Genome‐wide SNPs confirm plumage polymorphism and hybridisation within a Cyornis flycatcher species complex

Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic revolution have produced numerous demonstrations of erroneous classifications that were based on labile morphological traits. We used thousan...

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Published inZoologica scripta Vol. 52; no. 1; pp. 1 - 16
Main Authors Ng, Elize Y. X., Li, Siqi, Zhang, Dezhi, Garg, Kritika M., Song, Gang, Martinez, Jonathan, Hung, Le Manh, Tu, Vuong Tan, Fuchs, Jérôme, Dong, Lu, Olsson, Urban, Huang, Yuan, Alström, Per, Rheindt, Frank E., Lei, Fumin
Format Journal Article
LanguageEnglish
Published Oslo Wiley Subscription Services, Inc 01.01.2023
Wiley
Subjects
adaptive radiation
cryptic diversity
Cyornis
ddRADseq
Divergence
evolution
Evolutionary Biology
Evolutionsbiologi
gene flow
Genes
Genomes
Genomics
Hybridization
introgression
Life Sciences
Light
limits
Morphology
multilocus phylogeny
passeriformes
phylogenetic-relationships
phylogenetics
Plumage
Polymorphism
sequence
Sibling species
Single-nucleotide polymorphism
species complex
Taxonomy
Zoology
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Abstract Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic revolution have produced numerous demonstrations of erroneous classifications that were based on labile morphological traits. We used thousands of genome‐wide markers to shed light on evolutionary dynamics in a confusing and taxonomically obscure group of Asian Cyornis flycatchers. Using genomic data, we corroborated recent findings based on three mitochrondrial and five nuclear genes that the two taxa hainanus and klossi which were previously treated as separate species (Cyornis hainanus and Cyornis rubeculoides klossi, respectively) are genomically homogeneous and form a single species, C. hainanus. We also uncovered a novel case of interbreeding between C. hainanus and a non‐sister species, C. glaucicomans, illustrating these flycatchers' ability to hybridise in marginal situations even after substantial times of divergence. Our study illustrates how genome‐wide loci can shed light on complicated taxonomic problems, resulting in a better integration of phenotypic and genotypic data.
AbstractList Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic revolution have produced numerous demonstrations of erroneous classifications that were based on labile morphological traits. We used thousands of genome‐wide markers to shed light on evolutionary dynamics in a confusing and taxonomically obscure group of Asian Cyornis flycatchers. Using genomic data, we corroborated recent findings based on three mitochrondrial and five nuclear genes that the two taxa hainanus and klossi which were previously treated as separate species (Cyornis hainanus and Cyornis rubeculoides klossi, respectively) are genomically homogeneous and form a single species, C. hainanus. We also uncovered a novel case of interbreeding between C. hainanus and a non‐sister species, C. glaucicomans, illustrating these flycatchers' ability to hybridise in marginal situations even after substantial times of divergence. Our study illustrates how genome‐wide loci can shed light on complicated taxonomic problems, resulting in a better integration of phenotypic and genotypic data.
Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic revolution have produced numerous demonstrations of erroneous classifications that were based on labile morphological traits. We used thousands of genome-wide markers to shed light on evolutionary dynamics in a confusing and taxonomically obscure group of Asian Cyornis flycatchers. Using genomic data, we corroborated recent findings based on three mitochrondrial and five nuclear genes that the two taxa hainanus and klossi which were previously treated as separate species ( Cyornis hainanus and Cyornis rubeculoides klossi , respectively) are genomically homogeneous and form a single species, C. hainanus . We also uncovered a novel case of interbreeding between C. hainanus and a non-sister species, C. glaucicomans , illustrating these flycatchers' ability to hybridise in marginal situations even after substantial times of divergence. Our study illustrates how genome-wide loci can shed light on complicated taxonomic problems, resulting in a better integration of phenotypic and genotypic data.
Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic revolution have produced numerous demonstrations of erroneous classifications that were based on labile morphological traits. We used thousands of genome‐wide markers to shed light on evolutionary dynamics in a confusing and taxonomically obscure group of Asian Cyornis flycatchers. Using genomic data, we corroborated recent findings based on three mitochrondrial and five nuclear genes that the two taxa hainanus and klossi which were previously treated as separate species ( Cyornis hainanus and Cyornis rubeculoides klossi , respectively) are genomically homogeneous and form a single species, C. hainanus . We also uncovered a novel case of interbreeding between C. hainanus and a non‐sister species, C. glaucicomans , illustrating these flycatchers' ability to hybridise in marginal situations even after substantial times of divergence. Our study illustrates how genome‐wide loci can shed light on complicated taxonomic problems, resulting in a better integration of phenotypic and genotypic data.
Author Tu, Vuong Tan
Song, Gang
Hung, Le Manh
Garg, Kritika M.
Martinez, Jonathan
Zhang, Dezhi
Li, Siqi
Lei, Fumin
Fuchs, Jérôme
Dong, Lu
Alström, Per
Olsson, Urban
Ng, Elize Y. X.
Huang, Yuan
Rheindt, Frank E.
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Snippet Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and – more recently – genomic...
Morphology has been a leading taxonomic guiding light to systematists for the last couple of hundred years. However, the genetic and - more recently - genomic...
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SubjectTerms adaptive radiation
cryptic diversity
Cyornis
ddRADseq
Divergence
evolution
Evolutionary Biology
Evolutionsbiologi
gene flow
Genes
Genomes
Genomics
Hybridization
introgression
Life Sciences
Light
limits
Morphology
multilocus phylogeny
passeriformes
phylogenetic-relationships
phylogenetics
Plumage
Polymorphism
sequence
Sibling species
Single-nucleotide polymorphism
species complex
Taxonomy
Zoology
Title Genome‐wide SNPs confirm plumage polymorphism and hybridisation within a Cyornis flycatcher species complex
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fzsc.12568
https://www.proquest.com/docview/2747933923
https://hal.science/hal-03787722
https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-497354
https://gup.ub.gu.se/publication/319492
Volume 52
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