Saccharomyces cerevisiae S288C genome annotation: a working hypothesis
The S. cerevisiae genome is the most well‐characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al., 1996). The Saccharomyces Geno...
Saved in:
| Published in | Yeast (Chichester, England) Vol. 23; no. 12; pp. 857 - 865 |
|---|---|
| Main Authors | , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Chichester, UK
John Wiley & Sons, Ltd
01.09.2006
|
| Subjects | |
| Online Access | Get full text |
Cover
Loading…
| Abstract | The S. cerevisiae genome is the most well‐characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al., 1996). The Saccharomyces Genome Database (SGD; www.yeastgenome.org) (Hirschman et al., 2006), the community‐designated repository for this reference genome, strives to ensure that the S. cerevisiae annotation is as accurate and useful as possible. At SGD, the S. cerevisiae genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the S. cerevisiae genome sequence, we discuss the ways in which the S. cerevisiae sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data. Copyright © 2006 John Wiley & Sons, Ltd. |
|---|---|
| AbstractList | The
S. cerevisiae
genome is the most well-characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (
Goffeau
et al
., 1996
). The
Saccharomyces
Genome Database (SGD;
www.yeastgenome.org
) (
Hirschman
et al
., 2006
), the community-designated repository for this reference genome, strives to ensure that the
S. cerevisiae
annotation is as accurate and useful as possible. At SGD, the
S. cerevisiae
genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the
S. cerevisiae
genome sequence, we discuss the ways in which the
S. cerevisiae
sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data. The S. cerevisiae genome is the most well‐characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al., 1996). The Saccharomyces Genome Database (SGD; www.yeastgenome.org) (Hirschman et al., 2006), the community‐designated repository for this reference genome, strives to ensure that the S. cerevisiae annotation is as accurate and useful as possible. At SGD, the S. cerevisiae genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the S. cerevisiae genome sequence, we discuss the ways in which the S. cerevisiae sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data. Copyright © 2006 John Wiley & Sons, Ltd. The S. cerevisiae genome is the most well-characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al., 1996). The Saccharomyces Genome Database (SGD; www.yeastgenome.org) (Hirschman et al., 2006), the community-designated repository for this reference genome, strives to ensure that the S. cerevisiae annotation is as accurate and useful as possible. At SGD, the S. cerevisiae genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the S. cerevisiae genome sequence, we discuss the ways in which the S. cerevisiae sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data. Abstract The S. cerevisiae genome is the most well‐characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al. , 1996 ). The Saccharomyces Genome Database (SGD; www.yeastgenome.org ) (Hirschman et al. , 2006 ), the community‐designated repository for this reference genome, strives to ensure that the S. cerevisiae annotation is as accurate and useful as possible. At SGD, the S. cerevisiae genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the S. cerevisiae genome sequence, we discuss the ways in which the S. cerevisiae sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data. Copyright © 2006 John Wiley & Sons, Ltd. |
| Author | Botstein, David Issel‐Tarver, Laurie Engel, Stacia R. Fisk, Dianna G. Hong, Eurie L. Dolinski, Kara Ball, Catherine A. Schwartz, Katja Sethuraman, Anand Michael Cherry, J. |
| AuthorAffiliation | 2 Department of Biochemistry, School of Medicine, Stanford University, Stanford, CA 94305-5307, USA 3 Lewis-Sigler Institute for Integrative Genomics, Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA 4 Ohlone College, Biology Department, Fremont, CA 94539, USA 1 Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA |
| AuthorAffiliation_xml | – name: 2 Department of Biochemistry, School of Medicine, Stanford University, Stanford, CA 94305-5307, USA – name: 1 Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305-5120, USA – name: 4 Ohlone College, Biology Department, Fremont, CA 94539, USA – name: 3 Lewis-Sigler Institute for Integrative Genomics, Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA |
| Author_xml | – sequence: 1 givenname: Dianna G. surname: Fisk fullname: Fisk, Dianna G. – sequence: 2 givenname: Catherine A. surname: Ball fullname: Ball, Catherine A. – sequence: 3 givenname: Kara surname: Dolinski fullname: Dolinski, Kara – sequence: 4 givenname: Stacia R. surname: Engel fullname: Engel, Stacia R. – sequence: 5 givenname: Eurie L. surname: Hong fullname: Hong, Eurie L. – sequence: 6 givenname: Laurie surname: Issel‐Tarver fullname: Issel‐Tarver, Laurie – sequence: 7 givenname: Katja surname: Schwartz fullname: Schwartz, Katja – sequence: 8 givenname: Anand surname: Sethuraman fullname: Sethuraman, Anand – sequence: 9 givenname: David surname: Botstein fullname: Botstein, David – sequence: 10 givenname: J. surname: Michael Cherry fullname: Michael Cherry, J. email: cherry@stanford.edu |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/17001629$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFkU1LHEEQhpugxF0N5BeEOQUvY6o_ZrrHQ0AWjYLgwQh6anp6a3Y7meleu2dX5t9ndJcYD5JTFdTDw0u9U7Lng0dCPlM4oQDs24DmhAqAD2RCoZI5QEn3yASkqPIC-P0Bmab0C4DSgqmP5IDKcS9ZNSEXt8bapYmhGyymzGLEjUvOYHbLlJplC_Shw8x4H3rTu-BPM5M9hfjb-UW2HFahX2Jy6YjsN6ZN-Gk3D8ndxfnP2WV-ffPjanZ2nVvBK8ilEDW1kglezwVrmgJVKbkq7JzXVph5zbgpKCgpa1YJpMqqxlRYoC2ZlLThh-T71rta1x3OLfo-mlavoutMHHQwTr-9eLfUi7DRHARQxkbB150ghsc1pl53LllsW-MxrJMuVTU-sqD_BWlVKsZZOYLHW9DGkFLE5m8aCvq5HT22o5_bGdEv_6Z_BXd1jEC-BZ5ci8O7Iv1wfvYi_ANDupr3 |
| CitedBy_id | crossref_primary_10_1093_dnares_dsx026 crossref_primary_10_1186_s13059_023_03156_9 crossref_primary_10_1038_s41588_018_0087_y crossref_primary_10_3390_microorganisms7100421 crossref_primary_10_1099_mgen_0_001228 crossref_primary_10_3390_jof8070752 crossref_primary_10_1093_database_baw020 crossref_primary_10_7554_eLife_42955 crossref_primary_10_1016_j_cell_2014_02_054 crossref_primary_10_1021_acs_jproteome_5b00734 crossref_primary_10_1186_s12915_021_01077_2 crossref_primary_10_1128_AAC_02352_16 crossref_primary_10_1242_jcs_051227 crossref_primary_10_1534_genetics_107_074468 crossref_primary_10_1371_journal_pone_0064477 crossref_primary_10_1101_gr_076661_108 crossref_primary_10_1371_journal_pone_0120671 crossref_primary_10_1186_gb_2012_13_2_r12 crossref_primary_10_1534_genetics_110_123497 crossref_primary_10_1007_s00253_020_10464_8 crossref_primary_10_1186_1747_1028_7_24 crossref_primary_10_1371_journal_pone_0037906 crossref_primary_10_1186_1752_0509_6_55 crossref_primary_10_1016_j_biosystems_2022_104606 crossref_primary_10_1016_j_enzmictec_2011_10_007 crossref_primary_10_3390_ijms19082379 crossref_primary_10_1186_1471_2105_10_S12_S7 crossref_primary_10_1128_EC_00143_09 crossref_primary_10_1186_1471_2164_9_245 crossref_primary_10_1101_gr_109504_110 crossref_primary_10_1038_msb4100157 crossref_primary_10_1002_yea_3810 crossref_primary_10_1371_journal_pone_0078105 crossref_primary_10_1007_s00253_011_3167_9 crossref_primary_10_1093_genetics_iyab224 crossref_primary_10_1063_1_3455188 crossref_primary_10_3390_microorganisms9010020 crossref_primary_10_1126_science_aaf4557 crossref_primary_10_1002_pmic_201700219 crossref_primary_10_1093_genetics_iyaa051 crossref_primary_10_1021_acs_jmedchem_8b00692 crossref_primary_10_1261_rna_2754011 crossref_primary_10_1080_12298093_2018_1537585 crossref_primary_10_1101_pdb_prot088906 crossref_primary_10_1016_j_bbalip_2007_02_008 crossref_primary_10_1093_molbev_msn186 crossref_primary_10_1534_g3_120_401709 crossref_primary_10_4161_trns_1_2_12328 crossref_primary_10_1038_nbt_1551 crossref_primary_10_1093_nar_gkt1158 crossref_primary_10_1002_yea_1324 crossref_primary_10_1371_journal_pone_0054144 crossref_primary_10_1186_s12934_022_01793_6 crossref_primary_10_1534_g3_112_002881 crossref_primary_10_1016_j_fm_2020_103670 crossref_primary_10_1016_j_mgene_2014_08_006 crossref_primary_10_18832_kp201720 crossref_primary_10_1002_bit_22592 crossref_primary_10_1093_bioinformatics_btz866 crossref_primary_10_1371_journal_pone_0286696 crossref_primary_10_1038_msb_2009_64 crossref_primary_10_1186_1471_2164_12_377 crossref_primary_10_1038_nbt_1628 crossref_primary_10_1093_femsyr_foz056 crossref_primary_10_1038_nature11184 crossref_primary_10_1371_journal_pgen_1011223 crossref_primary_10_1093_molbev_msw008 crossref_primary_10_1111_j_1751_7915_2008_00030_x crossref_primary_10_1186_s13059_024_03287_7 crossref_primary_10_1002_yea_1894 crossref_primary_10_1186_gm404 crossref_primary_10_1534_g3_113_008995 crossref_primary_10_1091_mbc_E18_04_0258 crossref_primary_10_1007_s00438_009_0461_7 crossref_primary_10_3390_ijms241511960 |
| Cites_doi | 10.1111/j.1365-2958.1993.tb01213.x 10.1016/S0021-9258(18)61188-3 10.1093/genetics/157.3.1117 10.1126/science.274.5287.546 10.1242/jcs.110.9.1063 10.1016/0167-4781(94)90273-9 10.1016/j.gde.2006.02.005 10.1074/jbc.272.48.30350 10.1111/j.1567-1364.2001.tb00040.x 10.1128/MCB.20.4.1187-1193.2000 10.1002/yea.870 10.1002/cfg.86 10.1074/jbc.273.16.9912 10.1002/yea.954 10.1007/s004380051195 10.1101/gr.226802 10.1016/S1097-2765(01)00219-2 10.1242/jcs.00328 10.1083/jcb.134.2.413 10.1016/S0005-2736(00)00222-4 10.1093/nar/28.8.1700 10.1007/s004380050689 10.1091/mbc.8.8.1529 10.1128/MCB.4.12.2735 10.1073/pnas.88.19.8387 10.1017/S1355838299981682 10.1002/(SICI)1097-0061(19960330)12:4<369::AID-YEA922>3.0.CO;2-# 10.1093/genetics/146.3.797 10.1093/nar/gkj117 10.1101/gad.932201 10.1002/yea.320050108 10.1186/gb-2003-4-7-r45 10.1101/gr.232903 10.1073/pnas.141036198 10.1016/S0021-9258(17)37199-5 10.1093/nar/28.14.2804 10.1083/jcb.200111004 10.1128/MCB.12.6.2633 10.1093/nar/gki583 10.1016/S0014-5793(00)02290-0 10.1007/s00294-002-0296-9 10.1016/S0021-9258(19)85082-2 10.1038/nbt0102-58 10.1002/yea.865 10.1126/science.1084337 10.1083/jcb.200208169 10.1038/nature01644 10.1101/gr.7.8.768 10.1016/S0014-5793(00)02275-4 |
| ContentType | Journal Article |
| Copyright | Copyright © 2006 John Wiley & Sons, Ltd. Copyright (c) 2006 John Wiley & Sons, Ltd. Copyright © 2006 John Wiley & Sons, Ltd. 2006 |
| Copyright_xml | – notice: Copyright © 2006 John Wiley & Sons, Ltd. – notice: Copyright (c) 2006 John Wiley & Sons, Ltd. – notice: Copyright © 2006 John Wiley & Sons, Ltd. 2006 |
| CorporateAuthor | Saccharomyces Genome Database Project |
| CorporateAuthor_xml | – name: Saccharomyces Genome Database Project |
| DBID | CGR CUY CVF ECM EIF NPM AAYXX CITATION 8FD FR3 M7N P64 RC3 7X8 5PM |
| DOI | 10.1002/yea.1400 |
| DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef Technology Research Database Engineering Research Database Algology Mycology and Protozoology Abstracts (Microbiology C) Biotechnology and BioEngineering Abstracts Genetics Abstracts MEDLINE - Academic PubMed Central (Full Participant titles) |
| DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef Genetics Abstracts Engineering Research Database Technology Research Database Algology Mycology and Protozoology Abstracts (Microbiology C) Biotechnology and BioEngineering Abstracts MEDLINE - Academic |
| DatabaseTitleList | MEDLINE CrossRef Genetics Abstracts |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology Botany |
| EISSN | 1097-0061 |
| EndPage | 865 |
| ExternalDocumentID | 10_1002_yea_1400 17001629 YEA1400 |
| Genre | article Journal Article Research Support, N.I.H., Extramural |
| GrantInformation_xml | – fundername: National Institutes of Health, USA – fundername: NHGRI NIH HHS grantid: P41 HG001315-16 – fundername: NHGRI NIH HHS grantid: U41 HG001315 – fundername: NHGRI NIH HHS grantid: U24 HG001315 – fundername: NHGRI NIH HHS grantid: P41 HG001315 |
| GroupedDBID | --- -DZ .3N .GA .GJ .Y3 05W 0R~ 10A 123 1L6 1OB 1OC 1ZS 24P 29R 2WC 31~ 33P 3SF 3WU 4.4 4ZD 50Y 50Z 51W 51X 52M 52N 52O 52P 52S 52T 52U 52W 52X 53G 5VS 66C 702 7PT 8-0 8-1 8-3 8-4 8-5 8UM 930 A03 AAESR AAEVG AAHBH AAHHS AAJEY AANLZ AAONW AASGY AAXRX AAZKR ABCQN ABCUV ABEML ABIJN ABJNI ABLJU ABPVW ACAHQ ACBWZ ACCFJ ACCZN ACFBH ACGFO ACGFS ACIWK ACPOU ACPRK ACSCC ACXBN ACXQS ADBBV ADEOM ADIZJ ADKYN ADMGS ADOZA ADXAS ADZMN AEEZP AEGXH AEIGN AEIMD AENEX AEQDE AEUQT AEUYR AFBPY AFFPM AFGKR AFPWT AFZJQ AHBTC AHMBA AIAGR AITYG AIURR AIWBW AJBDE AJXKR ALAGY ALMA_UNASSIGNED_HOLDINGS ALUQN AMBMR AMYDB AOIJS ASPBG ATUGU AUFTA AVWKF AZBYB AZFZN AZVAB BAFTC BDRZF BFHJK BHBCM BLYAC BMNLL BMXJE BNHUX BROTX BRXPI BY8 CS3 D-E D-F DCZOG DPXWK DR1 DR2 DRFUL DRSTM E3Z EBD EBS EJD EMOBN F00 F01 F04 F5P FEDTE G-S G.N GNP GODZA H.T H.X HBH HF~ HGLYW HHY HHZ HVGLF HYE HZ~ IX1 J0M JPC KQ8 KQQ LATKE LAW LC2 LC3 LEEKS LH4 LH6 LITHE LOXES LP6 LP7 LUTES LW6 LYRES MEWTI MK4 MRFUL MRSTM MSFUL MSSTM MXFUL MXSTM M~E N04 N05 N9A NDZJH NF~ NNB O66 O9- OIG OK1 P2P P2W P2X P4D PALCI PGMZT PQQKQ Q.N Q11 QB0 QRW R.K RBB RIWAO RJQFR ROL RPM RWI RX1 RYL SAMSI SUPJJ SV3 TR2 UB1 V2E V8K W8V W99 WBKPD WH7 WIB WIH WIK WIN WJL WNSPC WOHZO WQJ WRC WXSBR WYISQ XG1 XJT XV2 ZZTAW ~IA ~KM ~WT CGR CUY CVF ECM EIF NPM AAYXX CITATION 8FD FR3 M7N P64 RC3 7X8 5PM |
| ID | FETCH-LOGICAL-c4390-744b1c7243bd42ff5e867385cd3bc4adb23a510877b294e18c8fa9e5ec62771f3 |
| IEDL.DBID | DR2 |
| ISSN | 0749-503X |
| IngestDate | Tue Sep 17 21:29:21 EDT 2024 Fri Aug 16 01:28:40 EDT 2024 Sat Aug 17 04:06:16 EDT 2024 Fri Aug 23 03:50:51 EDT 2024 Sat Sep 28 08:18:41 EDT 2024 Sat Aug 24 01:03:03 EDT 2024 |
| IsDoiOpenAccess | false |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 12 |
| Language | English |
| License | Copyright (c) 2006 John Wiley & Sons, Ltd. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c4390-744b1c7243bd42ff5e867385cd3bc4adb23a510877b294e18c8fa9e5ec62771f3 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| OpenAccessLink | https://europepmc.org/articles/pmc3040122?pdf=render |
| PMID | 17001629 |
| PQID | 19682326 |
| PQPubID | 23462 |
| PageCount | 9 |
| ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_3040122 proquest_miscellaneous_68914051 proquest_miscellaneous_19682326 crossref_primary_10_1002_yea_1400 pubmed_primary_17001629 wiley_primary_10_1002_yea_1400_YEA1400 |
| PublicationCentury | 2000 |
| PublicationDate | September 2006 2006-Sep 2006-09-00 20060901 |
| PublicationDateYYYYMMDD | 2006-09-01 |
| PublicationDate_xml | – month: 09 year: 2006 text: September 2006 |
| PublicationDecade | 2000 |
| PublicationPlace | Chichester, UK |
| PublicationPlace_xml | – name: Chichester, UK – name: England |
| PublicationTitle | Yeast (Chichester, England) |
| PublicationTitleAlternate | Yeast |
| PublicationYear | 2006 |
| Publisher | John Wiley & Sons, Ltd |
| Publisher_xml | – name: John Wiley & Sons, Ltd |
| References | 1987; 262 1993; 8 1989; 5 2000; 28 2002; 19 2003; 116 2006; 34 1997; 272 2002; 12 2006; 16 1997; 110 2002; 156 2000; 20 2003; 13 2002; 159 1998; 257 1999; 5 1992; 12 1997; 7 1996; 12 1997; 8 1998; 273 1997; 146 2001; 157 1994; 269 1984; 4 2001; 7 2000; 487 2002; 41 2002; 20 1991; 88 1994; 1219 1989; 264 2003; 4 2001; 15 2000; 263 2001; 2 1996; 274 2001; 1 2003; 423 2003; 301 1996; 134 2003; 20 2005; 33 2000; 1467 2001; 98 McKee AH (e_1_2_6_26_1) 1997; 146 e_1_2_6_32_1 e_1_2_6_30_1 e_1_2_6_19_1 e_1_2_6_13_1 e_1_2_6_36_1 e_1_2_6_11_1 e_1_2_6_34_1 e_1_2_6_17_1 e_1_2_6_15_1 e_1_2_6_38_1 e_1_2_6_43_1 e_1_2_6_20_1 e_1_2_6_9_1 Taylor GR (e_1_2_6_41_1) 1987; 262 e_1_2_6_5_1 e_1_2_6_7_1 e_1_2_6_24_1 e_1_2_6_49_1 e_1_2_6_3_1 e_1_2_6_22_1 e_1_2_6_28_1 e_1_2_6_45_1 e_1_2_6_47_1 e_1_2_6_10_1 e_1_2_6_31_1 e_1_2_6_50_1 e_1_2_6_14_1 e_1_2_6_35_1 e_1_2_6_12_1 e_1_2_6_18_1 e_1_2_6_39_1 e_1_2_6_16_1 Poon PP (e_1_2_6_33_1) 1994; 269 e_1_2_6_37_1 e_1_2_6_42_1 e_1_2_6_21_1 e_1_2_6_40_1 e_1_2_6_8_1 e_1_2_6_4_1 e_1_2_6_6_1 e_1_2_6_25_1 e_1_2_6_48_1 e_1_2_6_23_1 e_1_2_6_2_1 e_1_2_6_29_1 e_1_2_6_44_1 e_1_2_6_27_1 e_1_2_6_46_1 |
| References_xml | – volume: 264 start-page: 1274 year: 1989 end-page: 1283 article-title: Biosynthesis of inositol in yeast. Primary structure of myo‐inositol‐1‐phosphate synthase (EC 5.5.1.4) and functional analysis of its structural gene, the INO1 locus publication-title: J Biol Chem – volume: 34 start-page: D442 year: 2006 end-page: 445 article-title: Genome Snapshot: a new resource at the Genome Database (SGD) presenting an overview of the genome publication-title: Nucleic Acids Res – volume: 1219 start-page: 205 year: 1994 end-page: 210 article-title: from yeast encodes a candidate nuclear factor containing ankyrin repeats and showing homology to mammalian oxysterol‐binding protein publication-title: Biochim Biophys Acta – volume: 88 start-page: 8387 year: 1991 end-page: 8391 article-title: Evolution of aminoacyl‐tRNA synthetase quaternary structure and activity: mitochondrial phenylalanyl‐tRNA synthetase publication-title: Proc Natl Acad Sci USA – volume: 423 start-page: 241 year: 2003 end-page: 254 article-title: Sequencing and comparison of yeast species to identify genes and regulatory elements publication-title: Nature – volume: 272 start-page: 30350 year: 1997 end-page: 30355 article-title: The cysteine‐peptidase bleomycin hydrolase is a member of the galactose regulon in yeast publication-title: J Biol Chem – volume: 8 start-page: 167 year: 1993 end-page: 178 article-title: , a gene involved in ammonia regulation of amino acid transport in publication-title: Mol Microbiol – volume: 20 start-page: 58 year: 2002 end-page: 63 article-title: An integrated approach for finding overlooked genes in yeast publication-title: Nat Biotechnol – volume: 5 start-page: 221 year: 1999 end-page: 234 article-title: Genome‐wide bioinformatic and molecular analysis of introns in publication-title: RNA – volume: 274 start-page: 546 year: 1996 end-page: 567 article-title: Life with 6000 genes publication-title: Science – volume: 1467 start-page: 207 year: 2000 end-page: 218 article-title: The yeast mitochondrial transport proteins: new sequences and consensus residues, lack of direct relation between consensus residues and transmembrane helices, expression patterns of the transport protein genes, and protein–protein interactions with other proteins publication-title: Biochim Biophys Acta – volume: 273 start-page: 9912 year: 1998 end-page: 9920 article-title: Palindrome with spacer of one nucleotide is characteristic of the ‐acting unfolded protein response element in publication-title: J Biol Chem – volume: 12 start-page: 369 year: 1996 end-page: 384 article-title: Discrimination between fortuitous and biologically constrained open reading frames in DNA sequences of publication-title: Yeast – volume: 157 start-page: 1117 year: 2001 end-page: 1140 article-title: Overlapping functions of the yeast oxysterol‐binding protein homologues publication-title: Genetics – volume: 487 start-page: 31 year: 2000 end-page: 36 article-title: Genomic exploration of the hemiascomycetous yeasts: 4. The genome of revisited publication-title: FEBS Lett – volume: 15 start-page: 2730 year: 2001 end-page: 2740 article-title: Functional overlap between Sgs1‐Top3 and the Mms4‐Mus81 endonuclease publication-title: Genes Dev – volume: 19 start-page: 619 year: 2002 end-page: 629 article-title: How many protein‐coding genes are there in the genome? publication-title: Yeast – volume: 7 start-page: 768 year: 1997 end-page: 771 article-title: Small open reading frames: beautiful needles in the haystack publication-title: Genome Res – volume: 257 start-page: 614 year: 1998 end-page: 623 article-title: Mms4, a putative transcriptional (co)activator, protects cells from endogenous and environmental DNA damage publication-title: Mol Gen Genet – volume: 110 start-page: 1063 year: 1997 end-page: 1072 article-title: The yeast VPS5/GRD2 gene encodes a sorting nexin‐1‐like protein required for localizing membrane proteins to the late Golgi publication-title: J Cell Sci – volume: 146 start-page: 797 year: 1997 end-page: 816 article-title: A general method for identifying recessive diploid‐specific mutations in , its application to the isolation of mutants blocked at intermediate stages of meiotic prophase and characterization of a new gene, publication-title: Genetics – volume: 134 start-page: 413 year: 1996 end-page: 427 article-title: The BUD4 protein of yeast, required for axial budding, is localized to the mother/BUD neck in a cell cycle‐dependent manner publication-title: J Cell Biol – volume: 269 start-page: 8341 year: 1994 end-page: 8347 article-title: Thymidylate synthase is localized to the nuclear periphery in the yeast publication-title: J Biol Chem – volume: 12 start-page: 1210 year: 2002 end-page: 1220 article-title: Parallel identification of new genes in publication-title: Genome Res – volume: 28 start-page: 2804 year: 2000 end-page: 2814 article-title: Recognition of protein coding genes in the yeast genome at better than 95% accuracy based on the Z curve publication-title: Nucleic Acids Res – volume: 1 start-page: 241 year: 2001 end-page: 245 article-title: Evidence for the attachment of Hsp150/Pir2 to the cell wall of through disulfide bridges publication-title: FEMS Yeast Res – volume: 262 start-page: 5298 year: 1987 end-page: 5307 article-title: Molecular characterization of the cell cycle‐regulated thymidylate synthase gene of publication-title: J Biol Chem – volume: 33 start-page: 2838 year: 2005 end-page: 2851 article-title: Mapping of transcription start sites in using 5′ SAGE publication-title: Nucleic Acids Res – volume: 98 start-page: 7801 year: 2001 end-page: 7805 article-title: A TRP homolog in forms an intracellular Ca(2+)‐permeable channel in the yeast vacuolar membrane publication-title: Proc Natl Acad Sci USA – volume: 7 start-page: 741 year: 2001 end-page: 751 article-title: A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control publication-title: Mol Cell – volume: 20 start-page: 133 year: 2003 end-page: 148 article-title: Identification of novel protein–protein interactions at the cytosolic surface of the Sec63 complex in the yeast ER membrane publication-title: Yeast – volume: 159 start-page: 945 year: 2002 end-page: 956 article-title: Mps3p is a novel component of the yeast spindle pole body that interacts with the yeast centrin homologue Cdc31p publication-title: J Cell Biol – volume: 487 start-page: 113 year: 2000 end-page: 121 article-title: Genomic exploration of the hemiascomycetous yeasts: 19. Ascomycetes‐specific genes publication-title: FEBS Lett – volume: 13 start-page: 264 year: 2003 end-page: 271 article-title: Systematic discovery of new genes in the genome publication-title: Genome Res – volume: 301 start-page: 71 year: 2003 end-page: 76 article-title: Finding functional features in genomes by phylogenetic footprinting publication-title: Science – volume: 16 start-page: 119 year: 2006 end-page: 124 article-title: Patterning chromatin: form and function for H2A.Z variant nucleosomes publication-title: Curr Opin Genet Dev – volume: 20 start-page: 1187 year: 2000 end-page: 1193 article-title: Tim18p, a new subunit of the TIM22 complex that mediates insertion of imported proteins into the yeast mitochondrial inner membrane publication-title: Mol Cell Biol – volume: 12 start-page: 2633 year: 1992 end-page: 2643 article-title: , a gene involved in pre‐tRNA processing, encodes a nuclear protein containing zinc finger motifs publication-title: Mol Cell Biol – volume: 28 start-page: 1700 year: 2000 end-page: 1706 article-title: Test of intron predictions reveals novel splice sites, alternatively spliced mRNAs and new introns in meiotically regulated genes of yeast publication-title: Nucleic Acids Res – volume: 4 start-page: R45 year: 2003 article-title: Reinvestigation of the genome annotation by comparison to the genome of a related fungus: publication-title: Genome Biol – volume: 5 start-page: 55 year: 1989 end-page: 72 article-title: Sequence and mutational analysis of , a gene essential for growth in publication-title: Yeast – volume: 41 start-page: 132 year: 2002 end-page: 141 article-title: The URH1 uridine ribohydrolase of publication-title: Curr Genet – volume: 8 start-page: 1529 year: 1997 end-page: 1541 article-title: A sorting nexin‐1 homologue, Vps5p, forms a complex with Vps17p and is required for recycling the vacuolar protein‐sorting receptor publication-title: Mol Biol Cell – volume: 2 start-page: 143 year: 2001 end-page: 154 article-title: A re‐annotation of the genome publication-title: Comp Funct Genom – volume: 4 start-page: 2735 year: 1984 end-page: 2744 article-title: Primary structure of the RAD52 gene in publication-title: Mol Cell Biol – volume: 116 start-page: 1107 year: 2003 end-page: 1115 article-title: Role of the Vtc proteins in V‐ATPase stability and membrane trafficking publication-title: J Cell Sci – volume: 19 start-page: 699 year: 2002 end-page: 702 article-title: Revisiting the yeast chromosome VI DNA sequence reveals a correction merging YFL007w and YFL006w to a single ORF publication-title: Yeast – volume: 156 start-page: 29 year: 2002 end-page: 34 article-title: Internal Ca(2+) release in yeast is triggered by hypertonic shock and mediated by a TRP channel homologue publication-title: J Cell Biol – volume: 263 start-page: 505 year: 2000 end-page: 513 article-title: Ambient pH signalling in ascomycetous yeasts involves homologues of the genes and publication-title: Mol Gen Genet – ident: e_1_2_6_39_1 doi: 10.1111/j.1365-2958.1993.tb01213.x – volume: 262 start-page: 5298 year: 1987 ident: e_1_2_6_41_1 article-title: Molecular characterization of the cell cycle‐regulated thymidylate synthase gene of Saccharomyces cerevisiae publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)61188-3 contributor: fullname: Taylor GR – ident: e_1_2_6_5_1 doi: 10.1093/genetics/157.3.1117 – ident: e_1_2_6_13_1 doi: 10.1126/science.274.5287.546 – ident: e_1_2_6_30_1 doi: 10.1242/jcs.110.9.1063 – ident: e_1_2_6_38_1 doi: 10.1016/0167-4781(94)90273-9 – ident: e_1_2_6_34_1 doi: 10.1016/j.gde.2006.02.005 – ident: e_1_2_6_50_1 doi: 10.1074/jbc.272.48.30350 – ident: e_1_2_6_28_1 doi: 10.1111/j.1567-1364.2001.tb00040.x – ident: e_1_2_6_21_1 doi: 10.1128/MCB.20.4.1187-1193.2000 – ident: e_1_2_6_35_1 doi: 10.1002/yea.870 – ident: e_1_2_6_46_1 doi: 10.1002/cfg.86 – ident: e_1_2_6_27_1 doi: 10.1074/jbc.273.16.9912 – ident: e_1_2_6_45_1 doi: 10.1002/yea.954 – ident: e_1_2_6_43_1 doi: 10.1007/s004380051195 – ident: e_1_2_6_31_1 doi: 10.1101/gr.226802 – ident: e_1_2_6_3_1 doi: 10.1016/S1097-2765(01)00219-2 – ident: e_1_2_6_29_1 doi: 10.1242/jcs.00328 – ident: e_1_2_6_36_1 doi: 10.1083/jcb.134.2.413 – ident: e_1_2_6_6_1 doi: 10.1016/S0005-2736(00)00222-4 – ident: e_1_2_6_10_1 doi: 10.1093/nar/28.8.1700 – ident: e_1_2_6_47_1 doi: 10.1007/s004380050689 – ident: e_1_2_6_16_1 doi: 10.1091/mbc.8.8.1529 – ident: e_1_2_6_2_1 doi: 10.1128/MCB.4.12.2735 – ident: e_1_2_6_37_1 doi: 10.1073/pnas.88.19.8387 – ident: e_1_2_6_40_1 doi: 10.1017/S1355838299981682 – ident: e_1_2_6_42_1 doi: 10.1002/(SICI)1097-0061(19960330)12:4<369::AID-YEA922>3.0.CO;2-# – volume: 146 start-page: 797 year: 1997 ident: e_1_2_6_26_1 article-title: A general method for identifying recessive diploid‐specific mutations in Saccharomyces cerevisiae, its application to the isolation of mutants blocked at intermediate stages of meiotic prophase and characterization of a new gene, SAE2 publication-title: Genetics doi: 10.1093/genetics/146.3.797 contributor: fullname: McKee AH – ident: e_1_2_6_15_1 doi: 10.1093/nar/gkj117 – ident: e_1_2_6_18_1 doi: 10.1101/gad.932201 – ident: e_1_2_6_14_1 doi: 10.1002/yea.320050108 – ident: e_1_2_6_8_1 doi: 10.1186/gb-2003-4-7-r45 – ident: e_1_2_6_20_1 doi: 10.1101/gr.232903 – ident: e_1_2_6_32_1 doi: 10.1073/pnas.141036198 – volume: 269 start-page: 8341 year: 1994 ident: e_1_2_6_33_1 article-title: Thymidylate synthase is localized to the nuclear periphery in the yeast Saccharomyces cerevisiae publication-title: J Biol Chem doi: 10.1016/S0021-9258(17)37199-5 contributor: fullname: Poon PP – ident: e_1_2_6_48_1 doi: 10.1093/nar/28.14.2804 – ident: e_1_2_6_12_1 doi: 10.1083/jcb.200111004 – ident: e_1_2_6_44_1 doi: 10.1128/MCB.12.6.2633 – ident: e_1_2_6_49_1 doi: 10.1093/nar/gki583 – ident: e_1_2_6_25_1 doi: 10.1016/S0014-5793(00)02290-0 – ident: e_1_2_6_23_1 doi: 10.1007/s00294-002-0296-9 – ident: e_1_2_6_11_1 doi: 10.1016/S0021-9258(19)85082-2 – ident: e_1_2_6_22_1 doi: 10.1038/nbt0102-58 – ident: e_1_2_6_24_1 doi: 10.1002/yea.865 – ident: e_1_2_6_9_1 doi: 10.1126/science.1084337 – ident: e_1_2_6_17_1 doi: 10.1083/jcb.200208169 – ident: e_1_2_6_19_1 doi: 10.1038/nature01644 – ident: e_1_2_6_4_1 doi: 10.1101/gr.7.8.768 – ident: e_1_2_6_7_1 doi: 10.1016/S0014-5793(00)02275-4 |
| SSID | ssj0011528 |
| Score | 2.1682925 |
| Snippet | The S. cerevisiae genome is the most well‐characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its... The S. cerevisiae genome is the most well-characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its... Abstract The S. cerevisiae genome is the most well‐characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs),... The S. cerevisiae genome is the most well-characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its... |
| SourceID | pubmedcentral proquest crossref pubmed wiley |
| SourceType | Open Access Repository Aggregation Database Index Database Publisher |
| StartPage | 857 |
| SubjectTerms | Base Sequence Chromosomes, Fungal - genetics comparative genomics Databases, Nucleic Acid exon/intron boundaries genome annotation genome sequence Genome, Fungal Molecular Sequence Data Open Reading Frames S. cerevisiae Saccharomyces cerevisiae Saccharomyces cerevisiae - genetics |
| Title | Saccharomyces cerevisiae S288C genome annotation: a working hypothesis |
| URI | https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fyea.1400 https://www.ncbi.nlm.nih.gov/pubmed/17001629 https://search.proquest.com/docview/19682326 https://search.proquest.com/docview/68914051 https://pubmed.ncbi.nlm.nih.gov/PMC3040122 |
| Volume | 23 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT9wwEB5VqJV66QP6SF-4EuotkNiO7fRGKSvEgUMBaaseItuxxaoiQc2uqvTX1xNvli4IqeKUQyaJ4_GMP9sz3wDsCC6crG2WFrXWKWfCp6VwYeHqM85N4bLSDGyfJ-LonB9Pi-kyqhJzYSI_xGrDDS1j8Ndo4Np0e9ekob3TwcwzXK7nTGI019dvK-aogHOGsqphgizTImPTkXc2o3vjg-sz0S14eTtK8l_0Okw_k6fwY2x4jDr5ubuYm1375wan4_3-7Bk8WaJSsh-H0XN44JpNeBTrVPab8PBLGzBkvwWTU20xT6u97IN_IXYIEu5m2pFTqtQBQcbXS0d007TxiP8z0eR33I8nF_0Vpnt1s-4FnE8Ozw6O0mUlhtQGwJKlMugtt5JyZmpOvS-cwmqhha2ZsVzXhjIdjFtJaWjJXa6s8rp0hbOCSpl79hI2mrZxr4F4ymslja5LX3OsXYmcf8jaZqhjudcJfBy1Ul1Fwo0qUivTKnRMhR2TwPaoripYAx5x6Ma1i64K_kQFjCjulhCqDK8o8gReRfVefwWP4AUtE5Bril8JIBP3-p1mdjEwcrPgCnNKE_g06PXOhlffD_fx-uZ_Bd_C47jng0Ft72Bj_mvh3gcUNDcfhvH-F3FaBEY |
| link.rule.ids | 230,315,783,787,888,1378,27936,27937,46306,46730 |
| linkProvider | Wiley-Blackwell |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Lb9QwEB5VBQQXHuUVXjUS4pY2sR3bgVMpXS1QeqCttEhIke3Y6go1qdhdofDrGcfNlqWqhDjlECdxPJ7x55nxNwCvBBdO1jZLi1rrlDPh01I43Lj6jHNTuKw0PdvngRgf84-TYrIGb4ezMJEfYulwC5rR2-ug4MEhvX3BGto5jXqe4X79Gmo7C3Ub3n9Zckch0ukLq-ISWaZFxiYD82xGt4cnV9eiSwDzcp7kn_i1X4BGd-Db0PWYd_J9azE3W_bXX6yO__lvd-H2OTAlO3Em3YM112zAjViqstuA6-9ahJHdfRgdahuOarWnHZoYYvs84dlUO3JIldolgfT11BHdNG2M8r8hmvyMLnly0p2FE1-z6ewBHI_2jnbH6XkxhtQiZslSiaLLraScmZpT7wunQsHQwtbMWK5rQ5lG_VZSGlpylyurvC5d4aygUuaePYT1pm3cYyCe8lpJo-vS1zyUrwy0f4G4zVDHcq8TeDmIpTqLnBtVZFemFQ5MFQYmgc1BXhUqRIhy6Ma1i1mFJkUhTBRXtxCqxFcUeQKPonwvvhKi8IKWCcgVyS8bBDLu1TvN9KQn5WZoDXNKE3jdC_bKjldf93bC9cm_NtyEm-Ojz_vV_oeDT0_hVnQBhRy3Z7A-_7FwzxEUzc2LfvL_Bph-CF4 |
| linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Zb9QwEB6hcogXjnI0XDUS4i1t4ji2w1spXZVDFaJUWsRD5FNdoSar7q5Q-PWM482WpaqEeMpDJonj8Yw_2zPfALzijDthTZaWVqmUFdynFXe4cPUZY7p0WaV7ts8jfnjCPozL8TKqMuTCRH6I1YZbsIzeXwcDn1q_e0Ea2jmFZp7hcv064wh8AyD6sqKOQqDT11XFGbJKy6wYD8SzGd0dnlyfii7hy8thkn_C137-Gd2F70PLY9jJj53FXO-YX3-ROv7fr92DO0tYSvbiOLoP11yzCTdjocpuE268bRFEdg9gdKxMSNRqzzp0MMT0UcKziXLkmEq5TwLl65kjqmnaeMb_hijyM27Ik9NuGvK9ZpPZQzgZHXzdP0yXpRhSg4glSwUqLjeCskJbRr0vnQzlQktjC22YspoWCq1bCqFpxVwujfSqcqUznAqR--IRbDRt47aAeMqsFFrZylsWilcG0r9A26apK3KvEng5aKWeRsaNOnIr0xo7pg4dk8D2oK4azSGccajGtYtZjQ5FIkjkV0twWeEryjyBx1G9F18JZ_CcVgmINcWvBAIV9_qdZnLaU3IX6AtzShN43ev1yobX3w72wvXJvwpuw63P70b1p_dHH5_C7bj_EwLcnsHG_HzhniMimusX_dD_DYOBBw0 |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Saccharomyces+cerevisiae+S288C+genome+annotation%3A+a+working+hypothesis&rft.jtitle=Yeast+%28Chichester%2C+England%29&rft.au=Fisk%2C+D+G&rft.au=Ball%2C+CA&rft.au=Dolinski%2C+K&rft.au=Engel%2C+SR&rft.date=2006-09-01&rft.issn=0749-503X&rft.volume=23&rft.issue=12&rft.spage=857&rft.epage=865&rft_id=info:doi/10.1002%2Fyea.1400&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0749-503X&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0749-503X&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0749-503X&client=summon |