Genomic diversity of group A rotaviruses from wild boars and domestic pigs in Japan: wide prevalence of NSP5 carrying the H2 genotype

• Published in: Archives of virology Vol. 169; no. 3; p. 63
• Main Authors: Shizawa, Shigeki, Fukuda, Fujiko, Kikkawa, Yasuhiro, Oi, Toru, Takemae, Hitoshi, Masuda, Tsuneyuki, Ishida, Hiroho, Murakami, Hironobu, Sakaguchi, Shoichi, Mizutani, Tetsuya, Nagai, Makoto, Oba, Mami
• Format: Journal Article
• Language: English
• Published: Vienna Springer Vienna 01.03.2024; Springer Nature B.V
• Subjects: Animals; Biomedical and Life Sciences; Biomedicine; Brief Report; Cell culture; Cross-sectional studies; Diarrhea; Domestic animals; Farms; Feces; genetic variation; Genomes; Genomics; Genotype; Genotype & phenotype; Genotypes; Hogs; Infectious Diseases; Japan; Japan - epidemiology; Medical Microbiology; Next-generation sequencing; Nucleotide sequence; nucleotide sequences; Prevalence; Proteins; Rotavirus; Rotavirus - genetics; Rotavirus A; Sequence analysis; sequence diversity; Sus scrofa; Swine; Vaccines; Veterinary medicine; Virology; Viruses; wild boars; Japan

Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carr...