Polyadenylation of ribosomal RNA in human cells
The addition of poly(A)-tails to RNA is a process common to almost all organisms. In eukaryotes, stable poly(A)-tails, important for mRNA stability and translation initiation, are added to the 3′ ends of most nuclear-encoded mRNAs, but not to rRNAs. Contrarily, in prokaryotes and organelles, polyade...
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Published in | Nucleic acids research Vol. 34; no. 10; pp. 2966 - 2975 |
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Main Authors | , , , |
Format | Journal Article |
Language | English |
Published |
England
Oxford University Press
01.01.2006
Oxford Publishing Limited (England) |
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Abstract | The addition of poly(A)-tails to RNA is a process common to almost all organisms. In eukaryotes, stable poly(A)-tails, important for mRNA stability and translation initiation, are added to the 3′ ends of most nuclear-encoded mRNAs, but not to rRNAs. Contrarily, in prokaryotes and organelles, polyadenylation stimulates RNA degradation. Recently, polyadenylation of nuclear-encoded transcripts in yeast was reported to promote RNA degradation, demonstrating that polyadenylation can play a double-edged role for RNA of nuclear origin. Here we asked whether in human cells ribosomal RNA can undergo polyadenylation. Using both molecular and bioinformatic approaches, we detected non-abundant polyadenylated transcripts of the 18S and 28S rRNAs. Interestingly, many of the post-transcriptionally added tails were composed of heteropolymeric poly(A)-rich sequences containing the other nucleotides in addition to adenosine. These polyadenylated RNA fragments are most likely degradation intermediates, as primer extension (PE) analysis revealed the presence of distal fragmented molecules, some of which matched the polyadenylation sites of the proximal cleavage products revealed by oligo(dT) and circled RT–PCR. These results suggest the presence of a mechanism to degrade ribosomal RNAs in human cells, that possibly initiates with endonucleolytic cleavages and involves the addition of poly(A) or poly(A)-rich tails to truncated transcripts, similar to that which operates in prokaryotes and organelles. |
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AbstractList | The addition of poly(A)-tails to RNA is a process common to almost all organisms. In eukaryotes, stable poly(A)-tails, important for mRNA stability and translation initiation, are added to the 3' ends of most nuclear-encoded mRNAs, but not to rRNAs. Contrarily, in prokaryotes and organelles, polyadenylation stimulates RNA degradation. Recently, polyadenylation of nuclear-encoded transcripts in yeast was reported to promote RNA degradation, demonstrating that polyadenylation can play a double-edged role for RNA of nuclear origin. Here we asked whether in human cells ribosomal RNA can undergo polyadenylation. Using both molecular and bioinformatic approaches, we detected non-abundant polyadenylated transcripts of the 18S and 28S rRNAs. Interestingly, many of the post-transcriptionally added tails were composed of heteropolymeric poly(A)-rich sequences containing the other nucleotides in addition to adenosine. These polyadenylated RNA fragments are most likely degradation intermediates, as primer extension (PE) analysis revealed the presence of distal fragmented molecules, some of which matched the polyadenylation sites of the proximal cleavage products revealed by oligo(dT) and circled RT-PCR. These results suggest the presence of a mechanism to degrade ribosomal RNAs in human cells, that possibly initiates with endonucleolytic cleavages and involves the addition of poly(A) or poly(A)-rich tails to truncated transcripts, similar to that which operates in prokaryotes and organelles. |
Author | Laufer, David Slomovic, Shimyn Schuster, Gadi Geiger, Dan |
Author_xml | – sequence: 1 givenname: Shimyn surname: Slomovic fullname: Slomovic, Shimyn – sequence: 2 givenname: David surname: Laufer fullname: Laufer, David organization: Department of Computer Science, Technion—Israel Institute of Technology Haifa 32000, Israel – sequence: 3 givenname: Dan surname: Geiger fullname: Geiger, Dan organization: Department of Computer Science, Technion—Israel Institute of Technology Haifa 32000, Israel – sequence: 4 givenname: Gadi surname: Schuster fullname: Schuster, Gadi organization: To whom correspondence should be addressed. Tel: 972 4 8293171; Fax: 972 4 8295587; Email: gadis@tx.technion.ac.il |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/16738135$$D View this record in MEDLINE/PubMed |
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SubjectTerms | Cell Line, Tumor Expressed Sequence Tags Humans Oligonucleotide Probes Poly A - analysis Polyadenylation Reverse Transcriptase Polymerase Chain Reaction RNA Stability RNA, Ribosomal - chemistry RNA, Ribosomal - metabolism RNA, Ribosomal, 18S - analysis RNA, Ribosomal, 18S - chemistry RNA, Ribosomal, 18S - metabolism RNA, Ribosomal, 28S - analysis RNA, Ribosomal, 28S - chemistry RNA, Ribosomal, 28S - metabolism |
Title | Polyadenylation of ribosomal RNA in human cells |
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