Transcriptional regulation of yeast phospholipid biosynthetic genes
The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes. The response of most phospholipid structural genes to inositol is now understood on a mechanistic level. The roles of specific activators and r...
Saved in:
| Published in | Biochimica et biophysica acta Vol. 1771; no. 3; pp. 310 - 321 |
|---|---|
| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
Netherlands
Elsevier B.V
01.03.2007
|
| Subjects | |
| Online Access | Get full text |
Cover
Loading…
| Abstract | The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes. The response of most phospholipid structural genes to inositol is now understood on a mechanistic level. The roles of specific activators and repressors are also well established. The knowledge of specific regulatory factors that bind the promoters of phospholipid structural genes serves as a foundation for understanding the role of chromatin modification complexes. Collectively, these findings present a complex picture for transcriptional regulation of the phospholipid biosynthetic genes. The
INO1 gene is an ideal example of the complexity of transcriptional control and continues to serve as a model for studying transcription in general. Furthermore, transcription of the regulatory genes is also subject to complex and essential regulation. In addition, databases resulting from a plethora of genome-wide studies have identified regulatory signals that control one of the essential phospholipid biosynthetic genes,
PIS1. These databases also provide significant clues for other regulatory signals that may affect phospholipid biosynthesis. Here, we have tried to present a complete summary of the transcription factors and mechanisms that regulate the phospholipid biosynthetic genes. |
|---|---|
| AbstractList | The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes. The response of most phospholipid structural genes to inositol is now understood on a mechanistic level. The roles of specific activators and repressors are also well established. The knowledge of specific regulatory factors that bind the promoters of phospholipid structural genes serves as a foundation for understanding the role of chromatin modification complexes. Collectively, these findings present a complex picture for transcriptional regulation of the phospholipid biosynthetic genes. The INO1 gene is an ideal example of the complexity of transcriptional control and continues to serve as a model for studying transcription in general. Furthermore, transcription of the regulatory genes is also subject to complex and essential regulation. In addition, databases resulting from a plethora of genome-wide studies have identified regulatory signals that control one of the essential phospholipid biosynthetic genes, PIS1. These databases also provide significant clues for other regulatory signals that may affect phospholipid biosynthesis. Here, we have tried to present a complete summary of the transcription factors and mechanisms that regulate the phospholipid biosynthetic genes.The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes. The response of most phospholipid structural genes to inositol is now understood on a mechanistic level. The roles of specific activators and repressors are also well established. The knowledge of specific regulatory factors that bind the promoters of phospholipid structural genes serves as a foundation for understanding the role of chromatin modification complexes. Collectively, these findings present a complex picture for transcriptional regulation of the phospholipid biosynthetic genes. The INO1 gene is an ideal example of the complexity of transcriptional control and continues to serve as a model for studying transcription in general. Furthermore, transcription of the regulatory genes is also subject to complex and essential regulation. In addition, databases resulting from a plethora of genome-wide studies have identified regulatory signals that control one of the essential phospholipid biosynthetic genes, PIS1. These databases also provide significant clues for other regulatory signals that may affect phospholipid biosynthesis. Here, we have tried to present a complete summary of the transcription factors and mechanisms that regulate the phospholipid biosynthetic genes. The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes. The response of most phospholipid structural genes to inositol is now understood on a mechanistic level. The roles of specific activators and repressors are also well established. The knowledge of specific regulatory factors that bind the promoters of phospholipid structural genes serves as a foundation for understanding the role of chromatin modification complexes. Collectively, these findings present a complex picture for transcriptional regulation of the phospholipid biosynthetic genes. The INO1 gene is an ideal example of the complexity of transcriptional control and continues to serve as a model for studying transcription in general. Furthermore, transcription of the regulatory genes is also subject to complex and essential regulation. In addition, databases resulting from a plethora of genome-wide studies have identified regulatory signals that control one of the essential phospholipid biosynthetic genes, PIS1. These databases also provide significant clues for other regulatory signals that may affect phospholipid biosynthesis. Here, we have tried to present a complete summary of the transcription factors and mechanisms that regulate the phospholipid biosynthetic genes. The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes. The response of most phospholipid structural genes to inositol is now understood on a mechanistic level. The roles of specific activators and repressors are also well established. The knowledge of specific regulatory factors that bind the promoters of phospholipid structural genes serves as a foundation for understanding the role of chromatin modification complexes. Collectively, these findings present a complex picture for transcriptional regulation of the phospholipid biosynthetic genes. The INO1 gene is an ideal example of the complexity of transcriptional control and continues to serve as a model for studying transcription in general. Furthermore, transcription of the regulatory genes is also subject to complex and essential regulation. In addition, databases resulting from a plethora of genome-wide studies have identified regulatory signals that control one of the essential phospholipid biosynthetic genes, PIS1. These databases also provide significant clues for other regulatory signals that may affect phospholipid biosynthesis. Here, we have tried to present a complete summary of the transcription factors and mechanisms that regulate the phospholipid biosynthetic genes. |
| Author | Hancock, Leandria C. Chen, Meng Lopes, John M. |
| Author_xml | – sequence: 1 givenname: Meng surname: Chen fullname: Chen, Meng – sequence: 2 givenname: Leandria C. surname: Hancock fullname: Hancock, Leandria C. – sequence: 3 givenname: John M. surname: Lopes fullname: Lopes, John M. email: jlopes@sun.science.wayne.edu |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/16854618$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFkMtKxDAUhoMo3t9ApCt3rUmbpK0LQQZvILjRdcjlRDN0mppkhHl7M44iuNBFSALf_x_Od4C2Rz8CQicEVwQTfj6vlJKDm6oaY15hVmHSbqF90rV9WXPSbed303Ul6Tuyhw5inGNMWNOwXbRHeMdoZvbR7CnIMergpuT8KIciwMtykOtP4W2xAhlTMb36mE8e5kyhnI-rMb1Ccrp4gRHiEdqxcohw_HUfoueb66fZXfnweHs_u3ooNa15Kk1NLW84rnmtDKGaWuCGMc0UJbbreWuJYp1sleS17XuKiTVgOau1wtpQ3hyis03vFPzbEmISCxc1DIMcwS-jaHFDOG1ZBk-_wKVagBFTcAsZVuJ77QzQDaCDjzGA_UGwWNsVc7GxK9Z2BWYi282xi18x7dKnqxSkG_4LX27CkBW9OwgiagejBuMC6CSMd38XfAA_1Zin |
| CitedBy_id | crossref_primary_10_1099_mic_0_030072_0 crossref_primary_10_1002_yea_3240 crossref_primary_10_1016_j_tibtech_2010_11_002 crossref_primary_10_1186_1752_0509_7_S3_S7 crossref_primary_10_3390_molecules29112606 crossref_primary_10_1146_annurev_biochem_060409_092229 crossref_primary_10_1093_nar_gks1458 crossref_primary_10_1016_j_chemphyslip_2013_12_013 crossref_primary_10_1016_j_virol_2014_10_005 crossref_primary_10_1021_acssynbio_6b00346 crossref_primary_10_1073_pnas_0708579105 crossref_primary_10_1194_jlr_R800043_JLR200 crossref_primary_10_1007_s00294_008_0197_7 crossref_primary_10_1007_s00438_009_0508_9 crossref_primary_10_1007_s00438_010_0589_5 crossref_primary_10_1074_jbc_M113_525766 crossref_primary_10_1074_jbc_M705777200 crossref_primary_10_1074_jbc_M800830200 crossref_primary_10_1128_MCB_01055_07 crossref_primary_10_1371_journal_pone_0116974 crossref_primary_10_1271_bbb_130164 crossref_primary_10_1534_g3_113_006601 crossref_primary_10_1146_annurev_phyto_121407_093958 crossref_primary_10_1007_s00294_009_0234_1 crossref_primary_10_1074_jbc_M113_493353 crossref_primary_10_1111_j_1365_2958_2011_07941_x crossref_primary_10_1002_yea_2924 crossref_primary_10_1002_yea_1757 crossref_primary_10_1016_j_jmb_2012_11_018 crossref_primary_10_1128_EC_00144_10 crossref_primary_10_1016_j_molp_2015_12_013 crossref_primary_10_1111_nph_17934 crossref_primary_10_3389_fgene_2020_00174 crossref_primary_10_1051_epjconf_202328601003 crossref_primary_10_1371_journal_pone_0136957 crossref_primary_10_1007_s00438_012_0692_x crossref_primary_10_1091_mbc_e11_05_0467 crossref_primary_10_1016_j_mib_2009_09_015 crossref_primary_10_1016_j_ymben_2014_10_001 crossref_primary_10_1534_genetics_111_130286 crossref_primary_10_1128_IAI_01514_07 crossref_primary_10_1007_s11906_007_0084_5 crossref_primary_10_1074_jbc_M110_100727 crossref_primary_10_1074_jbc_M110_117333 crossref_primary_10_1074_jbc_M802866200 crossref_primary_10_1093_jb_mvv105 crossref_primary_10_1016_j_bbalip_2019_03_006 crossref_primary_10_1016_j_myc_2013_02_001 crossref_primary_10_1016_j_jbior_2017_08_001 crossref_primary_10_1021_acs_jafc_4c05789 crossref_primary_10_1099_mic_0_025718_0 crossref_primary_10_1074_jbc_M705098200 crossref_primary_10_1021_jf4042134 crossref_primary_10_15252_embj_201591440 crossref_primary_10_3389_fbioe_2020_610936 crossref_primary_10_1016_j_ceb_2012_05_006 crossref_primary_10_1111_jnc_12978 crossref_primary_10_1007_s00203_018_1584_1 crossref_primary_10_1186_s12934_016_0488_5 crossref_primary_10_1111_j_1365_2958_2008_06506_x crossref_primary_10_1017_S1471068410000554 crossref_primary_10_1002_yea_1454 crossref_primary_10_1016_j_febslet_2012_04_022 |
| Cites_doi | 10.1038/ng1473 10.1074/jbc.M600425200 10.1016/S0021-9258(17)37299-X 10.1093/genetics/100.1.19 10.1093/emboj/cdg201 10.1073/pnas.92.21.9722 10.1128/MCB.18.9.5121 10.1046/j.1365-2958.1999.01390.x 10.1074/jbc.M206125200 10.1111/j.1365-2958.2004.04069.x 10.1093/genetics/137.1.55 10.1128/JB.184.1.250-265.2002 10.1016/S0021-9258(19)74506-2 10.1016/S0021-9258(17)35765-4 10.1073/pnas.81.12.3816 10.1074/jbc.M405156200 10.1038/24898 10.1093/jb/mvg068 10.1038/sj.emboj.7600646 10.1126/science.1062322 10.1073/pnas.250477697 10.1128/MCB.6.10.3320 10.1046/j.1365-2958.2003.03472.x 10.1016/S0092-8674(04)00448-9 10.1016/S0092-8674(00)81360-4 10.1126/science.284.5416.977 10.1016/S1389-1723(04)70220-0 10.1074/jbc.M105147200 10.1074/jbc.M004179200 10.1093/nar/20.6.1411 10.1016/S0021-9258(18)47744-7 10.1016/S0021-9258(19)84740-3 10.1128/MCB.15.6.2955 10.1016/S0092-8674(00)80217-2 10.1074/jbc.270.42.25087 10.1038/sj.emboj.7600577 10.1074/jbc.271.43.26596 10.1128/MCB.20.2.429-440.2000 10.1016/S0021-9258(17)45283-5 10.1093/nar/28.7.1499 10.1111/j.1365-2958.2004.04499.x 10.1074/jbc.270.11.6071 10.1093/genetics/162.1.29 10.1016/S0959-437X(00)00068-X 10.1038/33952 10.1038/35020123 10.1074/jbc.M305251200 10.1016/j.bbaexp.2003.10.014 10.1128/JB.182.10.2746-2752.2000 10.1111/j.1432-1033.1982.tb06703.x 10.1128/EC.4.3.604-614.2005 10.1111/j.1432-1033.1984.tb08366.x 10.1146/annurev.biochem.69.1.399 10.1016/S0092-8674(00)00080-5 10.1093/nar/28.22.4460 10.1002/(SICI)1097-0061(199907)15:10A<843::AID-YEA424>3.0.CO;2-M 10.1016/S0005-2760(97)00103-3 10.1128/MCB.15.3.1709 10.1046/j.1365-2958.2003.03501.x 10.1042/BJ20051726 10.1093/genetics/120.4.909 10.1038/nature02800 10.1016/0014-5793(95)00818-T 10.1016/S0959-437X(05)80275-8 10.1128/MCB.22.13.4607-4621.2002 10.1016/S0021-9258(19)36940-6 10.1046/j.1365-2958.2003.03641.x 10.1128/jb.172.4.2005-2012.1990 10.1074/jbc.272.17.11215 10.1128/jb.179.18.5843-5848.1997 10.1128/MCB.7.1.167 10.1002/(SICI)1097-0061(19960615)12:7<653::AID-YEA953>3.0.CO;2-T 10.1105/tpc.151140 10.1128/MCB.21.19.6450-6460.2001 10.1093/nar/27.22.4391 10.1126/science.1078068 10.1128/MCB.21.17.5710-5722.2001 10.1073/pnas.93.25.14503 10.1128/jb.170.10.4727-4731.1988 10.1146/annurev.cellbio.17.1.701 10.1007/s00294-005-0021-6 10.1038/sj.emboj.7600672 10.1093/nar/28.16.3160 10.1074/jbc.M402047200 10.1046/j.1365-2958.2003.03284.x 10.1007/s002940050231 10.1016/S0092-8674(00)00134-3 10.1016/j.mrfmmm.2004.06.056 10.1007/s002940100186 10.1093/nar/24.7.1322 10.1016/S0955-0674(00)00219-2 10.1074/jbc.M411770200 10.1128/MCB.14.1.348 10.1074/jbc.M405704200 10.1016/S0021-9258(18)61277-3 10.1016/S0021-9258(19)61972-1 10.1074/jbc.M601612200 10.1128/JB.126.1.232-242.1976 10.1093/nar/19.14.3987 10.1046/j.1365-2958.2001.02495.x 10.1093/nar/23.11.1964 10.1002/pro.5560040918 10.1038/nature04098 10.1534/genetics.104.038075 10.1074/jbc.M513064200 10.1016/S0021-9258(17)36612-7 10.1034/j.1600-0854.2000.010604.x 10.1042/BST0331150 10.1002/yea.879 10.1093/genetics/98.3.491 10.1099/00221287-144-10-2739 10.1093/genetics/136.2.475 10.1126/science.1075090 10.1074/jbc.M300132200 10.1128/JB.183.17.4985-4993.2001 10.1093/nar/23.8.1426 10.1046/j.1365-2958.2000.01886.x 10.1016/S0092-8674(00)80740-0 10.1128/JB.181.24.7409-7413.1999 10.1038/35073063 10.1128/MCB.13.1.649 10.1128/jb.173.24.7992-7995.1991 10.1093/nar/20.12.3253 10.1146/annurev.cellbio.15.1.291 10.1016/S0092-8674(00)80835-1 10.1038/sj.emboj.7600233 10.1038/415141a 10.1016/S0021-9258(19)50785-2 10.1016/S0092-8674(00)80369-4 10.1093/genetics/122.2.317 10.1074/jbc.M505881200 10.1111/j.1365-2958.2001.02330.x 10.1016/0092-8674(91)90268-4 10.1146/annurev.genet.35.102401.090720 10.1128/MCB.17.11.6212 10.1093/nar/23.2.230 10.1091/mbc.8.9.1805 10.1371/journal.pbio.0020342 10.1093/nar/27.17.3518 10.1128/JB.154.1.304-311.1983 10.1126/science.1096083 10.1146/annurev.bi.61.070192.001105 |
| ContentType | Journal Article |
| Copyright | 2006 Elsevier B.V. |
| Copyright_xml | – notice: 2006 Elsevier B.V. |
| DBID | AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 |
| DOI | 10.1016/j.bbalip.2006.05.017 |
| DatabaseName | CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic |
| DatabaseTitleList | MEDLINE - Academic MEDLINE |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Anatomy & Physiology Chemistry Biology |
| EISSN | 1879-2618 |
| EndPage | 321 |
| ExternalDocumentID | 16854618 10_1016_j_bbalip_2006_05_017 S1388198106001648 |
| Genre | Research Support, U.S. Gov't, Non-P.H.S Review Research Support, Non-U.S. Gov't Journal Article |
| GroupedDBID | --- --K --M .~1 0R~ 1B1 1RT 1~. 1~5 23N 3O- 4.4 457 4G. 53G 5GY 5VS 7-5 71M 8P~ AACTN AAEDT AAEDW AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AAXUO ABEFU ABFNM ABGSF ABMAC ABUDA ABXDB ABYKQ ACDAQ ACIUM ACRLP ADBBV ADEZE ADMUD ADUVX AEBSH AEHWI AEKER AFKWA AFTJW AFXIZ AGHFR AGRDE AGUBO AGYEJ AIEXJ AIKHN AITUG AJBFU AJOXV ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ASPBG AVWKF AXJTR AZFZN BKOJK BLXMC CS3 DOVZS EBS EFJIC EFLBG EJD EO8 EO9 EP2 EP3 FDB FEDTE FGOYB FIRID FNPLU FYGXN G-Q GBLVA HVGLF HZ~ IHE J1W KOM M41 MO0 N9A O-L O9- OAUVE OZT P-8 P-9 PC. Q38 R2- ROL RPZ SDF SDG SDP SES SEW SSU SSZ T5K XJT XPP ~G- AAHBH AATTM AAXKI AAYWO AAYXX ABWVN ACRPL ADNMO AEIPS AFJKZ AGCQF AGQPQ AGRNS AIIUN ANKPU BNPGV CITATION SSH -~X .55 .GJ 5RE AAYJJ ABJNI AFFNX AHHHB AI. AKRWK CGR CUY CVF ECM EIF F5P G-2 HLW H~9 K-O LX3 MVM NPM OHT PKN RIG SBG TWZ UHS VH1 WH7 WUQ X7M Y6R YYP ZE2 ZGI ~KM 7X8 |
| ID | FETCH-LOGICAL-c426t-d24f6360262bd14c4fe6d55c5b41f8967f1b58a7ba62f99401fdef652cb0cd463 |
| IEDL.DBID | AIKHN |
| ISSN | 1388-1981 0006-3002 |
| IngestDate | Thu Jul 10 17:47:25 EDT 2025 Wed Feb 19 01:51:16 EST 2025 Tue Jul 01 02:06:39 EDT 2025 Thu Apr 24 23:03:33 EDT 2025 Fri Feb 23 02:24:46 EST 2024 |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 3 |
| Keywords | Regulators Activators Auto-regulation Transcription Repressors INO1 Chromatin remodelling Basic Helix-Loop-Helix Regulation Chromatin modification |
| Language | English |
| License | https://www.elsevier.com/tdm/userlicense/1.0 |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c426t-d24f6360262bd14c4fe6d55c5b41f8967f1b58a7ba62f99401fdef652cb0cd463 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 ObjectType-Review-3 content type line 23 |
| PMID | 16854618 |
| PQID | 70316475 |
| PQPubID | 23479 |
| PageCount | 12 |
| ParticipantIDs | proquest_miscellaneous_70316475 pubmed_primary_16854618 crossref_primary_10_1016_j_bbalip_2006_05_017 crossref_citationtrail_10_1016_j_bbalip_2006_05_017 elsevier_sciencedirect_doi_10_1016_j_bbalip_2006_05_017 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2007-03-01 |
| PublicationDateYYYYMMDD | 2007-03-01 |
| PublicationDate_xml | – month: 03 year: 2007 text: 2007-03-01 day: 01 |
| PublicationDecade | 2000 |
| PublicationPlace | Netherlands |
| PublicationPlace_xml | – name: Netherlands |
| PublicationTitle | Biochimica et biophysica acta |
| PublicationTitleAlternate | Biochim Biophys Acta |
| PublicationYear | 2007 |
| Publisher | Elsevier B.V |
| Publisher_xml | – name: Elsevier B.V |
| References | Jackson, Lopes (bib39) 1996; 24 Lee, Rinaldi, Robert, Odom, Bar-Joseph, Gerber, Hannett, Harbison, Thompson, Simon, Zeitlinger, Jennings, Murray, Gordon, Ren, Wyrick, Tagne, Volkert, Fraenkel, Gifford, Young (bib120) 2002; 298 Han, Han, Iwanyshyn, Carman (bib86) 2005; 280 Clancey, Chang, Dowhan (bib106) 1993; 268 Robinson, Koepke, Kharodawala, Lopes (bib13) 2000; 28 Nikawa, Yamashita (bib79) 1984; 143 Sidrauski, Walter (bib67) 1997; 90 Schröder, Kaufman (bib61) 2005; 569 Ju, Greenberg (bib71) 2003; 49 Cok, Martin, Gordon (bib129) 1998; 23 Pollard, Peterson (bib50) 1997; 17 Bachhawat, Ouyang, Henry (bib6) 1995; 270 Ashburner, Lopes (bib127) 1995; 92 Culbertson, Donahue, Henry (bib3) 1976; 126 Sreenivas, Carman (bib33) 2003; 278 Fazzio, Kooperberg, Goldmark, Neal, Basom, Delrow, Tsukiyama (bib46) 2001; 21 Dietz, Heyken, Hoppen, Geburtig, Schüller (bib16) 2003; 48 Miyake, Reese, Loch, Auble, Li (bib117) 2004; 279 Eiznhamer, Ashburner, Jackson, Gardenour, Lopes (bib130) 2001; 39 Purdue, Lazarow (bib90) 2001; 17 Hudak, Lopes, Henry (bib37) 1994; 136 Robinson, Lopes (bib136) 2000; 182 Elkhaimi, Kaadige, Kamath, Jackson, Biliran, Lopes (bib36) 2000; 28 Slekar, Henry (bib44) 1995; 23 Griac (bib69) 1997; 179 Nikawa, Kodaki, Yamashita (bib76) 1987; 262 Massari, Murre (bib137) 2000; 20 Wagner, Dietz, Wittman, Albrecht, Schüller (bib30) 2001; 41 Kadosh, Struhl (bib41) 1998; 18 Patil, Walter (bib62) 2001; 13 Cox, Chapman, Walter (bib65) 1997; 8 Koipally, Ashburner, Bachhawat, Gill, Hung, Henry, Lopes (bib7) 1996; 12 Titorenko, Rachubinski (bib93) 2001; 2 Swift, McGraw (bib53) 1995; 23 Hirsch, Henry (bib5) 1986; 6 Lo, Gamache, Henry, Yang, Pillus, Berger (bib21) 2005; 24 Subramani, Koller, Snyder (bib91) 2000; 69 Jesch, Zhao, Wells, Henry (bib63) 2005; 280 Loewen, Gaspar, Jesch, Delon, Ktistakis, Henry, Levine (bib25) 2004; 304 Vaden, Ding, Peterson, Greenberg (bib74) 2001; 276 Hosaka, Murakami, Kodaki, Nikawa, Yamashita (bib124) 1990; 173 Rundlett, Carmen, Suka, Turner, Grunstein (bib43) 1998; 392 Travers, Patil, Wodicka, Lockhart, Weissman, Walter (bib60) 2000; 101 Nikawa, Yamashita (bib80) 1997; 1348 Komeili, O'Shea (bib141) 2001; 35 Cox, Walter (bib66) 1996; 87 Kadosh, Struhl (bib40) 1997; 89 Ter Linde, De Steensma (bib88) 2002; 19 Jiranek, Graves, Henry (bib70) 1998; 144 Miller, Lopes (bib133) 2001; 39 Nikoloff, Henry (bib11) 1994; 269 Dasgupta, Juedes, Sprouse, Auble (bib57) 2005; 24 Deckert, Khalaf, Hwang, Zitomer (bib95) 1999; 27 Kagiwada, Zen (bib24) 2003; 133 Kaadige, Lopes (bib29) 2006; 49 Anderson, Steber, Esposito, Coleman (bib114) 1995; 4 Mukherjee, Berger, Jona, Wang, Muzzey, Snyder, Young, Bulyk (bib116) 2004; 36 Kaffman, O'Shea (bib140) 1999; 15 Summers, Letts, McGraw, Henry (bib111) 1988; 120 Kersting, Choi, Carman (bib125) 2004; 279 Hoppe, Matuschewski, Rape, Schenkler, Ulrich, Jentsch (bib101) 2000; 102 Goldmark, Fazzio, Estep, Church, Tsukiyama (bib45) 2000; 103 Bowdish, Yuan, Mitchell (bib113) 1995; 15 Gardocki, Bakewell, Kamath, Robinson, Borovicka, Lopes (bib84) 2005; 4 Gardenour, Levy, Lopes (bib28) 2004; 52 Gardocki, Lopes (bib85) 2003; 278 Schröder, Clark, Liu, Kaufman (bib68) 2004; 23 Shirra, Patton-Vogt, Ulrich, Liuta-Tehlivets, Kohlwein, Henry, Arndt (bib18) 2001; 21 Anderson, Lopes (bib83) 1996; 271 Ding, Greenberg (bib75) 2003; 47 Murray, Greenberg (bib4) 2000; 36 Bhoite, Allen, Garcia, Thomas, Gregory, Voth, Whelihan, Rolfes, Stillman (bib99) 2002; 277 Alber (bib23) 1992; 2 Mellor, Morillon (bib56) 2004; 1677 Brickner, Walter (bib17) 2004; 2 Schwank, Hoffman, Schüller (bib134) 1997; 31 Nikoloff, McGraw, Henry (bib12) 1992; 20 Morash, McMaster, Hjelmstad, Bell (bib144) 1994; 269 Cosma, Tanaka, Nasmyth (bib51) 1999; 97 Iwanyshyn, Han, Carman (bib96) 2004; 279 Shen, Xiao, Ranallo, Wu, Wu (bib54) 2003; 299 Mead, Bruning, Gill, Steiner, Acton, Vershon (bib98) 2002; 22 Bailis, Lopes, Kohlwein, Henry (bib105) 1992; 20 Kodaki, Nikawa, Hosaka, Yamashita (bib104) 1991; 173 Schüller, Richter, Hoffmann, Ebbert, Schweizer (bib8) 1995; 370 Klig, Henry (bib2) 1984; 81 Bernstein, Tong, Schreiber (bib38) 2000; 97 Trotter, Pedretti, Yates, Voelker (bib108) 1995; 270 Greenberg, Reiner, Henry (bib22) 1982; 100 Lo, Duggan, Emre, Belotserkovskya, Lane, Shiekhattar, Berger (bib20) 2001; 293 Kwast, Lai, Menda, James, Aref, Burke (bib87) 2002; 184 Lang, Reeder (bib121) 1993; 13 Loewen, Roy, Levine (bib26) 2003; 22 Harbison, Gordon, Lee, Rinaldi, Macisaac, Danford, Hannett, Tagne, Reynolds, Yoo, Jennings, Zeitlinger, Pokholok, Kellis, Rolfe, Takusagawa, Lander, Gifford, Fraenkel, Young (bib119) 2004; 431 Komeili, O'Shea (bib143) 1999; 284 Chang, Jones, Henry (bib64) 2002; 162 Donahue, Henry (bib1) 1981; 98 Peterson, Workman (bib52) 2000; 10 Sugiyama, Nikawa (bib48) 2001; 183 Fischl, Homann, Poole, Carman (bib82) 1986; 261 Peterson, Kruger, Herskowitz (bib49) 1991; 64 Lopes, Henry (bib10) 1991; 19 McGraw, Henry (bib110) 1989; 122 Trotter, Pedretti, Voelker (bib107) 1993; 268 Kaffman, Rank, O'Neill, Huang, O'Shea (bib142) 1998; 396 Nikawa, Yamashita (bib78) 1982; 125 Robinson, Lopes (bib14) 2000; 28 Rundlett, Carmen, Kobayashi, Bavykin, Turner, Grunstein (bib42) 1996; 93 Kuo, Grayhack (bib97) 1994; 14 Ambroziak, Henry (bib9) 1994; 269 Schwank, Ebbert, Rautenstrauss, Schweizer, Schüller (bib15) 1995; 23 Shirra, Rogers, Alexander, Arndt (bib19) 2005; 169 Morrow, Ju, Warner (bib122) 1990; 265 Kodaki, Hosaka, Nikawa, Yamashita (bib109) 1987; 262 Nikawa, Kamiuto (bib139) 2004; 97 Ter Linde, Liang, Davis, De Steensma, Van Dijken, Pronk (bib89) 1999; 181 Kersting, Carman (bib126) 2006; 281 Bailey, Martin, Toledo-Ortiz, Quail, Huq, Heirn, Jakoby, Werber, Weisshaar (bib138) 2003; 15 Terlecky, Fransen (bib92) 2000; 1 Kennedy, Weiss (bib123) 1956; 222 Bailis, Poole, Carman, Henry (bib103) 1987; 7 Chang, Carman (bib32) 2006; 281 van den Bosch, Schutgens, Wanders, Tager (bib94) 1992; 61 Wagner, Blank, Strohmann, Schüller (bib35) 1999; 15 Kodaki, Hosaka, Nikawa, Yamashita (bib112) 1991; 109 Nikawa, Kodaki, Yamashita (bib77) 1988; 170 Carman (bib115) 2005; 33 Gavin, Bosche, Krause, Grandi, Marzioch, Bauer, Schultz, Rick, Michon, Cruciat, Remor, Hofert, Schelder, Brajenovic, Ruffner, Merino, Klein, Hudak, Dickson, Rudi, Gnau, Bauch, Bastuck, Huhse, Leutwein, Heurtier, Copley, Edelmann, Querfurth, Rybin, Drewes, Raida, Bouwmeester, Bork, Seraphin, Kuster, Neubauer, Superti-Furga (bib27) 2002; 415 Ebbert, Birkmann, Schüller (bib55) 1999; 32 Santos-Rosa, Leung, Grimsey, Peak-Chew, Siniossoglou (bib58) 2005; 24 Han, Wu, Carman (bib59) 2006; 281 Lipford, Smith, Chi, Deshaies (bib73) 2005; 438 Sreenivas, Villa-Garcia, Henry, Carman (bib34) 2001; 276 Shen, Mizuguchi, Hamiche, Wu (bib47) 2000; 406 Fischl, Carman (bib81) 1983; 154 Heyken, Repenning, Kumme, Schuller (bib31) 2005; 56 Lamping, Lückl, Paltauf, Henry, Kohlwein (bib72) 1995; 137 Stukey, McDonough, Martin (bib102) 1989; 264 Kaliszewski, Ferreira, Gajewska, Szkopinska, Berges, Zoladek (bib100) 2006; 395 Ashburner, Lopes (bib128) 1995; 15 Casolari, Brown, Komili, West, Hieronymus, Silver (bib118) 2004; 117 Kaadige, Lopes (bib132) 2003; 48 Grauslund, Lopes, Rønnow (bib131) 1999; 27 Shen, Dowhan (bib135) 1997; 272 Bailis (10.1016/j.bbalip.2006.05.017_bib105) 1992; 20 Ashburner (10.1016/j.bbalip.2006.05.017_bib127) 1995; 92 Culbertson (10.1016/j.bbalip.2006.05.017_bib3) 1976; 126 Ding (10.1016/j.bbalip.2006.05.017_bib75) 2003; 47 Lee (10.1016/j.bbalip.2006.05.017_bib120) 2002; 298 Shirra (10.1016/j.bbalip.2006.05.017_bib19) 2005; 169 Kaffman (10.1016/j.bbalip.2006.05.017_bib142) 1998; 396 Slekar (10.1016/j.bbalip.2006.05.017_bib44) 1995; 23 Hudak (10.1016/j.bbalip.2006.05.017_bib37) 1994; 136 Fischl (10.1016/j.bbalip.2006.05.017_bib81) 1983; 154 Kennedy (10.1016/j.bbalip.2006.05.017_bib123) 1956; 222 Kersting (10.1016/j.bbalip.2006.05.017_bib125) 2004; 279 Ter Linde (10.1016/j.bbalip.2006.05.017_bib88) 2002; 19 Shen (10.1016/j.bbalip.2006.05.017_bib47) 2000; 406 Kwast (10.1016/j.bbalip.2006.05.017_bib87) 2002; 184 Heyken (10.1016/j.bbalip.2006.05.017_bib31) 2005; 56 Mead (10.1016/j.bbalip.2006.05.017_bib98) 2002; 22 Gardocki (10.1016/j.bbalip.2006.05.017_bib85) 2003; 278 Chang (10.1016/j.bbalip.2006.05.017_bib64) 2002; 162 Komeili (10.1016/j.bbalip.2006.05.017_bib141) 2001; 35 Cox (10.1016/j.bbalip.2006.05.017_bib65) 1997; 8 Kaadige (10.1016/j.bbalip.2006.05.017_bib29) 2006; 49 Jiranek (10.1016/j.bbalip.2006.05.017_bib70) 1998; 144 Nikawa (10.1016/j.bbalip.2006.05.017_bib80) 1997; 1348 Murray (10.1016/j.bbalip.2006.05.017_bib4) 2000; 36 Casolari (10.1016/j.bbalip.2006.05.017_bib118) 2004; 117 Shen (10.1016/j.bbalip.2006.05.017_bib54) 2003; 299 Kodaki (10.1016/j.bbalip.2006.05.017_bib109) 1987; 262 Patil (10.1016/j.bbalip.2006.05.017_bib62) 2001; 13 Lo (10.1016/j.bbalip.2006.05.017_bib20) 2001; 293 Ebbert (10.1016/j.bbalip.2006.05.017_bib55) 1999; 32 Robinson (10.1016/j.bbalip.2006.05.017_bib14) 2000; 28 Griac (10.1016/j.bbalip.2006.05.017_bib69) 1997; 179 Gardocki (10.1016/j.bbalip.2006.05.017_bib84) 2005; 4 Pollard (10.1016/j.bbalip.2006.05.017_bib50) 1997; 17 Kadosh (10.1016/j.bbalip.2006.05.017_bib41) 1998; 18 Bhoite (10.1016/j.bbalip.2006.05.017_bib99) 2002; 277 Deckert (10.1016/j.bbalip.2006.05.017_bib95) 1999; 27 Klig (10.1016/j.bbalip.2006.05.017_bib2) 1984; 81 Kadosh (10.1016/j.bbalip.2006.05.017_bib40) 1997; 89 Travers (10.1016/j.bbalip.2006.05.017_bib60) 2000; 101 van den Bosch (10.1016/j.bbalip.2006.05.017_bib94) 1992; 61 Kaffman (10.1016/j.bbalip.2006.05.017_bib140) 1999; 15 Santos-Rosa (10.1016/j.bbalip.2006.05.017_bib58) 2005; 24 Carman (10.1016/j.bbalip.2006.05.017_bib115) 2005; 33 Anderson (10.1016/j.bbalip.2006.05.017_bib83) 1996; 271 Bailey (10.1016/j.bbalip.2006.05.017_bib138) 2003; 15 Nikoloff (10.1016/j.bbalip.2006.05.017_bib11) 1994; 269 Komeili (10.1016/j.bbalip.2006.05.017_bib143) 1999; 284 Miyake (10.1016/j.bbalip.2006.05.017_bib117) 2004; 279 Sugiyama (10.1016/j.bbalip.2006.05.017_bib48) 2001; 183 Alber (10.1016/j.bbalip.2006.05.017_bib23) 1992; 2 Schröder (10.1016/j.bbalip.2006.05.017_bib68) 2004; 23 Grauslund (10.1016/j.bbalip.2006.05.017_bib131) 1999; 27 Robinson (10.1016/j.bbalip.2006.05.017_bib136) 2000; 182 Sreenivas (10.1016/j.bbalip.2006.05.017_bib33) 2003; 278 Subramani (10.1016/j.bbalip.2006.05.017_bib91) 2000; 69 Anderson (10.1016/j.bbalip.2006.05.017_bib114) 1995; 4 Mellor (10.1016/j.bbalip.2006.05.017_bib56) 2004; 1677 Kaadige (10.1016/j.bbalip.2006.05.017_bib132) 2003; 48 Hosaka (10.1016/j.bbalip.2006.05.017_bib124) 1990; 173 Chang (10.1016/j.bbalip.2006.05.017_bib32) 2006; 281 Kagiwada (10.1016/j.bbalip.2006.05.017_bib24) 2003; 133 Rundlett (10.1016/j.bbalip.2006.05.017_bib42) 1996; 93 Morrow (10.1016/j.bbalip.2006.05.017_bib122) 1990; 265 Gardenour (10.1016/j.bbalip.2006.05.017_bib28) 2004; 52 Cox (10.1016/j.bbalip.2006.05.017_bib66) 1996; 87 Fischl (10.1016/j.bbalip.2006.05.017_bib82) 1986; 261 Han (10.1016/j.bbalip.2006.05.017_bib59) 2006; 281 Elkhaimi (10.1016/j.bbalip.2006.05.017_bib36) 2000; 28 Miller (10.1016/j.bbalip.2006.05.017_bib133) 2001; 39 Nikawa (10.1016/j.bbalip.2006.05.017_bib77) 1988; 170 Kersting (10.1016/j.bbalip.2006.05.017_bib126) 2006; 281 Kodaki (10.1016/j.bbalip.2006.05.017_bib112) 1991; 109 Bernstein (10.1016/j.bbalip.2006.05.017_bib38) 2000; 97 Dietz (10.1016/j.bbalip.2006.05.017_bib16) 2003; 48 Nikawa (10.1016/j.bbalip.2006.05.017_bib76) 1987; 262 Lang (10.1016/j.bbalip.2006.05.017_bib121) 1993; 13 Peterson (10.1016/j.bbalip.2006.05.017_bib49) 1991; 64 Schwank (10.1016/j.bbalip.2006.05.017_bib134) 1997; 31 Schwank (10.1016/j.bbalip.2006.05.017_bib15) 1995; 23 Peterson (10.1016/j.bbalip.2006.05.017_bib52) 2000; 10 Ju (10.1016/j.bbalip.2006.05.017_bib71) 2003; 49 Schüller (10.1016/j.bbalip.2006.05.017_bib8) 1995; 370 Hoppe (10.1016/j.bbalip.2006.05.017_bib101) 2000; 102 Wagner (10.1016/j.bbalip.2006.05.017_bib30) 2001; 41 Shirra (10.1016/j.bbalip.2006.05.017_bib18) 2001; 21 Bowdish (10.1016/j.bbalip.2006.05.017_bib113) 1995; 15 Lopes (10.1016/j.bbalip.2006.05.017_bib10) 1991; 19 McGraw (10.1016/j.bbalip.2006.05.017_bib110) 1989; 122 Gavin (10.1016/j.bbalip.2006.05.017_bib27) 2002; 415 Schröder (10.1016/j.bbalip.2006.05.017_bib61) 2005; 569 Jackson (10.1016/j.bbalip.2006.05.017_bib39) 1996; 24 Sidrauski (10.1016/j.bbalip.2006.05.017_bib67) 1997; 90 Donahue (10.1016/j.bbalip.2006.05.017_bib1) 1981; 98 Mukherjee (10.1016/j.bbalip.2006.05.017_bib116) 2004; 36 Jesch (10.1016/j.bbalip.2006.05.017_bib63) 2005; 280 Shen (10.1016/j.bbalip.2006.05.017_bib135) 1997; 272 Cosma (10.1016/j.bbalip.2006.05.017_bib51) 1999; 97 Wagner (10.1016/j.bbalip.2006.05.017_bib35) 1999; 15 Trotter (10.1016/j.bbalip.2006.05.017_bib107) 1993; 268 Ter Linde (10.1016/j.bbalip.2006.05.017_bib89) 1999; 181 Loewen (10.1016/j.bbalip.2006.05.017_bib25) 2004; 304 Lipford (10.1016/j.bbalip.2006.05.017_bib73) 2005; 438 Summers (10.1016/j.bbalip.2006.05.017_bib111) 1988; 120 Kaliszewski (10.1016/j.bbalip.2006.05.017_bib100) 2006; 395 Terlecky (10.1016/j.bbalip.2006.05.017_bib92) 2000; 1 Koipally (10.1016/j.bbalip.2006.05.017_bib7) 1996; 12 Hirsch (10.1016/j.bbalip.2006.05.017_bib5) 1986; 6 Kuo (10.1016/j.bbalip.2006.05.017_bib97) 1994; 14 Fazzio (10.1016/j.bbalip.2006.05.017_bib46) 2001; 21 Swift (10.1016/j.bbalip.2006.05.017_bib53) 1995; 23 Lo (10.1016/j.bbalip.2006.05.017_bib21) 2005; 24 Nikawa (10.1016/j.bbalip.2006.05.017_bib139) 2004; 97 Robinson (10.1016/j.bbalip.2006.05.017_bib13) 2000; 28 Vaden (10.1016/j.bbalip.2006.05.017_bib74) 2001; 276 Loewen (10.1016/j.bbalip.2006.05.017_bib26) 2003; 22 Bachhawat (10.1016/j.bbalip.2006.05.017_bib6) 1995; 270 Brickner (10.1016/j.bbalip.2006.05.017_bib17) 2004; 2 Stukey (10.1016/j.bbalip.2006.05.017_bib102) 1989; 264 Morash (10.1016/j.bbalip.2006.05.017_bib144) 1994; 269 Nikawa (10.1016/j.bbalip.2006.05.017_bib78) 1982; 125 Greenberg (10.1016/j.bbalip.2006.05.017_bib22) 1982; 100 Goldmark (10.1016/j.bbalip.2006.05.017_bib45) 2000; 103 Massari (10.1016/j.bbalip.2006.05.017_bib137) 2000; 20 Sreenivas (10.1016/j.bbalip.2006.05.017_bib34) 2001; 276 Ashburner (10.1016/j.bbalip.2006.05.017_bib128) 1995; 15 Purdue (10.1016/j.bbalip.2006.05.017_bib90) 2001; 17 Bailis (10.1016/j.bbalip.2006.05.017_bib103) 1987; 7 Nikawa (10.1016/j.bbalip.2006.05.017_bib79) 1984; 143 Titorenko (10.1016/j.bbalip.2006.05.017_bib93) 2001; 2 Clancey (10.1016/j.bbalip.2006.05.017_bib106) 1993; 268 Ambroziak (10.1016/j.bbalip.2006.05.017_bib9) 1994; 269 Han (10.1016/j.bbalip.2006.05.017_bib86) 2005; 280 Trotter (10.1016/j.bbalip.2006.05.017_bib108) 1995; 270 Dasgupta (10.1016/j.bbalip.2006.05.017_bib57) 2005; 24 Rundlett (10.1016/j.bbalip.2006.05.017_bib43) 1998; 392 Kodaki (10.1016/j.bbalip.2006.05.017_bib104) 1991; 173 Iwanyshyn (10.1016/j.bbalip.2006.05.017_bib96) 2004; 279 Cok (10.1016/j.bbalip.2006.05.017_bib129) 1998; 23 Nikoloff (10.1016/j.bbalip.2006.05.017_bib12) 1992; 20 Eiznhamer (10.1016/j.bbalip.2006.05.017_bib130) 2001; 39 Lamping (10.1016/j.bbalip.2006.05.017_bib72) 1995; 137 Harbison (10.1016/j.bbalip.2006.05.017_bib119) 2004; 431 |
| References_xml | – volume: 1 start-page: 465 year: 2000 end-page: 473 ident: bib92 article-title: How peroxisomes arise publication-title: Traffic – volume: 81 start-page: 3816 year: 1984 end-page: 3820 ident: bib2 article-title: Isolation of the yeast publication-title: Proc. Natl. Acad. Sci. U. S. A. – volume: 4 start-page: 604 year: 2005 end-page: 614 ident: bib84 article-title: Genomic analysis of PIS1 gene expression publication-title: Euk. Cell – volume: 137 start-page: 55 year: 1995 end-page: 65 ident: bib72 article-title: Isolation and characterization of a mutant publication-title: Genetics – volume: 122 start-page: 317 year: 1989 end-page: 330 ident: bib110 article-title: Mutations in the publication-title: Genetics – volume: 31 start-page: 462 year: 1997 end-page: 468 ident: bib134 article-title: Influence of gene dosage and autoregulation of the regulatory genes publication-title: Curr. Genet. – volume: 39 start-page: 1395 year: 2001 end-page: 1405 ident: bib130 article-title: Expression of the publication-title: Mol. Microbiol. – volume: 293 start-page: 1142 year: 2001 end-page: 1146 ident: bib20 article-title: Snf1-a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription publication-title: Science – volume: 24 start-page: 1931 year: 2005 end-page: 1941 ident: bib58 article-title: The yeast lipin Smp2 couples phospholipid biosynthesis to nuclear membrane growth publication-title: EMBO J. – volume: 269 start-page: 15344 year: 1994 end-page: 15349 ident: bib9 publication-title: J. Biol. Chem. – volume: 281 start-page: 4754 year: 2006 end-page: 4761 ident: bib32 article-title: Casein kinase II phosphorylation of the yeast phospholipid synthesis transcription factor publication-title: J. Biol. Chem. – volume: 406 start-page: 541 year: 2000 end-page: 544 ident: bib47 article-title: A chromatin remodelling complex involved in transcription and DNA processing publication-title: Nature – volume: 184 start-page: 250 year: 2002 end-page: 265 ident: bib87 article-title: Genomic analyses of anaerobically induced genes in publication-title: J. Bacteriol. – volume: 2 start-page: 357 year: 2001 end-page: 368 ident: bib93 article-title: The life cycle of the peroxisome publication-title: Nat. Rev., Mol. Cell Biol. – volume: 2 start-page: 205 year: 1992 end-page: 210 ident: bib23 article-title: Structure of the leucine zipper publication-title: Curr. Opin. Genet. Dev. – volume: 28 start-page: 3160 year: 2000 end-page: 3167 ident: bib36 article-title: Combinatorial regulation of phospholipid biosynthetic gene expression by the publication-title: Nucleic Acids Res. – volume: 24 start-page: 1717 year: 2005 end-page: 1729 ident: bib57 article-title: Mot1-mediated control of transcription complex assembly and activity publication-title: EMBO J. – volume: 52 start-page: 1271 year: 2004 end-page: 1280 ident: bib28 article-title: Identification of novel dominant publication-title: Mol. Microbiol. – volume: 6 start-page: 3320 year: 1986 end-page: 3328 ident: bib5 article-title: Expression of the publication-title: Mol. Cell. Biol. – volume: 569 start-page: 29 year: 2005 end-page: 63 ident: bib61 article-title: ER stress and the unfolded protein response publication-title: Mutat. Res. – volume: 61 start-page: 157 year: 1992 end-page: 197 ident: bib94 article-title: Biochemistry of peroxisomes publication-title: Annu. Rev. Biochem. – volume: 36 start-page: 1331 year: 2004 end-page: 1339 ident: bib116 article-title: Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays publication-title: Nat. Genet. – volume: 278 start-page: 20673 year: 2003 end-page: 20680 ident: bib33 article-title: Phosphorylation of the yeast phospholipid synthesis regulatory protein Opi1p by protein kinase A publication-title: J. Biol. Chem. – volume: 278 start-page: 38646 year: 2003 end-page: 38652 ident: bib85 article-title: Expression of the yeast publication-title: J. Biol. Chem. – volume: 36 start-page: 651 year: 2000 end-page: 661 ident: bib4 article-title: Expression of yeast publication-title: Mol. Microbiol. – volume: 12 start-page: 653 year: 1996 end-page: 665 ident: bib7 article-title: Functional characterization of the repeated UAS publication-title: Yeast – volume: 264 start-page: 16537 year: 1989 end-page: 16544 ident: bib102 article-title: Isolation and characterization of publication-title: J. Biol. Chem. – volume: 64 start-page: 1135 year: 1991 end-page: 1143 ident: bib49 article-title: A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator publication-title: Cell – volume: 277 start-page: 37612 year: 2002 end-page: 37618 ident: bib99 article-title: Mutations in the Pho2 (Bas2) transcription factor that differentially affect activation with its partner proteins Bas1, Pho4, and Swi5 publication-title: J. Biol. Chem. – volume: 136 start-page: 475 year: 1994 end-page: 483 ident: bib37 article-title: A pleiotropic phospholipid biosynthetic regulatory mutation in publication-title: Genetics – volume: 396 start-page: 482 year: 1998 end-page: 486 ident: bib142 article-title: The receptor Msn5 exports the phosphorylated transcription factor out of the nucleus publication-title: Nature – volume: 28 start-page: 1499 year: 2000 end-page: 1505 ident: bib14 publication-title: Nucleic Acids Res. – volume: 173 start-page: 2005 year: 1990 end-page: 2012 ident: bib124 article-title: Repression of choline kinase by inositol and choline in publication-title: J. Bacteriol. – volume: 304 start-page: 1644 year: 2004 end-page: 1647 ident: bib25 article-title: Phospholipid metabolism regulated by a transcription factor sensing phosphatidic acid publication-title: Science – volume: 19 start-page: 825 year: 2002 end-page: 840 ident: bib88 article-title: A microarray-assisted screen for potential Hap1 and Rox1 target genes in publication-title: Yeast – volume: 15 start-page: 2955 year: 1995 end-page: 2961 ident: bib113 article-title: Positive control of yeast meiotic genes by the negative regulator publication-title: Mol. Cell. Biol. – volume: 279 start-page: 35353 year: 2004 end-page: 35359 ident: bib125 article-title: Regulation of EKI1-encoded ethanolamine kinase by inositol and choline publication-title: J. Biol. Chem. – volume: 69 start-page: 399 year: 2000 end-page: 418 ident: bib91 article-title: Import of peroxisomal matrix and membrane proteins publication-title: Annu. Rev. Biochem. – volume: 87 start-page: 391 year: 1996 end-page: 404 ident: bib66 article-title: A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response publication-title: Cell – volume: 279 start-page: 21976 year: 2004 end-page: 21983 ident: bib96 article-title: Regulation of phospholipid synthesis in publication-title: J. Biol. Chem. – volume: 179 start-page: 5843 year: 1997 end-page: 5848 ident: bib69 article-title: Regulation of yeast phospholipid biosynthetic genes in phosphatidylserine decarboxylase mutants publication-title: J. Bacteriol. – volume: 169 start-page: 1957 year: 2005 end-page: 1972 ident: bib19 article-title: The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the publication-title: Genetics – volume: 97 start-page: 369 year: 2004 end-page: 373 ident: bib139 article-title: The promoter of the yeast publication-title: J. Biosci. Bioeng. – volume: 270 start-page: 6071 year: 1995 end-page: 6080 ident: bib108 article-title: Phosphatidylserine decarboxylase 2 from publication-title: J. Biol. Chem. – volume: 299 start-page: 112 year: 2003 end-page: 114 ident: bib54 article-title: Modulation of ATP-dependent chromatin-remodelling complexes by inositol polyphosphates publication-title: Science – volume: 271 start-page: 26596 year: 1996 end-page: 26601 ident: bib83 article-title: Carbon source regulation of publication-title: J. Biol. Chem. – volume: 370 start-page: 149 year: 1995 end-page: 152 ident: bib8 article-title: DNA binding site of the yeast heteromeric Ino2p/Ino4p basic helix–loop–helix transcription factor: structural requirements as defined by saturation mutagenesis publication-title: FEBS Lett. – volume: 103 start-page: 423 year: 2000 end-page: 433 ident: bib45 article-title: The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p publication-title: Cell – volume: 32 start-page: 741 year: 1999 end-page: 751 ident: bib55 article-title: The product of the publication-title: Mol. Micro. – volume: 280 start-page: 29017 year: 2005 end-page: 29024 ident: bib86 article-title: Regulation of the publication-title: J. Biol. Chem. – volume: 268 start-page: 24580 year: 1993 end-page: 24590 ident: bib106 article-title: Cloning of a gene ( publication-title: J. Biol. Chem. – volume: 173 start-page: 7992 year: 1991 end-page: 7995 ident: bib104 article-title: Functional analysis of the regulatory region of the yeast phosphatidylserine synthase gene, PSS publication-title: J. Bacteriol. – volume: 92 start-page: 9722 year: 1995 end-page: 9726 ident: bib127 article-title: Regulation of yeast phospholipid biosynthetic gene expression in response to inositol involves two superimposed mechanisms publication-title: Proc. Natl. Acad. Sci. U. S. A. – volume: 4 start-page: 1832 year: 1995 end-page: 1843 ident: bib114 publication-title: Protein Sci. – volume: 27 start-page: 3518 year: 1999 end-page: 3526 ident: bib95 article-title: Characterization of the DNA binding and bending HMG domain of the yeast hypoxic repressor Rox1 publication-title: Nucleic Acids Res. – volume: 284 start-page: 977 year: 1999 end-page: 980 ident: bib143 article-title: Roles of phosphorylation sites in regulating activity of the transcription factor Pho4 publication-title: Science – volume: 170 start-page: 4727 year: 1988 end-page: 4731 ident: bib77 article-title: Expression of the publication-title: J. Bacteriol. – volume: 41 start-page: 155 year: 2001 end-page: 166 ident: bib30 article-title: The negative regulator Opi1 of phospholipid biosynthesis in yeast contacts the pleiotropic repressor Sin3 and the transcriptional activator Ino2 publication-title: Mol. Microbiol. – volume: 47 start-page: 373 year: 2003 end-page: 381 ident: bib75 article-title: Lithium and valproate decrease the membrane phosphatidylinositol/phosphatidylcholine ratio publication-title: Mol. Microbiol. – volume: 17 start-page: 701 year: 2001 end-page: 752 ident: bib90 article-title: Peroxisome biogenesis publication-title: Annu. Rev. Cell Dev. Biol. – volume: 15 start-page: 291 year: 1999 end-page: 339 ident: bib140 article-title: Regulation of nuclear localization: a key to a door publication-title: Annu. Rev. Cell Dev. Biol. – volume: 109 start-page: 276 year: 1991 end-page: 287 ident: bib112 article-title: Identification of the upstream activation sequences responsible for the expression and regulation of the publication-title: J. Biochem. – volume: 20 start-page: 3253 year: 1992 ident: bib12 article-title: The publication-title: Nucleic Acids Res. – volume: 23 start-page: 1964 year: 1995 end-page: 1969 ident: bib44 publication-title: Nucleic Acids Res. – volume: 270 start-page: 25087 year: 1995 end-page: 25095 ident: bib6 article-title: Functional characterization of an inositol-sensitive upstream activation sequence in yeast publication-title: J. Biol. Chem. – volume: 162 start-page: 29 year: 2002 end-page: 43 ident: bib64 article-title: Role of the unfolded protein response pathway in regulation of publication-title: Genetics – volume: 98 start-page: 491 year: 1981 end-page: 503 ident: bib1 article-title: Inositol mutants of publication-title: Genetics – volume: 39 start-page: 77 year: 2001 end-page: 82 ident: bib133 article-title: Over-expression of the publication-title: Curr. Genet. – volume: 90 start-page: 1031 year: 1997 end-page: 1039 ident: bib67 article-title: The transmembrane kinase Ire1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response publication-title: Cell – volume: 18 start-page: 5121 year: 1998 end-page: 5127 ident: bib41 article-title: Targeted recruitment of the Sin3–Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo publication-title: Mol. Cell. Biol. – volume: 262 start-page: 15428 year: 1987 end-page: 15435 ident: bib109 article-title: Yeast phosphatidylethanolamine methylation pathway publication-title: J. Biol. Chem. – volume: 262 start-page: 4876 year: 1987 end-page: 4881 ident: bib76 article-title: Primary structure and disruption of the phosphatidylinositol synthase gene of publication-title: J. Biol. Chem. – volume: 265 start-page: 20778 year: 1990 end-page: 20783 ident: bib122 article-title: Purification and characterization of the yeast rDNA binding protein publication-title: J. Biol. Chem. – volume: 49 start-page: 1595 year: 2003 end-page: 1603 ident: bib71 article-title: Valproate disrupts regulation of inositol responsive genes and alters regulation of phospholipid biosynthesis publication-title: Mol. Microbiol. – volume: 125 start-page: 445 year: 1982 end-page: 451 ident: bib78 article-title: Yeast mutant defective in synthesis of phosphatidylinositol publication-title: Eur. J. Biochem. – volume: 93 start-page: 14503 year: 1996 end-page: 14508 ident: bib42 article-title: HDA1 and RPD3 are members of distinct histone deacetylase complexes that regulate silencing and transcription publication-title: Proc. Natl. Acad. Sci. U. S. A. – volume: 33 start-page: 1150 year: 2005 end-page: 1153 ident: bib115 article-title: Regulation of phospholipid synthesis in yeast by zinc publication-title: Biochem. Soc. Trans. – volume: 1348 start-page: 173 year: 1997 end-page: 178 ident: bib80 article-title: Phosphatidylinositol synthase from yeast publication-title: Biochim. Biophys. Acta – volume: 20 start-page: 1411 year: 1992 end-page: 1418 ident: bib105 publication-title: Nucleic Acids Res. – volume: 15 start-page: 2497 year: 2003 end-page: 2501 ident: bib138 article-title: Update on the basic helix–loop–helix transcription factor gene family in publication-title: Plant Cell – volume: 56 start-page: 696 year: 2005 end-page: 707 ident: bib31 article-title: Constitutive expression of yeast phospholipid biosynthetic genes by variants of Ino2 activator defective for interaction with Opi1 repressor publication-title: Mol. Microbiol. – volume: 280 start-page: 9106 year: 2005 end-page: 9118 ident: bib63 article-title: Genome-wide analysis reveals inositol, not choline, as the major effector of Ino2p–Ino4p and unfolded protein response target gene expression in yeast publication-title: J. Biol. Chem. – volume: 298 start-page: 799 year: 2002 end-page: 804 ident: bib120 article-title: Transcriptional regulatory networks in publication-title: Science – volume: 182 start-page: 2746 year: 2000 end-page: 2752 ident: bib136 article-title: The promoter of the yeast publication-title: J. Bacteriol. – volume: 144 start-page: 2739 year: 1998 end-page: 2748 ident: bib70 article-title: Pleiotropic effects of the publication-title: Microbiology – volume: 101 start-page: 249 year: 2000 end-page: 258 ident: bib60 article-title: Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation publication-title: Cell – volume: 49 start-page: 30 year: 2006 end-page: 38 ident: bib29 article-title: Analysis of Opi1p repressor mutants publication-title: Curr. Genet. – volume: 14 start-page: 348 year: 1994 end-page: 359 ident: bib97 article-title: A library of yeast genomic MCM1 binding sites contains genes involved in cell cycle control, cell wall and membrane structure, and metabolism publication-title: Mol. Cell. Biol. – volume: 19 start-page: 3987 year: 1991 end-page: 3994 ident: bib10 article-title: Interaction of publication-title: Nucleic Acids Res. – volume: 276 start-page: 15466 year: 2001 end-page: 15471 ident: bib74 article-title: Lithium and valproate decrease inositol mass and increase expression of the yeast publication-title: J. Biol. Chem. – volume: 24 start-page: 1322 year: 1996 end-page: 1329 ident: bib39 article-title: The yeast publication-title: Nucleic Acids Res. – volume: 281 start-page: 13110 year: 2006 end-page: 13116 ident: bib126 article-title: Regulation of the publication-title: J. Biol. Chem. – volume: 133 start-page: 515 year: 2003 end-page: 522 ident: bib24 article-title: Role of the yeast VAP homolog, Scs2p, in publication-title: J. Biochem. – volume: 23 start-page: 1426 year: 1995 end-page: 1433 ident: bib53 publication-title: Nucleic Acids Res. – volume: 281 start-page: 9210 year: 2006 end-page: 9218 ident: bib59 article-title: The publication-title: J. Biol. Chem. – volume: 269 start-page: 28769 year: 1994 end-page: 28776 ident: bib144 article-title: Studies employing publication-title: J. Biol. Chem. – volume: 48 start-page: 1119 year: 2003 end-page: 1130 ident: bib16 article-title: TFIIB and subunits of the SAGA complex are involved in transcriptional activation of phospholipid biosynthetic genes by the regulatory protein Ino2 in the yeast publication-title: Mol. Microbiol. – volume: 392 start-page: 831 year: 1998 end-page: 835 ident: bib43 article-title: Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3 publication-title: Nature – volume: 27 start-page: 4391 year: 1999 end-page: 4398 ident: bib131 article-title: Expression of publication-title: Nucleic Acids Res. – volume: 181 start-page: 7409 year: 1999 end-page: 7413 ident: bib89 article-title: Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of publication-title: J. Bacteriol. – volume: 272 start-page: 11215 year: 1997 end-page: 11220 ident: bib135 article-title: Regulation of phospholipid biosynthetic enzymes by the level of CDP-diacylglycerol synthase activity publication-title: J. Biol. Chem. – volume: 89 start-page: 365 year: 1997 end-page: 371 ident: bib40 article-title: Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters publication-title: Cell – volume: 28 start-page: 4460 year: 2000 end-page: 4466 ident: bib13 article-title: A network of yeast basic helix–loop–helix interactions publication-title: Nucleic Acids Res. – volume: 269 start-page: 7402 year: 1994 end-page: 7411 ident: bib11 article-title: Functional characterization of the publication-title: J. Biol. Chem. – volume: 23 start-page: 230 year: 1995 end-page: 237 ident: bib15 article-title: Yeast transcriptional activator publication-title: Nucleic Acids Res. – volume: 268 start-page: 21416 year: 1993 end-page: 21424 ident: bib107 article-title: Phosphatidylserine decarboxylase from publication-title: J. Biol. Chem. – volume: 48 start-page: 823 year: 2003 end-page: 832 ident: bib132 article-title: Opi1p, Ume6p, and Sin3p control expression from the promoter of the publication-title: Mol. Microbiol. – volume: 15 start-page: 1709 year: 1995 end-page: 1715 ident: bib128 article-title: Autoregulated expression of the yeast publication-title: Mol. Cell. Biol. – volume: 102 start-page: 577 year: 2000 end-page: 586 ident: bib101 article-title: Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing publication-title: Cell – volume: 117 start-page: 427 year: 2004 end-page: 439 ident: bib118 article-title: Genome-wide localization of the nuclear machinery couples transcriptional status and nuclear organization publication-title: Cell – volume: 7 start-page: 167 year: 1987 end-page: 176 ident: bib103 article-title: The membrane-associated enzyme phosphatidylserine synthase is regulated at the level of mRNA abundance publication-title: Mol. Cell. Biol. – volume: 97 start-page: 13708 year: 2000 end-page: 13713 ident: bib38 article-title: Genomewide studies of histone deacetylase function in yeast publication-title: Proc. Natl. Acad. Sci. U. S. A. – volume: 97 start-page: 299 year: 1999 end-page: 311 ident: bib51 article-title: Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter publication-title: Cell – volume: 143 start-page: 251 year: 1984 end-page: 256 ident: bib79 article-title: Molecular cloning of the gene encoding CDPdiacylglycerol-inositol 3-phosphatidyltransferase in publication-title: Eur. J. Biochem. – volume: 438 start-page: 113 year: 2005 end-page: 116 ident: bib73 article-title: A putative role for activator turnover in gene expression publication-title: Nature – volume: 20 start-page: 429 year: 2000 end-page: 440 ident: bib137 article-title: Helix–loop–helix proteins: regulators of transcription in eucaryotic organisms publication-title: Mol. Cell. Biol. – volume: 415 start-page: 141 year: 2002 end-page: 147 ident: bib27 article-title: Functional organization of the yeast proteome by systematic analysis of protein complexes publication-title: Nature – volume: 22 start-page: 2025 year: 2003 end-page: 2035 ident: bib26 article-title: A conserved ER targeting motif in three families of lipid binding proteins and in Opi1p binds VAP publication-title: EMBO J. – volume: 23 start-page: 1426 year: 1998 end-page: 1433 ident: bib129 article-title: Transcription of publication-title: Nucleic Acids Res. – volume: 431 start-page: 99 year: 2004 end-page: 104 ident: bib119 article-title: Transcriptional regulatory code of a eukaryotic genome publication-title: Nature – volume: 21 start-page: 5710 year: 2001 end-page: 5722 ident: bib18 article-title: Inhibition of acetyl coenzyme A carboxylase activity restores expression of the publication-title: Mol. Cell. Biol. – volume: 13 start-page: 649 year: 1993 end-page: 658 ident: bib121 article-title: The REB1 site is an essential component of a terminator for RNA polymerase I in publication-title: Mol. Cell. Biol. – volume: 13 start-page: 349 year: 2001 end-page: 355 ident: bib62 article-title: Intracellular signaling from the endoplasmic reticulum to the nucleus: the unfolded protein response in yeast and mammals publication-title: Curr. Opin. Cell Biol. – volume: 35 start-page: 341 year: 2001 end-page: 364 ident: bib141 article-title: New perspectives on nuclear transport publication-title: Annu. Rev. Genet. – volume: 24 start-page: 997 year: 2005 end-page: 1008 ident: bib21 article-title: Histone H3 phosphorylation can promoter TBP recruitment through distinct promoter-specific mechanisms publication-title: EMBO J. – volume: 22 start-page: 4607 year: 2002 end-page: 4621 ident: bib98 article-title: Interactions of the Mcm1 MADS box protein with cofactors that regulate mating in yeast publication-title: Mol. Cell. Biol. – volume: 100 start-page: 19 year: 1982 end-page: 33 ident: bib22 article-title: Regulatory mutations of inositol biosynthesis in yeast: isolation of inositol-excreting mutants publication-title: Genetics – volume: 1677 start-page: 100 year: 2004 end-page: 112 ident: bib56 article-title: ISW1 complexes in publication-title: Biochim. Biophys. Acta – volume: 154 start-page: 304 year: 1983 end-page: 311 ident: bib81 article-title: Phosphatidylinositol biosynthesis in publication-title: J. Bacteriol. – volume: 120 start-page: 909 year: 1988 end-page: 922 ident: bib111 publication-title: Genetics – volume: 261 start-page: 3178 year: 1986 end-page: 3183 ident: bib82 article-title: Phosphatidylinositol synthase from publication-title: J. Biol. Chem. – volume: 10 start-page: 187 year: 2000 end-page: 192 ident: bib52 article-title: Promoter targeting and chromatin remodeling by SWI/SNF publication-title: Curr. Opin. Genet. Dev. – volume: 8 start-page: 1805 year: 1997 end-page: 1814 ident: bib65 article-title: The unfolded protein response coordinates the production of endoplasmic reticulum protein and endoplasmic reticulum membrane publication-title: Mol. Biol. Cell – volume: 222 start-page: 193 year: 1956 end-page: 214 ident: bib123 article-title: The function of sytidine coenzymes in the biosynthesis of phospholipids publication-title: J. Biol. Chem. – volume: 395 start-page: 173 year: 2006 end-page: 181 ident: bib100 article-title: Enhanced levels of Pis1p (phosphatidylinositol synthase) improve the growth of publication-title: Biochem. J. – volume: 2 start-page: e342 year: 2004 ident: bib17 article-title: Gene recruitment of the activated INO1 locus to the nuclear membrane publication-title: PLoS Biol. – volume: 183 start-page: 4985 year: 2001 end-page: 4993 ident: bib48 article-title: The publication-title: J. Bacteriol. – volume: 276 start-page: 29915 year: 2001 end-page: 29923 ident: bib34 article-title: Phosphorylation of the yeast phospholipid synthesis regulatory protein Opi1p by protein kinase C publication-title: J. Biol. Chem. – volume: 21 start-page: 6450 year: 2001 end-page: 6460 ident: bib46 article-title: Widespread collaboration of Isw2 and Sin3–Rpd3 chromatin remodeling complexes in transcriptional repression publication-title: Mol. Cell. Biol. – volume: 17 start-page: 6212 year: 1997 end-page: 6222 ident: bib50 article-title: Role for publication-title: Mol. Cell. Biol. – volume: 279 start-page: 34865 year: 2004 end-page: 34872 ident: bib117 article-title: Genome-wide analysis of ARS (autonomously replicating sequence) binding factor I (Abf1p)-mediated transcriptional regulation in Saccharomyces publication-title: J. Biol. Chem. – volume: 15 start-page: 843 year: 1999 end-page: 854 ident: bib35 article-title: Overproduction of the Opi1 repressor inhibits transcriptional activation of structural genes required for phospholipid biosynthesis in the yeast publication-title: Yeast – volume: 23 start-page: 2281 year: 2004 end-page: 2292 ident: bib68 article-title: The unfolded protein response represses differentiation through the publication-title: EMBO J. – volume: 126 start-page: 232 year: 1976 end-page: 242 ident: bib3 article-title: Control of inositol biosynthesis in publication-title: J. Bacteriol. – volume: 36 start-page: 1331 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib116 article-title: Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays publication-title: Nat. Genet. doi: 10.1038/ng1473 – volume: 281 start-page: 9210 year: 2006 ident: 10.1016/j.bbalip.2006.05.017_bib59 article-title: The Saccharomyces cerevisiae lipin homolog is a Mg2+-dependent phosphatidate phosphatase enzyme publication-title: J. Biol. Chem. doi: 10.1074/jbc.M600425200 – volume: 269 start-page: 7402 year: 1994 ident: 10.1016/j.bbalip.2006.05.017_bib11 article-title: Functional characterization of the INO2 gene of Saccharomyces cerevisiae publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(17)37299-X – volume: 100 start-page: 19 year: 1982 ident: 10.1016/j.bbalip.2006.05.017_bib22 article-title: Regulatory mutations of inositol biosynthesis in yeast: isolation of inositol-excreting mutants publication-title: Genetics doi: 10.1093/genetics/100.1.19 – volume: 22 start-page: 2025 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib26 article-title: A conserved ER targeting motif in three families of lipid binding proteins and in Opi1p binds VAP publication-title: EMBO J. doi: 10.1093/emboj/cdg201 – volume: 92 start-page: 9722 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib127 article-title: Regulation of yeast phospholipid biosynthetic gene expression in response to inositol involves two superimposed mechanisms publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.92.21.9722 – volume: 18 start-page: 5121 year: 1998 ident: 10.1016/j.bbalip.2006.05.017_bib41 article-title: Targeted recruitment of the Sin3–Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.18.9.5121 – volume: 32 start-page: 741 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib55 article-title: The product of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high-molecular-weight protein complex publication-title: Mol. Micro. doi: 10.1046/j.1365-2958.1999.01390.x – volume: 277 start-page: 37612 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib99 article-title: Mutations in the Pho2 (Bas2) transcription factor that differentially affect activation with its partner proteins Bas1, Pho4, and Swi5 publication-title: J. Biol. Chem. doi: 10.1074/jbc.M206125200 – volume: 52 start-page: 1271 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib28 article-title: Identification of novel dominant INO2c mutants with an Opi-phenotype publication-title: Mol. Microbiol. doi: 10.1111/j.1365-2958.2004.04069.x – volume: 137 start-page: 55 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib72 article-title: Isolation and characterization of a mutant Saccharomyces cerevisiae with pleiotropic deficiencies in transcriptional activation and repression publication-title: Genetics doi: 10.1093/genetics/137.1.55 – volume: 184 start-page: 250 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib87 article-title: Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response publication-title: J. Bacteriol. doi: 10.1128/JB.184.1.250-265.2002 – volume: 268 start-page: 24580 year: 1993 ident: 10.1016/j.bbalip.2006.05.017_bib106 article-title: Cloning of a gene (PSD1) encoding phosphatidylserine decarboxylase from Saccharomyces cerevisiae by complementation of an Escherichia coli mutant publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(19)74506-2 – volume: 261 start-page: 3178 year: 1986 ident: 10.1016/j.bbalip.2006.05.017_bib82 article-title: Phosphatidylinositol synthase from Saccharomyces cerevisiae publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(17)35765-4 – volume: 81 start-page: 3816 year: 1984 ident: 10.1016/j.bbalip.2006.05.017_bib2 article-title: Isolation of the yeast INO1 gene: located on an autonomously replicating plasmid publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.81.12.3816 – volume: 279 start-page: 34865 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib117 article-title: Genome-wide analysis of ARS (autonomously replicating sequence) binding factor I (Abf1p)-mediated transcriptional regulation in Saccharomyces publication-title: J. Biol. Chem. doi: 10.1074/jbc.M405156200 – volume: 396 start-page: 482 year: 1998 ident: 10.1016/j.bbalip.2006.05.017_bib142 article-title: The receptor Msn5 exports the phosphorylated transcription factor out of the nucleus publication-title: Nature doi: 10.1038/24898 – volume: 133 start-page: 515 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib24 article-title: Role of the yeast VAP homolog, Scs2p, in INO1 expression and phospholipid metabolism publication-title: J. Biochem. doi: 10.1093/jb/mvg068 – volume: 24 start-page: 1717 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib57 article-title: Mot1-mediated control of transcription complex assembly and activity publication-title: EMBO J. doi: 10.1038/sj.emboj.7600646 – volume: 293 start-page: 1142 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib20 article-title: Snf1-a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription publication-title: Science doi: 10.1126/science.1062322 – volume: 97 start-page: 13708 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib38 article-title: Genomewide studies of histone deacetylase function in yeast publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.250477697 – volume: 6 start-page: 3320 year: 1986 ident: 10.1016/j.bbalip.2006.05.017_bib5 article-title: Expression of the Saccharomyces cerevisiae inositol-1-phosphate synthase (INO1) gene is regulated by factors that affect phospholipid synthesis publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.6.10.3320 – volume: 48 start-page: 823 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib132 article-title: Opi1p, Ume6p, and Sin3p control expression from the promoter of the INO2 regulatory gene via a novel regulatory cascade publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2003.03472.x – volume: 117 start-page: 427 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib118 article-title: Genome-wide localization of the nuclear machinery couples transcriptional status and nuclear organization publication-title: Cell doi: 10.1016/S0092-8674(04)00448-9 – volume: 87 start-page: 391 year: 1996 ident: 10.1016/j.bbalip.2006.05.017_bib66 article-title: A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response publication-title: Cell doi: 10.1016/S0092-8674(00)81360-4 – volume: 284 start-page: 977 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib143 article-title: Roles of phosphorylation sites in regulating activity of the transcription factor Pho4 publication-title: Science doi: 10.1126/science.284.5416.977 – volume: 97 start-page: 369 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib139 article-title: The promoter of the yeast OPI1 regulatory gene publication-title: J. Biosci. Bioeng. doi: 10.1016/S1389-1723(04)70220-0 – volume: 276 start-page: 29915 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib34 article-title: Phosphorylation of the yeast phospholipid synthesis regulatory protein Opi1p by protein kinase C publication-title: J. Biol. Chem. doi: 10.1074/jbc.M105147200 – volume: 276 start-page: 15466 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib74 article-title: Lithium and valproate decrease inositol mass and increase expression of the yeast INO1 and INO2 genes for inositol biosynthesis publication-title: J. Biol. Chem. doi: 10.1074/jbc.M004179200 – volume: 20 start-page: 1411 year: 1992 ident: 10.1016/j.bbalip.2006.05.017_bib105 article-title: Cis and trans regulatory elements required for regulation of the CHO1 gene of Saccharomyces cerevisiae publication-title: Nucleic Acids Res. doi: 10.1093/nar/20.6.1411 – volume: 262 start-page: 15428 year: 1987 ident: 10.1016/j.bbalip.2006.05.017_bib109 article-title: Yeast phosphatidylethanolamine methylation pathway publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(18)47744-7 – volume: 264 start-page: 16537 year: 1989 ident: 10.1016/j.bbalip.2006.05.017_bib102 article-title: Isolation and characterization of OLE1, a gene affecting fatty acid desaturation from Saccharomyces cerevisiae publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(19)84740-3 – volume: 15 start-page: 2955 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib113 article-title: Positive control of yeast meiotic genes by the negative regulator UME6 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.15.6.2955 – volume: 89 start-page: 365 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib40 article-title: Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters publication-title: Cell doi: 10.1016/S0092-8674(00)80217-2 – volume: 270 start-page: 25087 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib6 article-title: Functional characterization of an inositol-sensitive upstream activation sequence in yeast publication-title: J. Biol. Chem. doi: 10.1074/jbc.270.42.25087 – volume: 24 start-page: 997 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib21 article-title: Histone H3 phosphorylation can promoter TBP recruitment through distinct promoter-specific mechanisms publication-title: EMBO J. doi: 10.1038/sj.emboj.7600577 – volume: 271 start-page: 26596 year: 1996 ident: 10.1016/j.bbalip.2006.05.017_bib83 article-title: Carbon source regulation of PIS1 gene expression in Saccharomyces cerevisiae involves the MCM1 gene and the two component regulatory gene, SLN1 publication-title: J. Biol. Chem. doi: 10.1074/jbc.271.43.26596 – volume: 20 start-page: 429 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib137 article-title: Helix–loop–helix proteins: regulators of transcription in eucaryotic organisms publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.20.2.429-440.2000 – volume: 265 start-page: 20778 year: 1990 ident: 10.1016/j.bbalip.2006.05.017_bib122 article-title: Purification and characterization of the yeast rDNA binding protein publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(17)45283-5 – volume: 28 start-page: 1499 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib14 article-title: Saccharomyces cerevisiae basic helix–loop–helix proteins regulate diverse biological processes publication-title: Nucleic Acids Res. doi: 10.1093/nar/28.7.1499 – volume: 56 start-page: 696 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib31 article-title: Constitutive expression of yeast phospholipid biosynthetic genes by variants of Ino2 activator defective for interaction with Opi1 repressor publication-title: Mol. Microbiol. doi: 10.1111/j.1365-2958.2004.04499.x – volume: 270 start-page: 6071 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib108 article-title: Phosphatidylserine decarboxylase 2 from Saccharomyces cerevisiae publication-title: J. Biol. Chem. doi: 10.1074/jbc.270.11.6071 – volume: 162 start-page: 29 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib64 article-title: Role of the unfolded protein response pathway in regulation of INO1 and in the sec14 bypass mechanism in Saccharomyces cerevisiae publication-title: Genetics doi: 10.1093/genetics/162.1.29 – volume: 10 start-page: 187 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib52 article-title: Promoter targeting and chromatin remodeling by SWI/SNF publication-title: Curr. Opin. Genet. Dev. doi: 10.1016/S0959-437X(00)00068-X – volume: 392 start-page: 831 year: 1998 ident: 10.1016/j.bbalip.2006.05.017_bib43 article-title: Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3 publication-title: Nature doi: 10.1038/33952 – volume: 406 start-page: 541 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib47 article-title: A chromatin remodelling complex involved in transcription and DNA processing publication-title: Nature doi: 10.1038/35020123 – volume: 278 start-page: 38646 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib85 article-title: Expression of the yeast PIS1 gene requires multiple regulatory elements including a Rox1p binding site publication-title: J. Biol. Chem. doi: 10.1074/jbc.M305251200 – volume: 109 start-page: 276 year: 1991 ident: 10.1016/j.bbalip.2006.05.017_bib112 article-title: Identification of the upstream activation sequences responsible for the expression and regulation of the PEM1 and PEM2 genes encoding the enzymes of the phosphatidylethanolamine methylation pathway in Saccharomyces cerevisiae publication-title: J. Biochem. – volume: 1677 start-page: 100 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib56 article-title: ISW1 complexes in Saccharomyces cerevisiae publication-title: Biochim. Biophys. Acta doi: 10.1016/j.bbaexp.2003.10.014 – volume: 182 start-page: 2746 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib136 article-title: The promoter of the yeast INO4 regulatory gene: a model of the simplest yeast promoter publication-title: J. Bacteriol. doi: 10.1128/JB.182.10.2746-2752.2000 – volume: 125 start-page: 445 year: 1982 ident: 10.1016/j.bbalip.2006.05.017_bib78 article-title: Yeast mutant defective in synthesis of phosphatidylinositol publication-title: Eur. J. Biochem. doi: 10.1111/j.1432-1033.1982.tb06703.x – volume: 4 start-page: 604 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib84 article-title: Genomic analysis of PIS1 gene expression publication-title: Euk. Cell doi: 10.1128/EC.4.3.604-614.2005 – volume: 143 start-page: 251 year: 1984 ident: 10.1016/j.bbalip.2006.05.017_bib79 article-title: Molecular cloning of the gene encoding CDPdiacylglycerol-inositol 3-phosphatidyltransferase in Saccharomyces cerevisiae publication-title: Eur. J. Biochem. doi: 10.1111/j.1432-1033.1984.tb08366.x – volume: 69 start-page: 399 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib91 article-title: Import of peroxisomal matrix and membrane proteins publication-title: Annu. Rev. Biochem. doi: 10.1146/annurev.biochem.69.1.399 – volume: 102 start-page: 577 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib101 article-title: Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing publication-title: Cell doi: 10.1016/S0092-8674(00)00080-5 – volume: 28 start-page: 4460 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib13 article-title: A network of yeast basic helix–loop–helix interactions publication-title: Nucleic Acids Res. doi: 10.1093/nar/28.22.4460 – volume: 15 start-page: 843 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib35 article-title: Overproduction of the Opi1 repressor inhibits transcriptional activation of structural genes required for phospholipid biosynthesis in the yeast Saccharomyces cerevisiae publication-title: Yeast doi: 10.1002/(SICI)1097-0061(199907)15:10A<843::AID-YEA424>3.0.CO;2-M – volume: 1348 start-page: 173 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib80 article-title: Phosphatidylinositol synthase from yeast publication-title: Biochim. Biophys. Acta doi: 10.1016/S0005-2760(97)00103-3 – volume: 15 start-page: 1709 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib128 article-title: Autoregulated expression of the yeast INO2 and INO4 helix–loop–helix genes effects cooperative regulation on their target genes publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.15.3.1709 – volume: 48 start-page: 1119 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib16 article-title: TFIIB and subunits of the SAGA complex are involved in transcriptional activation of phospholipid biosynthetic genes by the regulatory protein Ino2 in the yeast Saccharomyces cerevisiae publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2003.03501.x – volume: 395 start-page: 173 year: 2006 ident: 10.1016/j.bbalip.2006.05.017_bib100 article-title: Enhanced levels of Pis1p (phosphatidylinositol synthase) improve the growth of Saccharomyces cerevisiae cells deficient in Rsp5 ubiquitin ligase publication-title: Biochem. J. doi: 10.1042/BJ20051726 – volume: 120 start-page: 909 year: 1988 ident: 10.1016/j.bbalip.2006.05.017_bib111 article-title: Saccharomyces cerevisiae cho2 mutants are deficient in phospholipid methylation and cross-pathway regulation of inositol synthesis publication-title: Genetics doi: 10.1093/genetics/120.4.909 – volume: 431 start-page: 99 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib119 article-title: Transcriptional regulatory code of a eukaryotic genome publication-title: Nature doi: 10.1038/nature02800 – volume: 370 start-page: 149 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib8 article-title: DNA binding site of the yeast heteromeric Ino2p/Ino4p basic helix–loop–helix transcription factor: structural requirements as defined by saturation mutagenesis publication-title: FEBS Lett. doi: 10.1016/0014-5793(95)00818-T – volume: 2 start-page: 205 year: 1992 ident: 10.1016/j.bbalip.2006.05.017_bib23 article-title: Structure of the leucine zipper publication-title: Curr. Opin. Genet. Dev. doi: 10.1016/S0959-437X(05)80275-8 – volume: 22 start-page: 4607 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib98 article-title: Interactions of the Mcm1 MADS box protein with cofactors that regulate mating in yeast publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.22.13.4607-4621.2002 – volume: 268 start-page: 21416 year: 1993 ident: 10.1016/j.bbalip.2006.05.017_bib107 article-title: Phosphatidylserine decarboxylase from Saccharomyces cerevisiae publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(19)36940-6 – volume: 49 start-page: 1595 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib71 article-title: Valproate disrupts regulation of inositol responsive genes and alters regulation of phospholipid biosynthesis publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2003.03641.x – volume: 173 start-page: 2005 year: 1990 ident: 10.1016/j.bbalip.2006.05.017_bib124 article-title: Repression of choline kinase by inositol and choline in Saccharomyces cerevisiae publication-title: J. Bacteriol. doi: 10.1128/jb.172.4.2005-2012.1990 – volume: 272 start-page: 11215 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib135 article-title: Regulation of phospholipid biosynthetic enzymes by the level of CDP-diacylglycerol synthase activity publication-title: J. Biol. Chem. doi: 10.1074/jbc.272.17.11215 – volume: 179 start-page: 5843 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib69 article-title: Regulation of yeast phospholipid biosynthetic genes in phosphatidylserine decarboxylase mutants publication-title: J. Bacteriol. doi: 10.1128/jb.179.18.5843-5848.1997 – volume: 7 start-page: 167 year: 1987 ident: 10.1016/j.bbalip.2006.05.017_bib103 article-title: The membrane-associated enzyme phosphatidylserine synthase is regulated at the level of mRNA abundance publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.7.1.167 – volume: 12 start-page: 653 year: 1996 ident: 10.1016/j.bbalip.2006.05.017_bib7 article-title: Functional characterization of the repeated UASINO element in the promoters of the INO1 and CHO2 genes of yeast publication-title: Yeast doi: 10.1002/(SICI)1097-0061(19960615)12:7<653::AID-YEA953>3.0.CO;2-T – volume: 15 start-page: 2497 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib138 article-title: Update on the basic helix–loop–helix transcription factor gene family in Arabidopsis thaliana publication-title: Plant Cell doi: 10.1105/tpc.151140 – volume: 21 start-page: 6450 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib46 article-title: Widespread collaboration of Isw2 and Sin3–Rpd3 chromatin remodeling complexes in transcriptional repression publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.21.19.6450-6460.2001 – volume: 27 start-page: 4391 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib131 article-title: Expression of GUT1, which encodes glycerol kinase in Saccharomyces cerevisiae, is controlled by the positive regulators Adr1p, Ino2p, and Ino4p, and the negative regulator Opi1p in a carbon source-dependent fashion publication-title: Nucleic Acids Res. doi: 10.1093/nar/27.22.4391 – volume: 299 start-page: 112 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib54 article-title: Modulation of ATP-dependent chromatin-remodelling complexes by inositol polyphosphates publication-title: Science doi: 10.1126/science.1078068 – volume: 21 start-page: 5710 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib18 article-title: Inhibition of acetyl coenzyme A carboxylase activity restores expression of the INO1 gene in a snf1 mutant strain of Saccharomyces cerevisiae publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.21.17.5710-5722.2001 – volume: 93 start-page: 14503 year: 1996 ident: 10.1016/j.bbalip.2006.05.017_bib42 article-title: HDA1 and RPD3 are members of distinct histone deacetylase complexes that regulate silencing and transcription publication-title: Proc. Natl. Acad. Sci. U. S. A. doi: 10.1073/pnas.93.25.14503 – volume: 170 start-page: 4727 year: 1988 ident: 10.1016/j.bbalip.2006.05.017_bib77 article-title: Expression of the Saccharomyces cerevisiae PIS gene and synthesis of phosphatidylinositol in Escherichia coli publication-title: J. Bacteriol. doi: 10.1128/jb.170.10.4727-4731.1988 – volume: 17 start-page: 701 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib90 article-title: Peroxisome biogenesis publication-title: Annu. Rev. Cell Dev. Biol. doi: 10.1146/annurev.cellbio.17.1.701 – volume: 49 start-page: 30 year: 2006 ident: 10.1016/j.bbalip.2006.05.017_bib29 article-title: Analysis of Opi1p repressor mutants publication-title: Curr. Genet. doi: 10.1007/s00294-005-0021-6 – volume: 24 start-page: 1931 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib58 article-title: The yeast lipin Smp2 couples phospholipid biosynthesis to nuclear membrane growth publication-title: EMBO J. doi: 10.1038/sj.emboj.7600672 – volume: 28 start-page: 3160 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib36 article-title: Combinatorial regulation of phospholipid biosynthetic gene expression by the UME6, SIN3, and RPD3 genes publication-title: Nucleic Acids Res. doi: 10.1093/nar/28.16.3160 – volume: 279 start-page: 21976 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib96 article-title: Regulation of phospholipid synthesis in Saccharomyces cerevisiae by zinc publication-title: J. Biol. Chem. doi: 10.1074/jbc.M402047200 – volume: 47 start-page: 373 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib75 article-title: Lithium and valproate decrease the membrane phosphatidylinositol/phosphatidylcholine ratio publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2003.03284.x – volume: 31 start-page: 462 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib134 article-title: Influence of gene dosage and autoregulation of the regulatory genes INO2 and INO4 on inositol/choline-repressible gene transcription in the yeast Saccharomyces cerevisiae publication-title: Curr. Genet. doi: 10.1007/s002940050231 – volume: 103 start-page: 423 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib45 article-title: The Isw2 chromatin remodeling complex represses early meiotic genes upon recruitment by Ume6p publication-title: Cell doi: 10.1016/S0092-8674(00)00134-3 – volume: 569 start-page: 29 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib61 article-title: ER stress and the unfolded protein response publication-title: Mutat. Res. doi: 10.1016/j.mrfmmm.2004.06.056 – volume: 39 start-page: 77 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib133 article-title: Over-expression of the INO2 regulatory gene alters regulation of an INO1-lacZ reporter gene but does not affect regulation of INO1 expression publication-title: Curr. Genet. doi: 10.1007/s002940100186 – volume: 24 start-page: 1322 year: 1996 ident: 10.1016/j.bbalip.2006.05.017_bib39 article-title: The yeast UME6 gene is required for both negative and positive transcriptional regulation of phospholipid biosynthetic gene expression publication-title: Nucleic Acids Res. doi: 10.1093/nar/24.7.1322 – volume: 13 start-page: 349 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib62 article-title: Intracellular signaling from the endoplasmic reticulum to the nucleus: the unfolded protein response in yeast and mammals publication-title: Curr. Opin. Cell Biol. doi: 10.1016/S0955-0674(00)00219-2 – volume: 280 start-page: 9106 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib63 article-title: Genome-wide analysis reveals inositol, not choline, as the major effector of Ino2p–Ino4p and unfolded protein response target gene expression in yeast publication-title: J. Biol. Chem. doi: 10.1074/jbc.M411770200 – volume: 14 start-page: 348 year: 1994 ident: 10.1016/j.bbalip.2006.05.017_bib97 article-title: A library of yeast genomic MCM1 binding sites contains genes involved in cell cycle control, cell wall and membrane structure, and metabolism publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.14.1.348 – volume: 279 start-page: 35353 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib125 article-title: Regulation of EKI1-encoded ethanolamine kinase by inositol and choline publication-title: J. Biol. Chem. doi: 10.1074/jbc.M405704200 – volume: 262 start-page: 4876 year: 1987 ident: 10.1016/j.bbalip.2006.05.017_bib76 article-title: Primary structure and disruption of the phosphatidylinositol synthase gene of Saccharomyces cerevisiae publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(18)61277-3 – volume: 269 start-page: 28769 year: 1994 ident: 10.1016/j.bbalip.2006.05.017_bib144 article-title: Studies employing Saccharomyces cerevisiae cpt1 and ept1 null mutants implicate the CPT1 gene in coordinate regulation of phospholipid biosynthesis publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(19)61972-1 – volume: 281 start-page: 13110 year: 2006 ident: 10.1016/j.bbalip.2006.05.017_bib126 article-title: Regulation of the Saccharomyces cerevisiae EKI1-encoded ethanolamine kinase by zinc depletion publication-title: J. Biol. Chem. doi: 10.1074/jbc.M601612200 – volume: 126 start-page: 232 year: 1976 ident: 10.1016/j.bbalip.2006.05.017_bib3 article-title: Control of inositol biosynthesis in Saccharomyces cerevisiae: properties of a repressible enzyme system in extracts of wild type (Ino+) cells publication-title: J. Bacteriol. doi: 10.1128/JB.126.1.232-242.1976 – volume: 19 start-page: 3987 year: 1991 ident: 10.1016/j.bbalip.2006.05.017_bib10 article-title: Interaction of trans and cis regulatory elements in the INO1 promoter of Saccharomyces cerevisiae publication-title: Nucleic Acids Res. doi: 10.1093/nar/19.14.3987 – volume: 41 start-page: 155 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib30 article-title: The negative regulator Opi1 of phospholipid biosynthesis in yeast contacts the pleiotropic repressor Sin3 and the transcriptional activator Ino2 publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2001.02495.x – volume: 23 start-page: 1964 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib44 article-title: SIN3 works through two different promoter elements to regulate INO1 expression in yeast publication-title: Nucleic Acids Res. doi: 10.1093/nar/23.11.1964 – volume: 4 start-page: 1832 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib114 article-title: UME6, a negative regulator of meiosis in Saccharomyces cerevisiae, contains a C-terminal Zn2Cys6 binuclear cluster that binds the URS1 DNA sequence in a zinc-dependent manner publication-title: Protein Sci. doi: 10.1002/pro.5560040918 – volume: 438 start-page: 113 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib73 article-title: A putative role for activator turnover in gene expression publication-title: Nature doi: 10.1038/nature04098 – volume: 169 start-page: 1957 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib19 article-title: The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter publication-title: Genetics doi: 10.1534/genetics.104.038075 – volume: 281 start-page: 4754 year: 2006 ident: 10.1016/j.bbalip.2006.05.017_bib32 article-title: Casein kinase II phosphorylation of the yeast phospholipid synthesis transcription factor publication-title: J. Biol. Chem. doi: 10.1074/jbc.M513064200 – volume: 269 start-page: 15344 year: 1994 ident: 10.1016/j.bbalip.2006.05.017_bib9 article-title: INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(17)36612-7 – volume: 1 start-page: 465 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib92 article-title: How peroxisomes arise publication-title: Traffic doi: 10.1034/j.1600-0854.2000.010604.x – volume: 33 start-page: 1150 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib115 article-title: Regulation of phospholipid synthesis in yeast by zinc publication-title: Biochem. Soc. Trans. doi: 10.1042/BST0331150 – volume: 19 start-page: 825 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib88 article-title: A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae publication-title: Yeast doi: 10.1002/yea.879 – volume: 23 start-page: 1426 year: 1998 ident: 10.1016/j.bbalip.2006.05.017_bib129 article-title: Transcription of INO2 and INO4 is regulated by the state of protein N-myristoylation in Saccharomyces cerevisiae publication-title: Nucleic Acids Res. – volume: 98 start-page: 491 year: 1981 ident: 10.1016/j.bbalip.2006.05.017_bib1 article-title: Inositol mutants of Saccharomyces cerevisiae: mapping the ino1 locus and characterizing alleles of ino1, ino2 and ino4 loci publication-title: Genetics doi: 10.1093/genetics/98.3.491 – volume: 144 start-page: 2739 year: 1998 ident: 10.1016/j.bbalip.2006.05.017_bib70 article-title: Pleiotropic effects of the opi1 regulatory mutation of yeast: its effects on growth and phospholipid and inositol composition publication-title: Microbiology doi: 10.1099/00221287-144-10-2739 – volume: 136 start-page: 475 year: 1994 ident: 10.1016/j.bbalip.2006.05.017_bib37 article-title: A pleiotropic phospholipid biosynthetic regulatory mutation in Saccharomyces cerevisiae is allelic to sin3 (sdi1, ume4, rpd1) publication-title: Genetics doi: 10.1093/genetics/136.2.475 – volume: 298 start-page: 799 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib120 article-title: Transcriptional regulatory networks in Saccharomyces cerevisiae publication-title: Science doi: 10.1126/science.1075090 – volume: 278 start-page: 20673 year: 2003 ident: 10.1016/j.bbalip.2006.05.017_bib33 article-title: Phosphorylation of the yeast phospholipid synthesis regulatory protein Opi1p by protein kinase A publication-title: J. Biol. Chem. doi: 10.1074/jbc.M300132200 – volume: 183 start-page: 4985 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib48 article-title: The Saccharomyces cerevisiae Isw2p–Itc1p complex represses INO1 expression and maintains cell morphology publication-title: J. Bacteriol. doi: 10.1128/JB.183.17.4985-4993.2001 – volume: 23 start-page: 1426 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib53 article-title: INO1-100: an allele of the Saccharomyces cerevisiae INO1 gene that is transcribed without the action of the positive factors encoded by the INO2, INO4, SWI1, SWI2, and SWI3 gene publication-title: Nucleic Acids Res. doi: 10.1093/nar/23.8.1426 – volume: 36 start-page: 651 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib4 article-title: Expression of yeast INM1 encoding inositol monophosphatase is regulated by inositol, carbon source and growth stage and is decreased by lithium and valproate publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2000.01886.x – volume: 97 start-page: 299 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib51 article-title: Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter publication-title: Cell doi: 10.1016/S0092-8674(00)80740-0 – volume: 181 start-page: 7409 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib89 article-title: Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae publication-title: J. Bacteriol. doi: 10.1128/JB.181.24.7409-7413.1999 – volume: 2 start-page: 357 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib93 article-title: The life cycle of the peroxisome publication-title: Nat. Rev., Mol. Cell Biol. doi: 10.1038/35073063 – volume: 13 start-page: 649 year: 1993 ident: 10.1016/j.bbalip.2006.05.017_bib121 article-title: The REB1 site is an essential component of a terminator for RNA polymerase I in Saccharomyces cerevisiae publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.13.1.649 – volume: 173 start-page: 7992 year: 1991 ident: 10.1016/j.bbalip.2006.05.017_bib104 article-title: Functional analysis of the regulatory region of the yeast phosphatidylserine synthase gene, PSS publication-title: J. Bacteriol. doi: 10.1128/jb.173.24.7992-7995.1991 – volume: 20 start-page: 3253 year: 1992 ident: 10.1016/j.bbalip.2006.05.017_bib12 article-title: The INO2 gene of Saccharomyces cerevisiae encodes a helix–loop–helix protein that is required for activation of phospholipid synthesis publication-title: Nucleic Acids Res. doi: 10.1093/nar/20.12.3253 – volume: 15 start-page: 291 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib140 article-title: Regulation of nuclear localization: a key to a door publication-title: Annu. Rev. Cell Dev. Biol. doi: 10.1146/annurev.cellbio.15.1.291 – volume: 101 start-page: 249 year: 2000 ident: 10.1016/j.bbalip.2006.05.017_bib60 article-title: Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation publication-title: Cell doi: 10.1016/S0092-8674(00)80835-1 – volume: 23 start-page: 2281 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib68 article-title: The unfolded protein response represses differentiation through the RPD3-SIN3 histone deacetylase publication-title: EMBO J. doi: 10.1038/sj.emboj.7600233 – volume: 415 start-page: 141 year: 2002 ident: 10.1016/j.bbalip.2006.05.017_bib27 article-title: Functional organization of the yeast proteome by systematic analysis of protein complexes publication-title: Nature doi: 10.1038/415141a – volume: 222 start-page: 193 year: 1956 ident: 10.1016/j.bbalip.2006.05.017_bib123 article-title: The function of sytidine coenzymes in the biosynthesis of phospholipids publication-title: J. Biol. Chem. doi: 10.1016/S0021-9258(19)50785-2 – volume: 90 start-page: 1031 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib67 article-title: The transmembrane kinase Ire1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response publication-title: Cell doi: 10.1016/S0092-8674(00)80369-4 – volume: 122 start-page: 317 year: 1989 ident: 10.1016/j.bbalip.2006.05.017_bib110 article-title: Mutations in the Saccharomyces cerevisiae opi3 gene: effects on phospholipid methylation, growth and cross-pathway regulation of inositol synthesis publication-title: Genetics doi: 10.1093/genetics/122.2.317 – volume: 280 start-page: 29017 year: 2005 ident: 10.1016/j.bbalip.2006.05.017_bib86 article-title: Regulation of the PIS1-encoded phosphatidylinositol synthase in Saccharomyces cerevisiae by zinc publication-title: J. Biol. Chem. doi: 10.1074/jbc.M505881200 – volume: 39 start-page: 1395 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib130 article-title: Expression of the INO2 regulatory gene of Saccharomyces cerevisiae is controlled by positive and negative promoter elements and an upstream open reading frame publication-title: Mol. Microbiol. doi: 10.1111/j.1365-2958.2001.02330.x – volume: 64 start-page: 1135 year: 1991 ident: 10.1016/j.bbalip.2006.05.017_bib49 article-title: A functional interaction between the C-terminal domain of RNA polymerase II and the negative regulator SIN1 publication-title: Cell doi: 10.1016/0092-8674(91)90268-4 – volume: 35 start-page: 341 year: 2001 ident: 10.1016/j.bbalip.2006.05.017_bib141 article-title: New perspectives on nuclear transport publication-title: Annu. Rev. Genet. doi: 10.1146/annurev.genet.35.102401.090720 – volume: 17 start-page: 6212 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib50 article-title: Role for ADA/GCN5 products in antagonizing chromatin-mediated transcriptional repression publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.17.11.6212 – volume: 23 start-page: 230 year: 1995 ident: 10.1016/j.bbalip.2006.05.017_bib15 article-title: Yeast transcriptional activator INO2 interacts as an Ino2p/Ino4p basic helix–loop–helix heteromeric complex with the inositol/choline-responsive element necessary for expression of phospholipid biosynthetic genes in Saccharomyces cerevisiae publication-title: Nucleic Acids Res. doi: 10.1093/nar/23.2.230 – volume: 8 start-page: 1805 year: 1997 ident: 10.1016/j.bbalip.2006.05.017_bib65 article-title: The unfolded protein response coordinates the production of endoplasmic reticulum protein and endoplasmic reticulum membrane publication-title: Mol. Biol. Cell doi: 10.1091/mbc.8.9.1805 – volume: 2 start-page: e342 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib17 article-title: Gene recruitment of the activated INO1 locus to the nuclear membrane publication-title: PLoS Biol. doi: 10.1371/journal.pbio.0020342 – volume: 27 start-page: 3518 year: 1999 ident: 10.1016/j.bbalip.2006.05.017_bib95 article-title: Characterization of the DNA binding and bending HMG domain of the yeast hypoxic repressor Rox1 publication-title: Nucleic Acids Res. doi: 10.1093/nar/27.17.3518 – volume: 154 start-page: 304 year: 1983 ident: 10.1016/j.bbalip.2006.05.017_bib81 article-title: Phosphatidylinositol biosynthesis in Saccharomyces cerevisiae: purification and properties of microsome-associated phosphatidylinositol synthase publication-title: J. Bacteriol. doi: 10.1128/JB.154.1.304-311.1983 – volume: 304 start-page: 1644 year: 2004 ident: 10.1016/j.bbalip.2006.05.017_bib25 article-title: Phospholipid metabolism regulated by a transcription factor sensing phosphatidic acid publication-title: Science doi: 10.1126/science.1096083 – volume: 61 start-page: 157 year: 1992 ident: 10.1016/j.bbalip.2006.05.017_bib94 article-title: Biochemistry of peroxisomes publication-title: Annu. Rev. Biochem. doi: 10.1146/annurev.bi.61.070192.001105 |
| SSID | ssj0015335 ssj0025309 |
| Score | 2.1174119 |
| SecondaryResourceType | review_article |
| Snippet | The last several years have been witness to significant developments in understanding transcriptional regulation of the yeast phospholipid structural genes.... |
| SourceID | proquest pubmed crossref elsevier |
| SourceType | Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | 310 |
| SubjectTerms | Activators Auto-regulation Basic Helix-Loop-Helix CDP-Diacylglycerol-Inositol 3-Phosphatidyltransferase - genetics Chromatin modification Chromatin remodelling Fungal Proteins - physiology Gene Expression Regulation, Enzymologic Gene Expression Regulation, Fungal INO1 Intramolecular Lyases - metabolism Myo-Inositol-1-Phosphate Synthase - metabolism Phospholipids - biosynthesis Phospholipids - genetics Regulation Regulators Repressors Saccharomyces cerevisiae Proteins - metabolism Transcription Transcription Factors - physiology Transcription, Genetic Yeasts - enzymology Yeasts - genetics |
| Title | Transcriptional regulation of yeast phospholipid biosynthetic genes |
| URI | https://dx.doi.org/10.1016/j.bbalip.2006.05.017 https://www.ncbi.nlm.nih.gov/pubmed/16854618 https://www.proquest.com/docview/70316475 |
| Volume | 1771 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnR3LTtwwcMRDVbmgFtqytCw-VL2lGzu24xy3UdGWbVFFi8rNiuO4LIJkxS6HvfDtjJOYqgeExCGKE2Xi0cxoHvZ4BuCjU5nIVFxGpRVxxBlNoqyQccSSgtJKFdZJf8D5x4mcnPHjc3G-Bnk4C-PTKnvd3-n0Vlv3b0Y9NUfz2Wz0iyYKzZnCmKatE6XWYZMlmUTR3hx_m05OHjYT0KMRbdyFQuEBwgm6Ns3LGPR35_2uhC_hmT5moR7zQFtLdPQKtnsXkow7LF_DWlXvwO64xvD5ekU-kTaps10t34EXX8LoZR5au-1C3lqooC_wXzddR3p8II0jK9_Ph8wvmgVeiPbMEjNrFqsanUWck_z1-vENnB19_Z1Por6bQlSiFV5GlnHni4MxyYylvOSuklaIUhhOkWMyddQIVaSmkMxlGcZdzlZOClaauLRcJm9ho27qag8ItZxX3AcjtsCBybzi4MIWGDyxJDEDSAIFddmXGvcdL650yCm71B3dfRdMqWOhke4DiB6g5l2pjSe-TwNz9H8io9EaPAF5GHipkfJ-i6Soq-Z2oX01f8lTMYB3HYv_YSKV4JKq_WfP-h62uoVhn8D2ATaWN7fVAXo0SzOE9c93dIhym59-_zns5dffp6d_pvdbx_ea |
| linkProvider | Elsevier |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnR27TuQwcMRDCJrT8TqWO8AFogsbJ7bjlNwKtDwbQKKz4jiGRUeyYpdiG76dsRNzokBIFJGcyI5HM_Y87HkA7FuZ81zGZVQaHkcsoWmUFyKOkrSgtJKFscIFOF9eieEtO7vjd3MwCLEwzq2y4_0tT_fcuvvS77DZH49G_WuaShRnEm0anydKzsMiw-3rdufh67ufh9NnuLe6cEm47iF-zjt5aY3a7ri7k3AJPLPP5NNn-qeXQyc_4UenQJKjFsZVmKvqNVg_qtF4fpqRA-JdOv1Z-Ros_Q2t5UEo7LYOAy-fArfAfz239ejxhTSWzFw1HzJ-aCb4INgjQ_SomcxqVBVxTnLvuOMG3J4c3wyGUVdLISpRBk8jkzDrUoMlItGGspLZShjOS64ZRXqJzFLNZZHpQiQ2z9HqsqaygieljkvDRLoJC3VTV1tAqGGsYs4UMQU2dO7YBuOmQNMpSVPdgzRgUJVdonFX7-KfCh5lj6rFu6uBKVTMFeK9B9H7qHGbaOOL_lkgjvqwYBTKgi9G7gVaKsS8uyAp6qp5mSiXy1-wjPfgV0vi_5AIyZmgcvvbs-7B8vDm8kJdnF6d_4aV9ojYubL9gYXp80u1g7rNVO_6tfsG-c_1Jg |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Transcriptional+regulation+of+yeast+phospholipid+biosynthetic+genes&rft.jtitle=Biochimica+et+biophysica+acta.+Molecular+and+cell+biology+of+lipids&rft.au=Chen%2C+Meng&rft.au=Hancock%2C+Leandria+C.&rft.au=Lopes%2C+John+M.&rft.date=2007-03-01&rft.issn=1388-1981&rft.volume=1771&rft.issue=3&rft.spage=310&rft.epage=321&rft_id=info:doi/10.1016%2Fj.bbalip.2006.05.017&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_bbalip_2006_05_017 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1388-1981&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1388-1981&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1388-1981&client=summon |