High nucleotide diversity and limited linkage disequilibrium in Helicoverpa armigera facilitates the detection of a selective sweep
Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints of 'selective sweeps'. To lay the foundation for future genome-wide scans for selective sweeps and inform genome-wide association st...
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| Published in | Heredity Vol. 115; no. 5; pp. 460 - 470 |
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| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Springer Nature B.V
01.11.2015
Nature Publishing Group |
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| Online Access | Get full text |
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| Abstract | Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints of 'selective sweeps'. To lay the foundation for future genome-wide scans for selective sweeps and inform genome-wide association study designs, we set out to characterize some of the baseline population genomic parameters of one of the most damaging insect pests in agriculture worldwide, Helicoverpa armigera. To this end, we surveyed nine Z-linked loci in three Australian H. armigera populations. We find that estimates of π are in the higher range among other insects and linkage disequilibrium decays over short distances. One of the surveyed loci, a cytochrome P450, shows an unusual haplotype configuration with a divergent allele at high frequency that led us to investigate the possibility of an adaptive introgression around this locus. |
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| AbstractList | Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints of 'selective sweeps'. To lay the foundation for future genome-wide scans for selective sweeps and inform genome-wide association study designs, we set out to characterize some of the baseline population genomic parameters of one of the most damaging insect pests in agriculture worldwide, Helicoverpa armigera. To this end, we surveyed nine Z-linked loci in three Australian H. armigera populations. We find that estimates of π are in the higher range among other insects and linkage disequilibrium decays over short distances. One of the surveyed loci, a cytochrome P450, shows an unusual haplotype configuration with a divergent allele at high frequency that led us to investigate the possibility of an adaptive introgression around this locus. Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints of ‘selective sweeps'. To lay the foundation for future genome-wide scans for selective sweeps and inform genome-wide association study designs, we set out to characterize some of the baseline population genomic parameters of one of the most damaging insect pests in agriculture worldwide, Helicoverpa armigera . To this end, we surveyed nine Z-linked loci in three Australian H. armigera populations. We find that estimates of π are in the higher range among other insects and linkage disequilibrium decays over short distances. One of the surveyed loci, a cytochrome P450, shows an unusual haplotype configuration with a divergent allele at high frequency that led us to investigate the possibility of an adaptive introgression around this locus. Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints of 'selective sweeps'. To lay the foundation for future genome-wide scans for selective sweeps and inform genome-wide association study designs, we set out to characterize some of the baseline population genomic parameters of one of the most damaging insect pests in agriculture worldwide, Helicoverpa armigera. To this end, we surveyed nine Z-linked loci in three Australian H. armigera populations. We find that estimates of pi are in the higher range among other insects and linkage disequilibrium decays over short distances. One of the surveyed loci, a cytochrome P450, shows an unusual haplotype configuration with a divergent allele at high frequency that led us to investigate the possibility of an adaptive introgression around this locus. |
| Author | Oakeshott, J G Downes, S Parker, T Robin, C Song, S V |
| Author_xml | – sequence: 1 givenname: S V surname: Song fullname: Song, S V organization: Department of Genetics, University of Melbourne and Bio21 Institute, Melbourne, Victoria, Australia – sequence: 2 givenname: S surname: Downes fullname: Downes, S organization: Agriculture Flagship, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Narrabri, New South Wales, Australia – sequence: 3 givenname: T surname: Parker fullname: Parker, T organization: Agriculture Flagship, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Narrabri, New South Wales, Australia – sequence: 4 givenname: J G surname: Oakeshott fullname: Oakeshott, J G organization: Land and Water Flagship, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australian Capital Territory, Australia – sequence: 5 givenname: C surname: Robin fullname: Robin, C organization: Department of Genetics, University of Melbourne and Bio21 Institute, Melbourne, Victoria, Australia |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26174024$$D View this record in MEDLINE/PubMed |
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| Snippet | Insecticides impose extreme selective pressures on populations of target pests and so insecticide resistance loci of these species may provide the footprints... |
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| SubjectTerms | Agriculture Animal populations Animals Australia Cytochrome Cytochrome P-450 Enzyme System - genetics Female Gene loci Genes, Insect Genetic Loci Genetic Variation Genetics, Population Genomics Haplotypes Helicoverpa armigera Insecticides Insects Linkage Disequilibrium Male Models, Genetic Molecular Sequence Data Moths - genetics Original Pests Selection, Genetic Sequence Analysis, DNA |
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| Title | High nucleotide diversity and limited linkage disequilibrium in Helicoverpa armigera facilitates the detection of a selective sweep |
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