LW-FQZip 2: a parallelized reference-based compression of FASTQ files - Huang, Zhi-An; Wen, Zhenkun; Deng, Qingjin; Chu, Ying; Sun, Yiwen; Zhu, Zexuan (BMC bioinformatics, 2017)
Keywords: Acids; Algorithms; Alignment; Archives & records; Archiving; Arithmetic; Arithmetic coding; Assembling; Assembly; Bioinformatics; Compression; Computer programs; Conserved sequence; Data compression; Data Compression - methods; Data transfer (computers); Data transmission; Deoxyribonucleic acid; DNA; DNA methylation; DNA sequencing; Filters; Fragmentation; Gene mapping; Genetic transformation; Genomes; High-Throughput Nucleotide Sequencing - methods; Homology; Mapping; Matching; Mathematical models; Metadata; Methods; Nucleotide sequence; Nucleotides; Palindromes; Porosity; Probability theory; Quality; Redundancy; Sequence Alignment - methods; Sequence Analysis, DNA - methods; Silver; Software; Statistical analysis; Streams; Sun; Weight reduction; Sequencing data compression; Reference- based compression; High-throughput sequencing; Sequence alignment