Logistics and quality control for DNA sampling in large multicenter studies
To study associations between genetic variation and disease, large bio‐banks need to be created in multicenter studies. Therefore, we studied the effects of storage time and temperature on DNA quality and quantity in a simulation experiment with storage up to 28 days frozen, at 4 °C and at room temp...
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Published in | Journal of thrombosis and haemostasis Vol. 1; no. 5; pp. 987 - 991 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
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Oxford, UK
Blackwell Science Inc
01.05.2003
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Abstract | To study associations between genetic variation and disease, large bio‐banks need to be created in multicenter studies. Therefore, we studied the effects of storage time and temperature on DNA quality and quantity in a simulation experiment with storage up to 28 days frozen, at 4 °C and at room temperature. In the simulation experiment, the conditions did not influence the amount or quality of DNA to an unsatisfactory level. However, the amount of extracted DNA was decreased in frozen samples and in samples that were stored for > 7 days at room temperature. In a sample of patients from 24 countries of the EUROPA trial obtained by mail with transport times up to 1 month DNA yield and quality were adequate. From these results we conclude that transport of non‐frozen blood by ordinary mail is usable and practical for DNA isolation for polymerase chain reaction in clinical and epidemiological studies. |
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AbstractList | To study associations between genetic variation and disease, large bio-banks need to be created in multicenter studies. Therefore, we studied the effects of storage time and temperature on DNA quality and quantity in a simulation experiment with storage up to 28 days frozen, at 4 degrees C and at room temperature. In the simulation experiment, the conditions did not influence the amount or quality of DNA to an unsatisfactory level. However, the amount of extracted DNA was decreased in frozen samples and in samples that were stored for > 7 days at room temperature. In a sample of patients from 24 countries of the EUROPA trial obtained by mail with transport times up to 1 month DNA yield and quality were adequate. From these results we conclude that transport of non-frozen blood by ordinary mail is usable and practical for DNA isolation for polymerase chain reaction in clinical and epidemiological studies. To study associations between genetic variation and disease, large bio‐banks need to be created in multicenter studies. Therefore, we studied the effects of storage time and temperature on DNA quality and quantity in a simulation experiment with storage up to 28 days frozen, at 4 °C and at room temperature. In the simulation experiment, the conditions did not influence the amount or quality of DNA to an unsatisfactory level. However, the amount of extracted DNA was decreased in frozen samples and in samples that were stored for > 7 days at room temperature. In a sample of patients from 24 countries of the EUROPA trial obtained by mail with transport times up to 1 month DNA yield and quality were adequate. From these results we conclude that transport of non‐frozen blood by ordinary mail is usable and practical for DNA isolation for polymerase chain reaction in clinical and epidemiological studies. |
Author | Kluft, C. Simoons, M. L. Nederhand, R. J. Droog, S. De Maat, M. P. M. |
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Cites_doi | 10.1093/nar/16.3.1215 10.1046/j.1537-2995.1992.32592327714.x 10.1093/clinchem/44.1.12 10.1055/s-0037-1613089 10.1016/0009-8981(92)90116-8 10.1002/ajmg.1320270216 10.1093/nar/19.5.1151 10.1007/BF00553174 10.1515/CCLM.1998.094 10.1023/A:1011131130922 10.1136/jcp.47.4.318 10.1016/0735-0651(88)90002-7 10.1002/ajh.2830280309 |
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References | 1998; 38 1993; 14 1991; 19 1995; 57 1988; 5 1997; 14 1988; 16 2002; 87 1993; 31 1988; 28 1994; 47 1992; 207 2001; 15 1996; 120 1992; 32 1998; 44 1989 1987; 27 Neumaier (10.1046/j.1538-7836.2003.00216.x_bb0065) 1998; 44 Gomma (10.1046/j.1538-7836.2003.00216.x_bb0035) 2001; 15 Farkas (10.1046/j.1538-7836.2003.00216.x_bb0040) 1996; 120 Madisen (10.1046/j.1538-7836.2003.00216.x_bb0080) 1987; 27 Mage (10.1046/j.1538-7836.2003.00216.x_bb0025) 1988; 5 Busch (10.1046/j.1538-7836.2003.00216.x_bb0070) 1992; 32 Thomson (10.1046/j.1538-7836.2003.00216.x_bb0020) 1992; 207 Bladbjerg (10.1046/j.1538-7836.2003.00216.x_bb0060) 2002; 87 Visvikis (10.1046/j.1538-7836.2003.00216.x_bb0095) 1998; 38 Sepp (10.1046/j.1538-7836.2003.00216.x_bb0015) 1994; 47 Lahiri (10.1046/j.1538-7836.2003.00216.x_bb0085) 1993; 31 Miller (10.1046/j.1538-7836.2003.00216.x_bb0030) 1988; 16 Sambrook (10.1046/j.1538-7836.2003.00216.x_bb0045) 1989 Edberg (10.1046/j.1538-7836.2003.00216.x_bb0055) 1997; 14 Cushwa (10.1046/j.1538-7836.2003.00216.x_bb0090) 1993; 14 Cascorbi (10.1046/j.1538-7836.2003.00216.x_bb0050) 1995; 57 Panaccio (10.1046/j.1538-7836.2003.00216.x_bb0075) 1991; 19 Hanson (10.1046/j.1538-7836.2003.00216.x_bb0010) 1988; 28 |
References_xml | – volume: 44 start-page: 12 year: 1998 end-page: 26 article-title: Fundamentals of quality assessment of molecular amplification methods in clinical diagnostics. International Federation of Clinical Chemistry Scientific Division Committee on Molecular Biology Techniques publication-title: Clin Chem – volume: 207 start-page: 169 year: 1992 end-page: 74 article-title: Routine use of hair root or buccal swab specimens for PCR analysis: advantages over using blood publication-title: Clin Chim Acta – volume: 120 start-page: 591 year: 1996 end-page: 6 article-title: Specimen collection and storage for diagnostic molecular pathology investigation publication-title: Arch Pathol Lab Med – volume: 31 start-page: 321 year: 1993 end-page: 8 article-title: DNA isolation by a rapid method from human blood samples: effects of MgCl2, EDTA, storage time, and temperature on DNA yield and quality publication-title: Biochem Genet – volume: 38 start-page: 551 year: 1998 end-page: 5 article-title: DNA extraction and stability for epidemiological studies publication-title: Clin Chem Lab Med – volume: 28 start-page: 176 year: 1988 end-page: 80 article-title: A modified method of DNA extraction from peripheral blood and bone marrow specimens publication-title: Am J Hematol – volume: 19 start-page: 1151 year: 1991 article-title: PCR based diagnosis in the presence of 8% (v/v) blood publication-title: Nucl Acids Res – volume: 47 start-page: 318 year: 1994 end-page: 23 article-title: Rapid techniques for DNA extraction from routinely processed archival tissue for use in PCR publication-title: J Clin Pathol – volume: 16 start-page: 1215 year: 1988 article-title: A simple salting out procedure for extracting DNA from human nucleated cells publication-title: Nucl Acids Res – volume: 32 start-page: 420 year: 1992 end-page: 5 article-title: Impact of specimen handling and storage on detection of hepatitis C virus RNA publication-title: Transfusion – volume: 14 start-page: 204 year: 1993 end-page: 7 article-title: Effects of blood storage time and temperature on DNA yield and quality publication-title: Biotechniques – volume: 5 start-page: 94 year: 1988 end-page: 6 article-title: Genetic analyses of restriction fragment length polymorphisms using high molecular weight DNA from sperm or lymphocytes embedded in agarose publication-title: Gene Anal Tech – year: 1989 – volume: 87 start-page: 812 year: 2002 end-page: 6 article-title: Internal quality control of PCR‐based genotyping methods in research studies and patient diagnostics publication-title: Thromb Haemost – volume: 57 start-page: 581 year: 1995 end-page: 92 article-title: Arylamine N‐acetyltransferase (NAT2) mutations and their allelic linkage in unrelated Caucasian individuals: correlation with phenotypic activity publication-title: Am J Hum Genet – volume: 27 start-page: 379 year: 1987 end-page: 90 article-title: DNA banking: the effects of storage of blood and isolated DNA on the integrity of DNA publication-title: Am J Med Genet – volume: 15 start-page: 169 year: 2001 end-page: 79 article-title: The EUROPA trial: design, baseline demography and the status of the substudies publication-title: Cardiovasc Drugs Ther – volume: 14 start-page: 183 year: 1997 end-page: 95 article-title: Analysis of FcgammaRII gene polymorphisms in Wegener's granulomatosis publication-title: Exp Clin Immunogenet – volume: 16 start-page: 1215 year: 1988 ident: 10.1046/j.1538-7836.2003.00216.x_bb0030 article-title: A simple salting out procedure for extracting DNA from human nucleated cells publication-title: Nucl Acids Res doi: 10.1093/nar/16.3.1215 contributor: fullname: Miller – volume: 32 start-page: 420 year: 1992 ident: 10.1046/j.1538-7836.2003.00216.x_bb0070 article-title: Impact of specimen handling and storage on detection of hepatitis C virus RNA publication-title: Transfusion doi: 10.1046/j.1537-2995.1992.32592327714.x contributor: fullname: Busch – volume: 44 start-page: 12 year: 1998 ident: 10.1046/j.1538-7836.2003.00216.x_bb0065 article-title: Fundamentals of quality assessment of molecular amplification methods in clinical diagnostics. International Federation of Clinical Chemistry Scientific Division Committee on Molecular Biology Techniques publication-title: Clin Chem doi: 10.1093/clinchem/44.1.12 contributor: fullname: Neumaier – volume: 87 start-page: 812 year: 2002 ident: 10.1046/j.1538-7836.2003.00216.x_bb0060 article-title: Internal quality control of PCR-based genotyping methods in research studies and patient diagnostics publication-title: Thromb Haemost doi: 10.1055/s-0037-1613089 contributor: fullname: Bladbjerg – volume: 207 start-page: 169 year: 1992 ident: 10.1046/j.1538-7836.2003.00216.x_bb0020 article-title: Routine use of hair root or buccal swab specimens for PCR analysis: advantages over using blood publication-title: Clin Chim Acta doi: 10.1016/0009-8981(92)90116-8 contributor: fullname: Thomson – volume: 14 start-page: 183 year: 1997 ident: 10.1046/j.1538-7836.2003.00216.x_bb0055 article-title: Analysis of FcgammaRII gene polymorphisms in Wegener's granulomatosis publication-title: Exp Clin Immunogenet contributor: fullname: Edberg – volume: 27 start-page: 379 year: 1987 ident: 10.1046/j.1538-7836.2003.00216.x_bb0080 article-title: DNA banking: the effects of storage of blood and isolated DNA on the integrity of DNA publication-title: Am J Med Genet doi: 10.1002/ajmg.1320270216 contributor: fullname: Madisen – volume: 57 start-page: 581 year: 1995 ident: 10.1046/j.1538-7836.2003.00216.x_bb0050 article-title: Arylamine N-acetyltransferase (NAT2) mutations and their allelic linkage in unrelated Caucasian individuals: correlation with phenotypic activity publication-title: Am J Hum Genet contributor: fullname: Cascorbi – volume: 14 start-page: 204 year: 1993 ident: 10.1046/j.1538-7836.2003.00216.x_bb0090 article-title: Effects of blood storage time and temperature on DNA yield and quality publication-title: Biotechniques contributor: fullname: Cushwa – volume: 19 start-page: 1151 year: 1991 ident: 10.1046/j.1538-7836.2003.00216.x_bb0075 article-title: PCR based diagnosis in the presence of 8% (v/v) blood publication-title: Nucl Acids Res doi: 10.1093/nar/19.5.1151 contributor: fullname: Panaccio – volume: 120 start-page: 591 year: 1996 ident: 10.1046/j.1538-7836.2003.00216.x_bb0040 article-title: Specimen collection and storage for diagnostic molecular pathology investigation publication-title: Arch Pathol Lab Med contributor: fullname: Farkas – volume: 31 start-page: 321 year: 1993 ident: 10.1046/j.1538-7836.2003.00216.x_bb0085 article-title: DNA isolation by a rapid method from human blood samples: effects of MgCl2, EDTA, storage time, and temperature on DNA yield and quality publication-title: Biochem Genet doi: 10.1007/BF00553174 contributor: fullname: Lahiri – volume: 38 start-page: 551 year: 1998 ident: 10.1046/j.1538-7836.2003.00216.x_bb0095 article-title: DNA extraction and stability for epidemiological studies publication-title: Clin Chem Lab Med doi: 10.1515/CCLM.1998.094 contributor: fullname: Visvikis – volume: 15 start-page: 169 year: 2001 ident: 10.1046/j.1538-7836.2003.00216.x_bb0035 article-title: The EUROPA trial: design, baseline demography and the status of the substudies publication-title: Cardiovasc Drugs Ther doi: 10.1023/A:1011131130922 contributor: fullname: Gomma – year: 1989 ident: 10.1046/j.1538-7836.2003.00216.x_bb0045 contributor: fullname: Sambrook – volume: 47 start-page: 318 year: 1994 ident: 10.1046/j.1538-7836.2003.00216.x_bb0015 article-title: Rapid techniques for DNA extraction from routinely processed archival tissue for use in PCR publication-title: J Clin Pathol doi: 10.1136/jcp.47.4.318 contributor: fullname: Sepp – volume: 5 start-page: 94 year: 1988 ident: 10.1046/j.1538-7836.2003.00216.x_bb0025 article-title: Genetic analyses of restriction fragment length polymorphisms using high molecular weight DNA from sperm or lymphocytes embedded in agarose publication-title: Gene Anal Tech doi: 10.1016/0735-0651(88)90002-7 contributor: fullname: Mage – volume: 28 start-page: 176 year: 1988 ident: 10.1046/j.1538-7836.2003.00216.x_bb0010 article-title: A modified method of DNA extraction from peripheral blood and bone marrow specimens publication-title: Am J Hematol doi: 10.1002/ajh.2830280309 contributor: fullname: Hanson |
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Snippet | To study associations between genetic variation and disease, large bio‐banks need to be created in multicenter studies. Therefore, we studied the effects of... To study associations between genetic variation and disease, large bio-banks need to be created in multicenter studies. Therefore, we studied the effects of... |
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SubjectTerms | Blood Banking - methods Blood Banks - standards Blood Cells Blood Specimen Collection - methods Blood Specimen Collection - standards clinical trial DNA - isolation & purification DNA isolation Humans Organization and Administration Preservation, Biological - methods Preservation, Biological - standards Quality Control Temperature Time Factors Transportation - standards |
Title | Logistics and quality control for DNA sampling in large multicenter studies |
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