Genomic diversity of group A rotaviruses from wild boars and domestic pigs in Japan: wide prevalence of NSP5 carrying the H2 genotype
Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carr...
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| Published in | Archives of virology Vol. 169; no. 3; p. 63 |
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| Main Authors | , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
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01.03.2024
Springer Nature B.V |
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| Abstract | Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carried the rare H2 NSP5 genotype. Out of the 39 samples for which the NSP5 genotype could be determined, 23 (59.0%) were of genotype H2. H2 porcine RVAs consist exclusively of Japanese porcine RVAs and exhibit sequence diversity in each segment, suggesting that H2 porcine RVAs may have evolved through reassortment within the Japanese pig population. |
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| AbstractList | Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carried the rare H2 NSP5 genotype. Out of the 39 samples for which the NSP5 genotype could be determined, 23 (59.0%) were of genotype H2. H2 porcine RVAs consist exclusively of Japanese porcine RVAs and exhibit sequence diversity in each segment, suggesting that H2 porcine RVAs may have evolved through reassortment within the Japanese pig population. Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carried the rare H2 NSP5 genotype. Out of the 39 samples for which the NSP5 genotype could be determined, 23 (59.0%) were of genotype H2. H2 porcine RVAs consist exclusively of Japanese porcine RVAs and exhibit sequence diversity in each segment, suggesting that H2 porcine RVAs may have evolved through reassortment within the Japanese pig population.Group A rotavirus (RVA) sequences were detected in 10.8% (23/212) and 20.7% (87/421) of fecal samples collected in 2017-2022 from wild boars and domestic pigs, using next-generation sequencing. Complete genome sequence analysis of one wild boar and 13 domestic pig RVAs revealed that six of them carried the rare H2 NSP5 genotype. Out of the 39 samples for which the NSP5 genotype could be determined, 23 (59.0%) were of genotype H2. H2 porcine RVAs consist exclusively of Japanese porcine RVAs and exhibit sequence diversity in each segment, suggesting that H2 porcine RVAs may have evolved through reassortment within the Japanese pig population. |
| ArticleNumber | 63 |
| Author | Shizawa, Shigeki Fukuda, Fujiko Murakami, Hironobu Oi, Toru Masuda, Tsuneyuki Ishida, Hiroho Mizutani, Tetsuya Oba, Mami Kikkawa, Yasuhiro Takemae, Hitoshi Nagai, Makoto Sakaguchi, Shoichi |
| Author_xml | – sequence: 1 givenname: Shigeki surname: Shizawa fullname: Shizawa, Shigeki organization: School of Veterinary Medicine, Azabu University – sequence: 2 givenname: Fujiko surname: Fukuda fullname: Fukuda, Fujiko organization: Ishikawa Nanbu Livestock Hygiene Service Center – sequence: 3 givenname: Yasuhiro surname: Kikkawa fullname: Kikkawa, Yasuhiro organization: Global Pig Farm, Inc – sequence: 4 givenname: Toru surname: Oi fullname: Oi, Toru organization: Faculty of Bioresources and Environmental Science, Ishikawa Prefectural University – sequence: 5 givenname: Hitoshi surname: Takemae fullname: Takemae, Hitoshi organization: Center for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology – sequence: 6 givenname: Tsuneyuki surname: Masuda fullname: Masuda, Tsuneyuki organization: Faculty of Veterinary Medicine, Okayama University of Science – sequence: 7 givenname: Hiroho surname: Ishida fullname: Ishida, Hiroho organization: School of Veterinary Medicine, Azabu University – sequence: 8 givenname: Hironobu surname: Murakami fullname: Murakami, Hironobu organization: School of Veterinary Medicine, Azabu University – sequence: 9 givenname: Shoichi surname: Sakaguchi fullname: Sakaguchi, Shoichi organization: Department of Microbiology and Infection Control, Faculty of Medicine, Osaka Medical and Pharmaceutical University – sequence: 10 givenname: Tetsuya surname: Mizutani fullname: Mizutani, Tetsuya organization: Center for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology – sequence: 11 givenname: Makoto surname: Nagai fullname: Nagai, Makoto organization: School of Veterinary Medicine, Azabu University, Center for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology – sequence: 12 givenname: Mami orcidid: 0000-0002-4187-3217 surname: Oba fullname: Oba, Mami email: mamioba@go.tuat.ac.jp organization: School of Veterinary Medicine, Azabu University, Center for infectious Disease Epidemiology and Prevention Research, Tokyo University of Agriculture and Technology |
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| Title | Genomic diversity of group A rotaviruses from wild boars and domestic pigs in Japan: wide prevalence of NSP5 carrying the H2 genotype |
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