Challenges of unculturable bacteria: environmental perspectives

Environmental biotechnology offers several promising techniques for the rehabilitation of polluted environments. The modern industrialized world presents novel challenges to the environmental sciences, requiring a constant development and deepening of knowledge to enable the characterization of nove...

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Published inReviews in environmental science and biotechnology Vol. 19; no. 1; pp. 1 - 22
Main Authors Bodor, Attila, Bounedjoum, Naila, Vincze, György Erik, Erdeiné Kis, Ágnes, Laczi, Krisztián, Bende, Gábor, Szilágyi, Árpád, Kovács, Tamás, Perei, Katalin, Rákhely, Gábor
Format Journal Article
LanguageEnglish
Published Dordrecht Springer Netherlands 01.03.2020
Springer Nature B.V
Subjects
Atmospheric Protection/Air Quality Control/Air Pollution
Bacteria
Bioremediation
Biotechnology
Earth and Environmental Science
Environment
Environmental Engineering/Biotechnology
Environmental science
Limiting factors
Metabolites
Microbial activity
Microbiology
Microbiomes
Microorganisms
Pollutants
Polluted environments
Rehabilitation
Resuscitation
Review Paper
Siderophores
Viable but nonculturable bacteria
Environmental application of VBNC bacteria
Exploitation of microbial metabolic potential
Uncultured bacteria
Bacterial resuscitation
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Abstract Environmental biotechnology offers several promising techniques for the rehabilitation of polluted environments. The modern industrialized world presents novel challenges to the environmental sciences, requiring a constant development and deepening of knowledge to enable the characterization of novel pollutants and a better understanding of the bioremediation strategies as well as their limiting factors. The success of bioremediation depends heavily on the survival and activities of indigenous microbial communities and their interaction with introduced microorganisms. The majority of natural microbiomes remain uncultivated; therefore, further investigations focusing on their intrinsic functions in ecosystems are needed. In this review, we aimed to provide (a) a comprehensive overview of the presence of viable but nonculturable bacteria and yet-to-be-cultivated cells in nature and their diverse awakening strategies in response to, among other factors, signalling extracellular metabolites (autoinducers, resuscitation promoting factors, and siderophores); (b) an outline of the trends in isolating unculturable bacteria; and (c) the potential applications of these hidden players in rehabilitation processes.
AbstractList Environmental biotechnology offers several promising techniques for the rehabilitation of polluted environments. The modern industrialized world presents novel challenges to the environmental sciences, requiring a constant development and deepening of knowledge to enable the characterization of novel pollutants and a better understanding of the bioremediation strategies as well as their limiting factors. The success of bioremediation depends heavily on the survival and activities of indigenous microbial communities and their interaction with introduced microorganisms. The majority of natural microbiomes remain uncultivated; therefore, further investigations focusing on their intrinsic functions in ecosystems are needed. In this review, we aimed to provide (a) a comprehensive overview of the presence of viable but nonculturable bacteria and yet-to-be-cultivated cells in nature and their diverse awakening strategies in response to, among other factors, signalling extracellular metabolites (autoinducers, resuscitation promoting factors, and siderophores); (b) an outline of the trends in isolating unculturable bacteria; and (c) the potential applications of these hidden players in rehabilitation processes.
Abstract Environmental biotechnology offers several promising techniques for the rehabilitation of polluted environments. The modern industrialized world presents novel challenges to the environmental sciences, requiring a constant development and deepening of knowledge to enable the characterization of novel pollutants and a better understanding of the bioremediation strategies as well as their limiting factors. The success of bioremediation depends heavily on the survival and activities of indigenous microbial communities and their interaction with introduced microorganisms. The majority of natural microbiomes remain uncultivated; therefore, further investigations focusing on their intrinsic functions in ecosystems are needed. In this review, we aimed to provide (a) a comprehensive overview of the presence of viable but nonculturable bacteria and yet-to-be-cultivated cells in nature and their diverse awakening strategies in response to, among other factors, signalling extracellular metabolites (autoinducers, resuscitation promoting factors, and siderophores); (b) an outline of the trends in isolating unculturable bacteria; and (c) the potential applications of these hidden players in rehabilitation processes.
Author Erdeiné Kis, Ágnes
Perei, Katalin
Rákhely, Gábor
Laczi, Krisztián
Kovács, Tamás
Szilágyi, Árpád
Vincze, György Erik
Bounedjoum, Naila
Bende, Gábor
Bodor, Attila
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  surname: Bodor
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  organization: Department of Biotechnology, University of Szeged, Institute of Environmental and Technological Sciences, University of Szeged, Institute of Biophysics, Biological Research Centre
– sequence: 2
  givenname: Naila
  surname: Bounedjoum
  fullname: Bounedjoum, Naila
  organization: Department of Biotechnology, University of Szeged, Institute of Environmental and Technological Sciences, University of Szeged
– sequence: 3
  givenname: György Erik
  surname: Vincze
  fullname: Vincze, György Erik
  organization: Department of Biotechnology, University of Szeged, Doctoral School of Environmental Sciences, University of Szeged
– sequence: 4
  givenname: Ágnes
  surname: Erdeiné Kis
  fullname: Erdeiné Kis, Ágnes
  organization: Department of Biotechnology, University of Szeged, Institute of Environmental and Technological Sciences, University of Szeged, Institute of Biophysics, Biological Research Centre
– sequence: 5
  givenname: Krisztián
  surname: Laczi
  fullname: Laczi, Krisztián
  organization: Department of Biotechnology, University of Szeged
– sequence: 6
  givenname: Gábor
  surname: Bende
  fullname: Bende, Gábor
  organization: Department of Biotechnology, University of Szeged, Doctoral School of Environmental Sciences, University of Szeged
– sequence: 7
  givenname: Árpád
  surname: Szilágyi
  fullname: Szilágyi, Árpád
  organization: Department of Biotechnology, University of Szeged
– sequence: 8
  givenname: Tamás
  surname: Kovács
  fullname: Kovács, Tamás
  organization: Department of Biotechnology, Nanophagetherapy Center, Enviroinvest Corporation
– sequence: 9
  givenname: Katalin
  surname: Perei
  fullname: Perei, Katalin
  organization: Department of Biotechnology, University of Szeged, Institute of Environmental and Technological Sciences, University of Szeged
– sequence: 10
  givenname: Gábor
  orcidid: 0000-0003-2557-3641
  surname: Rákhely
  fullname: Rákhely, Gábor
  email: rakhely.gabor@brc.mta.hu
  organization: Department of Biotechnology, University of Szeged, Institute of Environmental and Technological Sciences, University of Szeged, Institute of Biophysics, Biological Research Centre
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Issue 1
Keywords Viable but nonculturable bacteria
Environmental application of VBNC bacteria
Exploitation of microbial metabolic potential
Uncultured bacteria
Bacterial resuscitation
Language English
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PublicationTitle Reviews in environmental science and biotechnology
PublicationTitleAbbrev Rev Environ Sci Biotechnol
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  contributor:
    fullname: S Chen
– volume: 71
  start-page: 711
  year: 2017
  ident: 9522_CR99
  publication-title: Annu Rev Microbiol
  doi: 10.1146/annurev-micro-090816-093449
  contributor:
    fullname: J Overmann
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Snippet Environmental biotechnology offers several promising techniques for the rehabilitation of polluted environments. The modern industrialized world presents novel...
Abstract Environmental biotechnology offers several promising techniques for the rehabilitation of polluted environments. The modern industrialized world...
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SubjectTerms Atmospheric Protection/Air Quality Control/Air Pollution
Bacteria
Bioremediation
Biotechnology
Earth and Environmental Science
Environment
Environmental Engineering/Biotechnology
Environmental science
Limiting factors
Metabolites
Microbial activity
Microbiology
Microbiomes
Microorganisms
Pollutants
Polluted environments
Rehabilitation
Resuscitation
Review Paper
Siderophores
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Title Challenges of unculturable bacteria: environmental perspectives
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