National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge
The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate...
Saved in:
Published in | Omics (Larchmont, N.Y.) Vol. 10; no. 2; p. 185 |
---|---|
Main Authors | , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
United States
01.06.2006
|
Subjects | |
Online Access | Get more information |
Cover
Loading…
Abstract | The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create new software tools so that scientists can use ontologies to annotate and analyze biomedical data, (3) to provide a national resource for the ongoing evaluation, integration, and evolution of biomedical ontologies and associated tools and theories in the context of driving biomedical projects (DBPs), and (4) to disseminate the tools and resources of the Center and to identify, evaluate, and communicate best practices of ontology development to the biomedical community. Through the research activities within the Center, collaborations with the DBPs, and interactions with the biomedical community, our goal is to help scientists to work more effectively in the e-science paradigm, enhancing experiment design, experiment execution, data analysis, information synthesis, hypothesis generation and testing, and understand human disease. |
---|---|
AbstractList | The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create new software tools so that scientists can use ontologies to annotate and analyze biomedical data, (3) to provide a national resource for the ongoing evaluation, integration, and evolution of biomedical ontologies and associated tools and theories in the context of driving biomedical projects (DBPs), and (4) to disseminate the tools and resources of the Center and to identify, evaluate, and communicate best practices of ontology development to the biomedical community. Through the research activities within the Center, collaborations with the DBPs, and interactions with the biomedical community, our goal is to help scientists to work more effectively in the e-science paradigm, enhancing experiment design, experiment execution, data analysis, information synthesis, hypothesis generation and testing, and understand human disease. |
Author | Mungall, Chris J Storey, Margaret-Anne Noy, Natalya F Chute, Christopher G Misra, Sima Ashburner, Michael Westerfield, Monte Sim, Ida Smith, Barry Musen, Mark A Rubin, Daniel L Lewis, Suzanna E Solbrig, Harold Day-Richter, John |
Author_xml | – sequence: 1 givenname: Daniel L surname: Rubin fullname: Rubin, Daniel L email: rubin@smi.stanford.edu organization: Stanford Medical Informatics, Stanford University, Stanford, California 94305, USA. rubin@smi.stanford.edu – sequence: 2 givenname: Suzanna E surname: Lewis fullname: Lewis, Suzanna E – sequence: 3 givenname: Chris J surname: Mungall fullname: Mungall, Chris J – sequence: 4 givenname: Sima surname: Misra fullname: Misra, Sima – sequence: 5 givenname: Monte surname: Westerfield fullname: Westerfield, Monte – sequence: 6 givenname: Michael surname: Ashburner fullname: Ashburner, Michael – sequence: 7 givenname: Ida surname: Sim fullname: Sim, Ida – sequence: 8 givenname: Christopher G surname: Chute fullname: Chute, Christopher G – sequence: 9 givenname: Harold surname: Solbrig fullname: Solbrig, Harold – sequence: 10 givenname: Margaret-Anne surname: Storey fullname: Storey, Margaret-Anne – sequence: 11 givenname: Barry surname: Smith fullname: Smith, Barry – sequence: 12 givenname: John surname: Day-Richter fullname: Day-Richter, John – sequence: 13 givenname: Natalya F surname: Noy fullname: Noy, Natalya F – sequence: 14 givenname: Mark A surname: Musen fullname: Musen, Mark A |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/16901225$$D View this record in MEDLINE/PubMed |
BookMark | eNo1kMtOwzAQRb0oog9Ys0P-gYSxEzspO6goIFV0A-vKsSepIbUrxykqX0-AshrpXOno3pmSkfMOCblikDIo5zd-Z1MOINMfUIoRmTCRyYRnDMZk2nXvAJxJnp2TMZNzYJyLCTm8qGi9Uy1doIsYaO0Dvbd-h8bqga5d9K1vjrdUmYNy2rqGVqfYOqRxG3zfbGkXQ69jH9BQHxrl7Nevl_qadtoOaltbTT-c_2zRNHhBzmrVdnh5ujPytnx4XTwlq_Xj8-Juleg8h5jMc2BaVygVVAaglkKCAoFsIEVVoMkNH7aromSsUAJkUYm8xFLokjOdCT4j13_efV8NnTf7YHcqHDf_D-Df4iJf0Q |
CitedBy_id | crossref_primary_10_1186_s13326_017_0128_y crossref_primary_10_2964_jsik_ishi007 crossref_primary_10_2139_ssrn_3199113 crossref_primary_10_1002_wics_167 crossref_primary_10_2481_dsj_008_041 crossref_primary_10_1016_j_jtbi_2011_05_014 crossref_primary_10_1142_S1793351X09000665 crossref_primary_10_1371_journal_pone_0007200 crossref_primary_10_1007_s11306_007_0069_z crossref_primary_10_2139_ssrn_3320403 crossref_primary_10_1111_exsy_12167 crossref_primary_10_1186_2041_1480_4_36 crossref_primary_10_1016_j_eswa_2014_02_045 crossref_primary_10_20900_mo20200001 crossref_primary_10_1002_wnan_152 crossref_primary_10_1016_j_websem_2014_11_005 crossref_primary_10_1097_FPC_0b013e32832e2ced crossref_primary_10_1080_00207543_2020_1787534 crossref_primary_10_1093_database_baab003 crossref_primary_10_1089_omi_2008_A2B2 crossref_primary_10_1186_1479_5876_8_22 crossref_primary_10_4018_ijehmc_2014070105 crossref_primary_10_1186_1471_2105_9_S5_S5 crossref_primary_10_1016_j_jbi_2023_104405 crossref_primary_10_1089_omi_2020_0170 crossref_primary_10_1016_j_yrtph_2008_10_011 crossref_primary_10_1016_j_ijmedinf_2012_10_001 crossref_primary_10_1016_j_ijmedinf_2014_06_002 crossref_primary_10_3390_app10186553 crossref_primary_10_1017_S0140525X22002874 crossref_primary_10_1177_00375497231176085 crossref_primary_10_1525_jer_2009_4_1_43 crossref_primary_10_1016_j_jbi_2011_08_003 crossref_primary_10_1186_1471_2105_11_103 crossref_primary_10_1016_j_websem_2019_01_002 crossref_primary_10_1080_07352680802202034 crossref_primary_10_1098_rsta_2008_0079 crossref_primary_10_1093_bib_bbr051 crossref_primary_10_1016_j_jbi_2012_02_013 crossref_primary_10_1038_nbt1346 crossref_primary_10_1136_heartjnl_2015_308724 crossref_primary_10_1186_2041_1480_4_13 crossref_primary_10_1016_j_jbi_2011_10_001 crossref_primary_10_1093_nar_gkn317 crossref_primary_10_21205_deufmd_2024267619 crossref_primary_10_1016_j_jbi_2023_104579 crossref_primary_10_1186_1471_2105_12_371 crossref_primary_10_1371_journal_pone_0061425 crossref_primary_10_1007_s00214_009_0670_5 crossref_primary_10_1016_j_joim_2020_08_006 crossref_primary_10_1016_j_jbi_2010_03_001 crossref_primary_10_1186_2193_8636_1_8 crossref_primary_10_1186_1471_2105_14_53 crossref_primary_10_1371_journal_pone_0049198 crossref_primary_10_1016_j_bbe_2014_06_002 crossref_primary_10_1016_j_jbi_2009_12_005 crossref_primary_10_1093_bioinformatics_btt565 crossref_primary_10_1088_1361_651X_ab6209 crossref_primary_10_1186_1471_2105_10_S5_S6 crossref_primary_10_1016_j_jbi_2010_09_004 crossref_primary_10_1016_j_jbi_2014_07_016 crossref_primary_10_1016_j_jbi_2023_104383 crossref_primary_10_1186_2041_1480_4_26 crossref_primary_10_1007_s00421_012_2507_5 crossref_primary_10_1289_ehp_9817 crossref_primary_10_3414_ME10_05_0004 crossref_primary_10_1038_nri2092 crossref_primary_10_1186_1471_2105_7_267 crossref_primary_10_1136_amiajnl_2011_000631 crossref_primary_10_1197_jamia_M2824 crossref_primary_10_1016_j_cortex_2017_12_014 crossref_primary_10_1148_rg_311105085 crossref_primary_10_1186_1471_2105_9_S4_S3 |
ContentType | Journal Article |
DBID | CGR CUY CVF ECM EIF NPM |
DOI | 10.1089/omi.2006.10.185 |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) |
DatabaseTitleList | MEDLINE |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | no_fulltext_linktorsrc |
Discipline | Biology |
ExternalDocumentID | 16901225 |
Genre | Journal Article Review Research Support, N.I.H., Extramural |
GeographicLocations | United States |
GeographicLocations_xml | – name: United States |
GrantInformation_xml | – fundername: NHGRI NIH HHS grantid: U54 HG004028 |
GroupedDBID | --- 0R~ 123 29N 34G 39C 4.4 53G ABBKN ABJNI ACGFS ADBBV ALMA_UNASSIGNED_HOLDINGS BNQNF CAG CGR COF CS3 CUY CVF EBS ECM EIF EJD F5P IAO IER IGS IHR IM4 ISR ITC MV1 NPM NQHIM O9- P2P RIG RML RNS UE5 ~KM |
ID | FETCH-LOGICAL-c440t-9401ccbe6a0bd00f6560a05e1e6a7b7ed4d2108a78117a5067b548e85c821c352 |
ISSN | 1536-2310 |
IngestDate | Sat Sep 28 07:41:51 EDT 2024 |
IsDoiOpenAccess | false |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 2 |
Language | English |
LinkModel | OpenURL |
MergedId | FETCHMERGED-LOGICAL-c440t-9401ccbe6a0bd00f6560a05e1e6a7b7ed4d2108a78117a5067b548e85c821c352 |
OpenAccessLink | https://digital.library.unt.edu/ark:/67531/metadc881902/m2/1/high_res_d/890649.pdf |
PMID | 16901225 |
ParticipantIDs | pubmed_primary_16901225 |
PublicationCentury | 2000 |
PublicationDate | 2006-06-01 |
PublicationDateYYYYMMDD | 2006-06-01 |
PublicationDate_xml | – month: 06 year: 2006 text: 2006-06-01 day: 01 |
PublicationDecade | 2000 |
PublicationPlace | United States |
PublicationPlace_xml | – name: United States |
PublicationTitle | Omics (Larchmont, N.Y.) |
PublicationTitleAlternate | OMICS |
PublicationYear | 2006 |
SSID | ssj0021623 |
Score | 2.1713603 |
SecondaryResourceType | review_article |
Snippet | The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the... |
SourceID | pubmed |
SourceType | Index Database |
StartPage | 185 |
SubjectTerms | Biomedical Research - standards Internet National Institutes of Health (U.S.) Semantics Software United States |
Title | National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge |
URI | https://www.ncbi.nlm.nih.gov/pubmed/16901225 |
Volume | 10 |
hasFullText | |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LSwMxEA5VEbyI77fk4K2sbpbso95UFBFbDyp4kySbQA_dFt0q-nP8pc4k-2pVUC_LkixLN_NlOo98M4QcsMgXMuXKM7oTejyOUi9JO8wzQWK0joRKIyQKd3vR5T2_eggfWq2PxqmlcS4P1fu3vJL_SBXGQK7Ikv2DZKuXwgDcg3zhChKG669k3CsjeRij1U_2yOCp5dPbpb_JcsdFQUKzzfVjXEAWD6B5WXbpcVVkx3gWfdggZ6Il6RiTeKCoXcXfmhbtzQDrPGNjENwy8On5BIGrSOeMpatV4Bjt7SrifK1fXZGD2_G7yDJREyO6oIWEy4nYAgh1_qrbf7bNkdq3_eJPpRG1KE9XVYo28tC2nNDEfgNxQUOtMtfW54u69xOsljoc9F1WCYcmn4QFHg2s9DEdyILgF7NT9bfLqRkyEyeoSXsYDypcehbZBoLV15TFo5LO0dSvwuq0xZumPBhrydwtkcXCBaEnDk_LpKWzFTLvmpK-rZKXElXUoYoCqmiNKlqi6phWmKINTNECU7TGFG1iig4NrTFFK0ytkfuL87uzS6_ozuEpzv3c64BnrpSE_ezL1PcNVnESfqgZjMQy1ilPA1gIYanMIgSrSIJ3rJNQJQFTYPevk9lsmOlNQjXXMGa4DrjhRsWCGXCjVcJ0HIcmDbbIhluwx5ErwfJYLuX2jzM7ZKHG3S6ZM7Dn9R4YkLnctzL8BAbNcaY |
link.rule.ids | 783 |
linkProvider | National Library of Medicine |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=National+Center+for+Biomedical+Ontology%3A+advancing+biomedicine+through+structured+organization+of+scientific+knowledge&rft.jtitle=Omics+%28Larchmont%2C+N.Y.%29&rft.au=Rubin%2C+Daniel+L&rft.au=Lewis%2C+Suzanna+E&rft.au=Mungall%2C+Chris+J&rft.au=Misra%2C+Sima&rft.date=2006-06-01&rft.issn=1536-2310&rft.volume=10&rft.issue=2&rft.spage=185&rft_id=info:doi/10.1089%2Fomi.2006.10.185&rft_id=info%3Apmid%2F16901225&rft_id=info%3Apmid%2F16901225&rft.externalDocID=16901225 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1536-2310&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1536-2310&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1536-2310&client=summon |