title: Differential effects of sex in a West African cohort of HIV-1, HIV-2 and HIV-1/2 dually infected patients: men are worse off
  publication-title: Trop Med Int Heal
  doi: 10.1111/tmi.12646
– volume: 200
  start-page: 1714
  year: 2009
  ident: 2022021406245795000_cei13280-bib-0011
  article-title: Clinical outcomes of elite controllers, viremic controllers, and long-term nonprogressors in the US department of defense HIV natural history study
  publication-title: J Infect Dis
  doi: 10.1086/646609
– volume: 8
  start-page: e1003041
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0038
  article-title: Role of transmitted Gag CTL polymorphisms in defining replicative capacity and early HIV-1 pathogenesis
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.1003041
– volume: 7
  start-page: 46
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0007
  article-title: Undetectable plasma viral load predicts normal survival in HIV-2-infected people in a West African village
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-7-46
– volume: 13
  start-page: 46
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0077
  article-title: CD8+ T-cell responses to different HIV proteins have discordant associations with viral load
  publication-title: Nat Med
  doi: 10.1038/nm1520
– volume: 89
  start-page: 2233
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0031
  article-title: TRIM5α restriction affects clinical outcome and disease progression in simian immunodeficiency virus-infected rhesus macaques.
  publication-title: J Virol
  doi: 10.1128/JVI.02978-14
– volume: 12
  start-page: e0170893
  year: 2017
  ident: 2022021406245795000_cei13280-bib-0091
  article-title: Adherence to antiretroviral therapy (ART) in Yaoundé-Cameroon: association with opportunistic infections, depression, art regimen and side effects.
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0170893
– volume: 4
  start-page: e18
  year: 2008
  ident: 2022021406245795000_cei13280-bib-0028
  article-title: The Effect of Trim5 polymorphisms on the clinical course of HIV-1 infection
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.0040018
– volume: 82
  start-page: 7243
  year: 2008
  ident: 2022021406245795000_cei13280-bib-0016
  article-title: Rhesus macaque TRIM5 alleles have divergent antiretroviral specificities
  publication-title: J Virol
  doi: 10.1128/JVI.00307-08
– volume: 92
  start-page: e00001
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0049
  article-title: HIV-1 activation of innate immunity depends strongly on the intracellular level of TREX1 and sensing of incomplete reverse transcription products
  publication-title: J Virol
  doi: 10.1128/JVI.00001-18
– volume: 9
  start-page: e1001304
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0092
  article-title: Gender differences in survival among adult patients starting antiretroviral therapy in South Africa: a multicentre cohort study.
  publication-title: PLOS Med
  doi: 10.1371/journal.pmed.1001304
– volume: 29
  start-page: 1733
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0033
  article-title: Impact of TRIM5α in vivo
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000000812
– volume: 10
  year: 2019
  ident: 2022021406245795000_cei13280-bib-0046
  article-title: Low postseroconversion CD4 + T-cell level is associated with faster disease progression and higher viral evolutionary rate in HIV-2 infection.
  publication-title: MBio
  doi: 10.1128/mBio.01245-18
– volume: 15
  start-page: 955
  year: 2009
  ident: 2022021406245795000_cei13280-bib-0096
  article-title: Sex differences in the Toll-like receptor-mediated response of plasmacytoid dendritic cells to HIV-1
  publication-title: Nat Med
  doi: 10.1038/nm.2004
– volume: 441
  start-page: 162
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0027
  article-title: Susceptibility and adaptation to human TRIM5α alleles at positive selected sites in HIV-1 capsid
  publication-title: Virology
  doi: 10.1016/j.virol.2013.03.021
– volume: 344
  start-page: 720
  year: 2001
  ident: 2022021406245795000_cei13280-bib-0095
  article-title: Initial plasma HIV-1 RNA levels and progression to AIDS in women and men
  publication-title: N Engl J Med
  doi: 10.1056/NEJM200103083441003
– volume: 209
  start-page: S86
  issue: Suppl 3
  year: 2014
  ident: 2022021406245795000_cei13280-bib-0094
  article-title: Sex-based differences in HIV type 1 pathogenesis
  publication-title: J Infect Dis
  doi: 10.1093/infdis/jiu175
– start-page: JVI.01541-17
  year: 2017
  ident: 2022021406245795000_cei13280-bib-0019
  article-title: The three-fold axis of the HIV-1 capsid lattice is the species-specific binding interface for TRIM5α
  publication-title: J Virol
– volume: 410
  start-page: 980
  year: 2001
  ident: 2022021406245795000_cei13280-bib-0074
  article-title: Cellular immune responses to HIV
  publication-title: Nature
  doi: 10.1038/35073658
– volume: 23
  start-page: 221
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0009
  article-title: Comparing HIV-1 and HIV-2 infection: lessons for viral immunopathogenesis
  publication-title: Rev Med Virol
  doi: 10.1002/rmv.1739
– volume: 3
  start-page: 54
  year: 2006
  ident: 2022021406245795000_cei13280-bib-0026
  article-title: Role of common human TRIM5alpha variants in HIV-1 disease progression
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-3-54
– volume: 16
  start-page: 1775
  year: 2002
  ident: 2022021406245795000_cei13280-bib-0012
  article-title: Mortality of HIV-1, HIV-2 and HIV-1/HIV-2 dually infected patients in a clinic-based cohort in The Gambia
  publication-title: AIDS
  doi: 10.1097/00002030-200209060-00010
– volume-title: Diversity and evolution of primate lentiviruses
  ident: 2022021406245795000_cei13280-bib-0036
– volume: 10
  start-page: 25
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0024
  article-title: The V86M mutation in HIV-1 capsid confers resistance to TRIM5α by abrogation of cyclophilin a-dependent restriction and enhancement of viral nuclear import
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-10-25
– volume: 6
  start-page: e22779
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0057
  article-title: A single amino acid of human immunodeficiency virus type 2 capsid protein affects conformation of two external loops and viral sensitivity to TRIM5α.
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0022779
– volume: 1
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0059
  article-title: HLA-associated polymorphisms in the HIV-2 capsid highlight key differences between HIV-1 and HIV-2 immune adaptation
  publication-title: AIDS
– volume: 7
  start-page: e1002439
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0053
  article-title: HIV-1 capsid–cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.1002439
– volume: 9
  start-page: e1003461
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0108
  article-title: Extreme genetic fragility of the HIV-1 capsid
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.1003461
– volume: 347
  start-page: 1573
  year: 1996
  ident: 2022021406245795000_cei13280-bib-0100
  article-title: Importance of age at infection with HIV-1 for survival and development of AIDS in UK haemophilia population. UK Haemophilia Centre Directors’ Organisation
  publication-title: Lancet
  doi: 10.1016/S0140-6736(96)91073-9
– volume: 90
  start-page: 7579
  year: 2016
  ident: 2022021406245795000_cei13280-bib-0051
  article-title: Changes in HIV-1 capsid stability induced by common cytotoxic-T-lymphocyte-driven viral sequence mutations
  publication-title: J Virol
  doi: 10.1128/JVI.00867-16
– volume: 7
  start-page: 45214
  year: 2017
  ident: 2022021406245795000_cei13280-bib-0022
  article-title: Cyclophilins and nucleoporins are required for infection mediated by capsids from circulating HIV-2 primary isolates
  publication-title: Sci Rep
  doi: 10.1038/srep45214
– volume: 117
  start-page: 3067
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0079
  article-title: Robust Gag-specific T cell responses characterize viremia control in HIV-2 infection
  publication-title: J Clin Invest
  doi: 10.1172/JCI32380
– volume: 427
  start-page: 848
  year: 2004
  ident: 2022021406245795000_cei13280-bib-0020
  article-title: The cytoplasmic body component TRIM5α restricts HIV-1 infection in Old World monkeys
  publication-title: Nature
  doi: 10.1038/nature02343
– volume: 5
  start-page: 1
  ident: 2022021406245795000_cei13280-bib-0063
  article-title: Associations between MHC class I and susceptibility to HIV-2 disease progression
  publication-title: J Hum Virol
– volume: 82
  start-page: 9795
  year: 2008
  ident: 2022021406245795000_cei13280-bib-0070
  article-title: Gag-specific CD4+ T-cell frequency is inversely correlated with proviral load and directly correlated with immune activation in infection with human immunodeficiency virus type 2 (HIV-2) but not HIV-1
  publication-title: J Virol
  doi: 10.1128/JVI.01217-08
– volume: 10
  start-page: 1585
  year: 1996
  ident: 2022021406245795000_cei13280-bib-0102
  article-title: Age of wife as a major determinant of male-to-female transmission of HIV-2 infection: a community study from rural West Africa
  publication-title: AIDS
  doi: 10.1097/00002030-199611000-00019
– volume: 349
  start-page: 911
  year: 1997
  ident: 2022021406245795000_cei13280-bib-0103
  article-title: 9-year HIV-2-associated mortality in an urban community in Bissau, west Africa
  publication-title: Lancet
  doi: 10.1016/S0140-6736(96)04402-9
– volume: 56
  start-page: 1
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0065
  article-title: CD4 intragenic SNPs associate with HIV-2 plasma viral load and CD4 count in a community-based study from Guinea-Bissau, West Africa
  publication-title: J Acquir Immune Defic Syndr
  doi: 10.1097/QAI.0b013e3181f638ed
– volume: 26
  start-page: 951
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0101
  article-title: Effect of age on immunological response in the first year of antiretroviral therapy in HIV-1-infected adults in West Africa
  publication-title: AIDS
  doi: 10.1097/QAD.0b013e3283528ad4
– volume: 85
  start-page: 7828
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0015
  article-title: Modulation of TRIM5alpha activity in human cells by alternatively spliced TRIM5 isoforms
  publication-title: J Virol
  doi: 10.1128/JVI.00648-11
– volume: 201
  start-page: 1150
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0088
  article-title: Microbial translocation correlates with the severity of both HIV-1 and HIV-2 infections
  publication-title: J Infect Dis
  doi: 10.1086/651430
– volume: 417
  start-page: 95
  year: 2002
  ident: 2022021406245795000_cei13280-bib-0066
  article-title: HIV preferentially infects HIV-specific CD4+ T cells
  publication-title: Nature
  doi: 10.1038/417095a
– volume: 207
  start-page: 1730
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0089
  article-title: Monocyte and myeloid dendritic cell activation occurs throughout HIV type 2 infection, an attenuated form of HIV disease
  publication-title: J Infect Dis
  doi: 10.1093/infdis/jit085
– volume: 1
  year: 2016
  ident: 2022021406245795000_cei13280-bib-0008
  article-title: Mortality and survival patterns of people living with HIV-2
  publication-title: Curr Opin HIV AIDS
– year: 2018
  ident: 2022021406245795000_cei13280-bib-0110
  article-title: Evolved Cas9 variants with broad PAM compatibility and high DNA specificity
  publication-title: Nature
  doi: 10.1038/nature26155
– volume: 32
  start-page: 1193
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0005
  article-title: HIV-2 continues to decrease, whereas HIV-1 is stabilizing in Guinea-Bissau
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000001827
– volume: 10
  start-page: 50
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0058
  article-title: High level of susceptibility to human TRIM5α conferred by HIV-2 capsid sequences
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-10-50
– volume: 30
  start-page: 631
  year: 2009
  ident: 2022021406245795000_cei13280-bib-0076
  article-title: Elucidating the elite: mechanisms of control in HIV-1 infection
  publication-title: Trends Pharmacol Sci
  doi: 10.1016/j.tips.2009.09.005
– volume: 208
  start-page: 830
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0093
  article-title: Higher expression of several interferon-stimulated genes in HIV-1-infected females after adjusting for the level of viral replication
  publication-title: J Infect Dis
  doi: 10.1093/infdis/jit262
– volume: 91
  start-page: e01806
  year: 2017
  ident: 2022021406245795000_cei13280-bib-0039
  article-title: Replication capacity of viruses from acute infection drives HIV-1 disease progression.
  publication-title: J Virol
  doi: 10.1128/JVI.01806-16
– volume: 32
  start-page: 721
  year: 2018
  ident: 2022021406245795000_cei13280-bib-0064
  article-title: The influence of human leukocyte antigen-types on disease progression among HIV-2 infected patients in Guinea-Bissau
  publication-title: AIDS
  doi: 10.1097/QAD.0000000000001758
– volume: 13
  start-page: 403
  year: 2015
  ident: 2022021406245795000_cei13280-bib-0013
  article-title: HIV-1 and interferons: who’s interfering with whom?
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro3449
– volume: 79
  start-page: 8979
  year: 2005
  ident: 2022021406245795000_cei13280-bib-0040
  article-title: The replicative fitness of primary human immunodeficiency virus type 1 (HIV-1) group M, HIV-1 group O, and HIV-2 isolates
  publication-title: J Virol
  doi: 10.1128/JVI.79.14.8979-8990.2005
– volume: 20
  start-page: 29
  year: 2006
  ident: 2022021406245795000_cei13280-bib-0068
  article-title: Proliferative, IFNgamma and IL-2-producing T-cell responses to HIV-2 in untreated HIV-2 infection
  publication-title: AIDS
  doi: 10.1097/01.aids.0000198077.30421.bf
– volume: 4
  start-page: e16
  year: 2008
  ident: 2022021406245795000_cei13280-bib-0014
  article-title: E3 ligases interfere with early and late stages of the retroviral life cycle
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.0040016
– volume: 26
  start-page: 1065
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0073
  article-title: PD-1 and its ligand PD-L1 are progressively up-regulated on CD4 and CD8 T-cells in HIV-2 infection irrespective of the presence of viremia
  publication-title: AIDS
  doi: 10.1097/QAD.0b013e32835374db
– volume: 39
  start-page: 1132
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0048
  article-title: The capsids of HIV-1 and HIV-2 determine immune detection of the viral cDNA by the innate sensor cGAS in dendritic Cells
  publication-title: Immunity
  doi: 10.1016/j.immuni.2013.11.002
– volume: 472
  start-page: 361
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0025
  article-title: TRIM5 is an innate immune sensor for the retrovirus capsid lattice
  publication-title: Nature
  doi: 10.1038/nature09976
– volume: 3
  start-page: 0282
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0045
  article-title: Synonymous substitution rates predict HIV disease progression as a result of underlying replication dynamics
  publication-title: PLOS Comput Biol
  doi: 10.1371/journal.pcbi.0030029
– volume: 3
  start-page: e197
  year: 2007
  ident: 2022021406245795000_cei13280-bib-0018
  article-title: Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals
  publication-title: PLOS Pathog
  doi: 10.1371/journal.ppat.0030197
– volume: 472
  start-page: 361
  year: 2011
  ident: 2022021406245795000_cei13280-bib-0105
  article-title: TRIM5 is an innate immune sensor for the retrovirus capsid lattice
  publication-title: Nature
  doi: 10.1038/nature09976
– volume: 326
  start-page: 662
  year: 1987
  ident: 2022021406245795000_cei13280-bib-0034
  article-title: Genome organization and transactivation of the human immunodeficiency virus type 2
  publication-title: Nature
  doi: 10.1038/326662a0
– volume: 38
  start-page: 350
  year: 2008
  ident: 2022021406245795000_cei13280-bib-0069
  article-title: Polyfunctional T cell responses are a hallmark of HIV-2 infection
  publication-title: Eur J Immunol
  doi: 10.1002/eji.200737768
– volume: 354
  start-page: 453
  year: 1991
  ident: 2022021406245795000_cei13280-bib-0075
  article-title: Human immunodeficiency virus genetic variation that can escape cytotoxic T cell recognition
  publication-title: Nature
  doi: 10.1038/354453a0
– volume: 7
  start-page: 1
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0085
  article-title: Are plasma biomarkers of immune activation predictive of HIV progression: a longitudinal comparison and analyses in HIV-1 and HIV-2 infections?
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0044411
– volume: 367
  start-page: 224
  year: 2012
  ident: 2022021406245795000_cei13280-bib-0042
  article-title: Inhibition of HIV-1 disease progression by contemporaneous HIV-2 infection
  publication-title: N Engl J Med
  doi: 10.1056/NEJMoa1113244
– volume: 84
  start-page: 8202
  year: 2010
  ident: 2022021406245795000_cei13280-bib-0062
  article-title: Influence of HLA class I and HLA-KIR compound genotypes on HIV-2 infection and markers of disease progression in a Manjako community in West Africa
  publication-title: J Virol
  doi: 10.1128/JVI.00116-10
– volume: 90
  start-page: 8552
  year: 2016
  ident: 2022021406245795000_cei13280-bib-0032
  article-title: Nonhuman TRIM5 variants enhance recognition of HIV-1-infected cells by CD8+ T cells.
  publication-title: J Virol
  doi: 10.1128/JVI.00819-16
– volume: 27
  start-page: 125
  year: 2013
  ident: 2022021406245795000_cei13280-bib-0047
  article-title: Population dynamics of HIV-2 in rural West Africa: comparison with HIV-1 and ongoing transmission at the heart of the epidemic
  publication-title: AIDS
  doi: 10.1097/QAD.0b013e32835ab12c
– volume: mi201744
  year: 2017
  ident: 2022021406245795000_cei13280-bib-0082
  article-title: HIV-2 infection is associated with preserved GALT homeostasis and epithelial integrity despite ongoing mucosal viral replication
  publication-title: Mucosal Immunol
– year: 2018
  ident: 2022021406245795000_cei13280-bib-0010
  article-title: Long-term follow-up of HIV-2-related AIDS and mortality in Guinea-Bissau: a prospective open cohort study
  publication-title: Lancet HIV
– volume: 79
  start-page: 11580
  year: 2005
  ident: 2022021406245795000_cei13280-bib-0021
  article-title: Differential restriction of human immunodeficiency virus type 2 and simian immunodeficiency virus SIVmac by TRIM5 alleles
  publication-title: J Virol
  doi: 10.1128/JVI.79.18.11580-11587.2005
SSID ssj0006662
Score 2.3144515
SecondaryResourceType review_article
Snippet Summary HIV‐2 is thought to have entered the human population in the 1930s through cross‐species transmission of SIV from sooty mangabeys in West Africa....
HIV-2 is thought to have entered the human population in the 1930s through cross-species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV-1,...
HIV‐2 is thought to have entered the human population in the 1930s through cross‐species transmission of SIV from sooty mangabeys in West Africa. Unlike HIV‐1,...
SourceID pubmedcentral
proquest
pubmed
crossref
wiley
SourceType Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 305
SubjectTerms Acquired immune deficiency syndrome
Adult
Africa, Western - epidemiology
AIDS
Animals
Antiretroviral therapy
Antiviral Restriction Factors
Asymptomatic Diseases
capsid
Capsid Proteins - genetics
Capsid Proteins - metabolism
Cercocebus atys
Disease Progression
Endemic Diseases
HIV
HIV Infections - epidemiology
HIV Infections - mortality
HIV-1 - physiology
HIV-2 - physiology
HIV‐2
Human immunodeficiency virus
Humans
long term non‐progression
Pandemics
Patients
Review
Survival Analysis
TRIM5
Tripartite Motif Proteins - genetics
Tripartite Motif Proteins - metabolism
Ubiquitin-Protein Ligases - genetics
Ubiquitin-Protein Ligases - metabolism
Virulence Factors
Title Delayed disease progression in HIV‐2: the importance of TRIM5α and the retroviral capsid
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fcei.13280
https://www.ncbi.nlm.nih.gov/pubmed/30773620
https://www.proquest.com/docview/2224222299
https://www.proquest.com/docview/2183182237
https://pubmed.ncbi.nlm.nih.gov/PMC6514420
Volume 196
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3NTuMwEB4hJBCX5W-BQkEG7YFLKmI7f3BCBdQilQPLIiRWimzHERUlRdAe4MQj8Cq8CA_BkzB2fqDASmhviTxObGfG8409-QzwKxQ-4mLmO-hapMOloA7eS0eGOgxd4aUyMeuQnSO_9YcfnnlnY7BT_guT80NUC27GMux8bQxcyNt3Rq50t4GhVGjidZf5hjd_7_iNOgphOS1PUUOXyAtWIZPFU9Uc9UWfAObnPMn3-NU6oINp-Fs2Pc87uWwMB7Kh7j-wOv5n32bgRwFMyW6uSbMwprM5mMiPqrybg8lOsQk_D-d7uifudEKKzR1ic7xyfg_SzUirffry8Ei3CWJL0r2yAB9Vi_RTcnLc7njPT0RkiS290QOzpIG9Jkpco2H8hN8H-yfNllOc0eAoztmWEwlfuC7ztkSQCldrnbpewkMM6vyQSiUjnkYSQ0CKkVnKJZeB9FXCWWKY5ChbgPGsn-klIJxpGiBeSHmkESQxESkZpgIRqCskTVQNNstvFauCvtycotGLyzAGBy22g1aDjUr0Oufs-EqoXn7wuDDb2xjBklkSQxddg_WqGA3O7KKITPeHKIOTIAZllAU1WMz1o3oLTpgBIgJ8eDCiOZWAIfMeLcm6F5bU20fkyk3NTasY_2543Nxv24vl74uuwBQCvShPcavD-OBmqFcRTA3kmrWaV9f4GpE
linkProvider Wiley-Blackwell
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3JTuQwEC0hRgxzYV-abTyIA5e0Oo6zIS6IRd1Ac4AGISEU2Y6jaQFpxHQf4MQn8Cv8CB_Bl1B2FugBJMQtkctZnCrXq3LlGWAl4B7iYsez0LUIiwlOLTwXlghUENjcTUSs85DNA69-zHZP3dMBWC_-hcn4IcqEm7YMM19rA9cJ6TdWLlW7irFUgAH7D4ZAQ4deW4ev5FEIzGmxjxo6RZbzCuk6nrJrvzd6BzHfV0q-RbDGBe2Mwnnx8FnlyUW11xVVefcfr-N3324MRnJsSjYyZRqHAZVOwFC2W-XtBPxs5uvwk3C2pS75rYpJvr5DTJlXRvFB2impN06e7x_oGkF4SdpXBuOjdpFOQlqHjab79Eh4GpvWG9XVWQ18bSL5NdrGFBztbLc261a-TYMlGXNqVsg9btuOW-N-wm2lVGK7MQswrvMCKqQIWRIKjAIpBmcJE0z4wpMxc2JNJkedaRhMO6maBcIcRX2EDAkLFeIkh4dSBAlHEGpzQWNZgdXiY0UyZzDXG2lcRkUkg4MWmUGrwHIpep3RdnwktFB88Si33H8R4iWdFUMvXYE_ZTPanF5I4anq9FAG50GMy6jjV2AmU5DyLjhn-ggK8OJ-n-qUAprPu78lbf81vN4egleme64azfj8waPN7YY5mPu66G8Yrrea-9F-42BvHn4h7guzircFGOze9NQiYquuWDIm9AJz7x6w
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3bTtwwEB0hqiJeKOXSbrnUrXjgJSviODd4QsBql3YR4iYkkCLbscUKyK7o7gM88Qn8Cj_CR_RLOnYuZblIiLdEHie2M-M5Y0-OAZYiHiAu9gIHXYtwmODUwXvhiEhFkct9LVKzDtneCZqHbPvYPx6BtfJfmJwfolpwM5Zh52tj4L1UPzJyqTp1DKUijNc_sACRhEFEe_-5oxCX0_IYNfSJrKAVMmk8VdVhZ_QMYT5PlHwMYK0HanyC07LteeLJeX3QF3V584TW8Z2dm4SJApmS9VyVPsOIyqbgY35W5fUUjLWLXfhpONlUF_xapaTY3SE2ySsn-CCdjDRbR39v7-gqQXBJOpcW4aNuka4mB3uttv9wT3iW2tIr1TdrGthrInkPLWMG9htbBxtNpzikwZGMeStOzAPuup6_wkPNXaWUdv2URRjVBREVUsRMxwJjQIqhmWaCiVAEMmVeaqjkqDcLo1k3U1-BME_REAGDZrFClOTxWIpIc4SgLhc0lTVYLr9VIgv-cnOMxkVSxjE4aIkdtBr8rER7OWnHS0Lz5QdPCrv9kyBaMmti6KNr8KMqRosz2yg8U90ByuAsiFEZ9cIafMn1o3oLzpghQgJ8eDikOZWAYfMeLsk6Z5bVO0DoykzNZasYrzc82dhq2Ytvbxf9DmO7m43kd2vn1xyMI-iL83S3eRjtXw3UAgKrvli0BvQPBe4dXw
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Delayed+disease+progression+in+HIV%E2%80%902%3A+the+importance+of+TRIM5%CE%B1+and+the+retroviral+capsid&rft.jtitle=Clinical+and+experimental+immunology&rft.au=Boswell%2C+M.+T.&rft.au=Rowland%E2%80%90Jones%2C+S.+L.&rft.date=2019-06-01&rft.pub=John+Wiley+and+Sons+Inc&rft.issn=0009-9104&rft.eissn=1365-2249&rft.volume=196&rft.issue=3&rft.spage=305&rft.epage=317&rft_id=info:doi/10.1111%2Fcei.13280&rft_id=info%3Apmid%2F30773620&rft.externalDocID=PMC6514420
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0009-9104&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0009-9104&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0009-9104&client=summon