Analyzing architectural diversity in maize plants using the skeleton-image-based method
Shoot architecture in maize is critical since it determines resource use, impacts wind and rain damage tolerance, and affects yield stability. Quantifying the diversity among inbred lines in heterosis breeding is essential, especially when describing germplasm resources. However, traditional geometr...
Saved in:
| Published in | Journal of Integrative Agriculture Vol. 22; no. 12; pp. 3804 - 3809 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
Elsevier B.V
01.12.2023
College of Biological Sciences,China Agricultural University,Beijing 100193,P.R.China Center for Crop Functional Genomics and Molecular Breeding,China Agricultural University,Beijing 100193,P.R.China%Department of Biology,Northeastern Illinois University,Chicago 60625,USA Frontier Technology Research Institute of China Agricultural University in Shenzhen,Shenzhen 518000,P.R.China KeAi Communications Co., Ltd |
| Subjects | |
| Online Access | Get full text |
Cover
Loading…
| Abstract | Shoot architecture in maize is critical since it determines resource use, impacts wind and rain damage tolerance, and affects yield stability. Quantifying the diversity among inbred lines in heterosis breeding is essential, especially when describing germplasm resources. However, traditional geometric description methods oversimplify shoot architecture and ignore the plant’s overall architecture, making it difficult to reflect and illustrate diversity. This study presents a new method to describe maize shoot architecture and quantifies its diversity by combining computer vision algorithms and persistent homology. Our results reveal that persistent homology can capture key characteristics of shoot architecture in maize and other details often overlooked by traditional geometric analysis. Based on this method, the morphological diversity of shoot architecture can be mined (quantified), and the main shoot architecture types can be obtained. Consequently, this method can easily describe the diversity of shoot architecture in many maize materials. |
|---|---|
| AbstractList | Shoot architecture in maize is critical since it determines resource use, impacts wind and rain damage tolerance, and affects yield stability. Quantifying the diversity among inbred lines in heterosis breeding is essential, especially when describing germplasm resources. However, traditional geometric description methods oversimplify shoot architecture and ignore the plant’s overall architecture, making it difficult to reflect and illustrate diversity. This study presents a new method to describe maize shoot architecture and quantifies its diversity by combining computer vision algorithms and persistent homology. Our results reveal that persistent homology can capture key characteristics of shoot architecture in maize and other details often overlooked by traditional geometric analysis. Based on this method, the morphological diversity of shoot architecture can be mined (quantified), and the main shoot architecture types can be obtained. Consequently, this method can easily describe the diversity of shoot architecture in many maize materials. |
| Author | LIU, Min-guo CAMPBELL, Thomas LI, Wei WANG, Xi-qing |
| AuthorAffiliation | College of Biological Sciences,China Agricultural University,Beijing 100193,P.R.China;Frontier Technology Research Institute of China Agricultural University in Shenzhen,Shenzhen 518000,P.R.China;Center for Crop Functional Genomics and Molecular Breeding,China Agricultural University,Beijing 100193,P.R.China%Department of Biology,Northeastern Illinois University,Chicago 60625,USA |
| AuthorAffiliation_xml | – name: College of Biological Sciences,China Agricultural University,Beijing 100193,P.R.China;Frontier Technology Research Institute of China Agricultural University in Shenzhen,Shenzhen 518000,P.R.China;Center for Crop Functional Genomics and Molecular Breeding,China Agricultural University,Beijing 100193,P.R.China%Department of Biology,Northeastern Illinois University,Chicago 60625,USA |
| Author_xml | – sequence: 1 givenname: Min-guo surname: LIU fullname: LIU, Min-guo email: liumg@cau.edu.cn organization: College of Biological Sciences, China Agricultural University, Beijing 100193, P.R.China – sequence: 2 givenname: Thomas surname: CAMPBELL fullname: CAMPBELL, Thomas organization: Department of Biology, Northeastern Illinois University, Chicago 60625, USA – sequence: 3 givenname: Wei surname: LI fullname: LI, Wei organization: College of Biological Sciences, China Agricultural University, Beijing 100193, P.R.China – sequence: 4 givenname: Xi-qing surname: WANG fullname: WANG, Xi-qing email: wangxq21@cau.edu.cn organization: College of Biological Sciences, China Agricultural University, Beijing 100193, P.R.China |
| BookMark | eNp9kc1u1DAUhSNUJErpA7DLEhYJ13GcxGJVVfxUqsQGxNKyneuM04w92J6WmafHaRBLNrZlnfvp3HNeFxfOOyyKtwRqAqT7MNezlXUDDa2B1UD6F8VlQ1lT0bZhF_kNnFWUEP6quI5xBgDCGEA3XBY_b5xcTmfrplIGvbMJdToGuZSjfcQQbTqV1pV7ac9YHhbpUiyPcVWnHZbxARdM3lV2LyeslIw4lntMOz--KV4auUS8_ntfFT8-f_p--7W6__bl7vbmvtLZWqqoGpRs0PBGNYyTvtV9x-nQKwZGK8OAGIO84x12rJedJkS1miMFI7HVpKdXxd3GHb2cxSFkJ-EkvLTi-cOHSciQrF5QkJabfsgkyUyLDVPDoFiPcoRRAUfIrPcb60k6I90kZn8MOZ4ozpM7PfwWuEZM8rFq323aQ_C_jhiT2NuocckRoT9GQQmjbBiA0ywlm1QHH2NA888mAbH2J2aR-xMrXAAT8LzWx20Gc3aPFoOI2qLTONqQG8rL2f9M_wGGVKTa |
| Cites_doi | 10.1104/pp.16.01516 10.1111/1467-9868.00293 10.1007/s00122-010-1320-y 10.1093/jxb/erz394 10.2134/agronj2003.1465 10.4238/2013.April.17.3 10.12688/f1000research.13541.1 10.3732/ajb.1700046 10.1126/science.aax5482 10.1016/S2095-3119(17)61785-4 10.2135/cropsci1971.0011183X001100040006x 10.2135/cropsci1978.0011183X001800030037x 10.1016/j.eswa.2008.01.039 10.3390/genes10090664 10.1016/j.pbi.2006.01.013 10.1007/s11032-010-9500-7 10.1038/hdy.2016.88 10.3389/fpls.2021.614926 10.3126/jnarc.v2i0.16119 10.7717/peerj.4088 10.1016/j.jia.2022.08.006 10.1105/tpc.16.00477 10.1186/s12870-022-03470-7 |
| ContentType | Journal Article |
| Copyright | 2023 CAAS. Publishing services by Elsevier B.V Copyright © Wanfang Data Co. Ltd. All Rights Reserved. |
| Copyright_xml | – notice: 2023 CAAS. Publishing services by Elsevier B.V – notice: Copyright © Wanfang Data Co. Ltd. All Rights Reserved. |
| DBID | 6I. AAFTH AAYXX CITATION 7S9 L.6 2B. 4A8 92I 93N PSX TCJ DOA |
| DOI | 10.1016/j.jia.2023.05.017 |
| DatabaseName | ScienceDirect Open Access Titles Elsevier:ScienceDirect:Open Access CrossRef AGRICOLA AGRICOLA - Academic Wanfang Data Journals - Hong Kong WANFANG Data Centre Wanfang Data Journals 万方数据期刊 - 香港版 China Online Journals (COJ) China Online Journals (COJ) DOAJ Directory of Open Access Journals |
| DatabaseTitle | CrossRef AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | AGRICOLA |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Agriculture |
| EISSN | 2352-3425 |
| EndPage | 3809 |
| ExternalDocumentID | oai_doaj_org_article_149f786e6a5f4e25b88b57ead0db09e0 zgnykx_e202312020 10_1016_j_jia_2023_05_017 S2095311923001429 |
| GroupedDBID | --M -04 -0D -SD -S~ .~1 0R~ 0SF 1B1 1~. 1~5 2B. 2B~ 4.4 457 4G. 5VR 6I. 7-5 8P~ 92G 92I 92M 93N 93Q 9D9 9DD AABNK AABVA AACTN AAEDT AAEDW AAFTH AAIAV AAIKJ AAKOC AALRI AAOAW AATLK AAXDM AAXUO ABGRD ABMAC ABXDB ACDAQ ACGFS ACRLP ADEZE ADMUD ADQTV AEBSH AEKER AENEX AEQOU AFKWA AFTJW AFUIB AFXIZ AGHFR AGUBO AGYEJ AIEXJ AIKHN AITUG AJOXV AKRWK ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ AXJTR BKOJK BLXMC CAJED CAJUS CCEZO CHDYS EBS EFJIC EJD FA0 FDB FIRID FNPLU FYGXN GBLVA GROUPED_DOAJ HZ~ JUIAU KOM M41 MO0 NCXOZ O-L O9- OAUVE OK1 P-8 P-9 PC. Q-- Q-3 Q38 R-D RIG ROL RT4 SDF SDG SES SSA SSZ T5K T8T TCJ TGD U1F U1G U5D U5N ~G- AAHBH AATTM AAXKI AAYWO AAYXX ABJNI ABWVN ACRPL ACVFH ADCNI ADNMO ADVLN AEIPS AEUPX AFJKZ AFPUW AGCQF AGRNS AIGII AIIUN AKBMS AKYEP ANKPU APXCP BNPGV CITATION SSH 7S9 EFKBS L.6 4A8 PSX |
| ID | FETCH-LOGICAL-c425t-3b8ba2ef92b259174c769387b50fcbf501ffe9696e657a6c11b4c9e30fae4c173 |
| IEDL.DBID | .~1 |
| ISSN | 2095-3119 |
| IngestDate | Wed Aug 27 01:30:34 EDT 2025 Thu May 29 03:54:12 EDT 2025 Mon Jul 21 11:47:53 EDT 2025 Tue Jul 01 03:31:24 EDT 2025 Sat Jun 01 15:42:11 EDT 2024 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 12 |
| Keywords | maize shoot architecture phenotyping technology morphological diversity persistent homology |
| Language | English |
| License | This is an open access article under the CC BY-NC-ND license. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c425t-3b8ba2ef92b259174c769387b50fcbf501ffe9696e657a6c11b4c9e30fae4c173 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| OpenAccessLink | https://www.sciencedirect.com/science/article/pii/S2095311923001429 |
| PQID | 3153588093 |
| PQPubID | 24069 |
| PageCount | 6 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_149f786e6a5f4e25b88b57ead0db09e0 wanfang_journals_zgnykx_e202312020 proquest_miscellaneous_3153588093 crossref_primary_10_1016_j_jia_2023_05_017 elsevier_sciencedirect_doi_10_1016_j_jia_2023_05_017 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | 2023-12-01 |
| PublicationDateYYYYMMDD | 2023-12-01 |
| PublicationDate_xml | – month: 12 year: 2023 text: 2023-12-01 day: 01 |
| PublicationDecade | 2020 |
| PublicationTitle | Journal of Integrative Agriculture |
| PublicationTitle_FL | Journal of Integrative Agriculture |
| PublicationYear | 2023 |
| Publisher | Elsevier B.V College of Biological Sciences,China Agricultural University,Beijing 100193,P.R.China Center for Crop Functional Genomics and Molecular Breeding,China Agricultural University,Beijing 100193,P.R.China%Department of Biology,Northeastern Illinois University,Chicago 60625,USA Frontier Technology Research Institute of China Agricultural University in Shenzhen,Shenzhen 518000,P.R.China KeAi Communications Co., Ltd |
| Publisher_xml | – name: Elsevier B.V – name: Center for Crop Functional Genomics and Molecular Breeding,China Agricultural University,Beijing 100193,P.R.China%Department of Biology,Northeastern Illinois University,Chicago 60625,USA – name: Frontier Technology Research Institute of China Agricultural University in Shenzhen,Shenzhen 518000,P.R.China – name: College of Biological Sciences,China Agricultural University,Beijing 100193,P.R.China – name: KeAi Communications Co., Ltd |
| References | Csardi, Nepusz (bib3) 2006; 1695 Zheng, Liu (bib31) 2013; 12 Bouchet, Bertin, Presterl, Jamin, Coubriche, Gouesnard, Laborde, Charcosset (bib1) 2017; 118 Fei, Lu, Jiang, Liu, Yao, Qu, Liu, Guan, Ma (bib9) 2022; 22 Gao, Li, Yang, Li, Song, Wang, Li, Shi (bib10) 2023; 22 Fasoula, Fasoula (bib7) 2010; 18 Xue, Xie, Zhang, Wang, Hou, Bo, Gou, Li (bib27) 2017; 16 Park, Jun (bib18) 2009; 36 Strable, Wallace, Unger-Wallace, Briggs, Bradbury, Buckler, Vollbrecht (bib23) 2017; 29 Smith, Smith (bib21) 1989; 34 Stewart, Costa, Dwyer, Smith, Hamilton, Ma (bib22) 2003; 95 Li, Duncan, Topp, Chitwood (bib14) 2017; 104 Lambert, Johnson (bib13) 1978; 18 Li, Klein, Duncan, Jiang, Chitwood, Londo, Miller, Topp (bib15) 2019; 70 Kassambara (bib12) 2019 Zhang, Huang, Wu, Qiao, Li, Duan, Wang, Xiao, Chen, Liu, Xiong, Yang, Yan (bib30) 2017; 173 Delory, Li, Topp, Lobet (bib4) 2018; 7 Yang, Yan, Shah, Warburton, Li, Li, Gao, Chai, Fu, Zhou, Xu, Bai, Meng, Zheng, Li (bib29) 2010; 121 Li, Wei, Wang, Fang, Yin, Xu, Liu, Yang, Xu (bib16) 2019; 10 Buckler, Gaut, McMullen (bib2) 2006; 9 Dhakal, Zhu, Zhang, Li, Li (bib5) 2021; 12 Tian, Wang, Xia, Wu, Xu, Wu, Dan, Qin, Han, Chen, Jin, Tian (bib25) 2019; 365 Duncan (bib6) 1971; 11 R Core Team (bib19) 2021 Maechler, Rousseeuw, Struyf, Hubert, Hornik (bib17) 2021 Tausz, Vejdemo-Johansson, Adams (bib24) 2014; vol. 8592 Gehan, Fahlgren, Abbasi, Berry, Callen, Chavez, Doust, Feldman, Gibert, Hodge, Hoyer, Lin, Liu, Lizárraga, Lorence, Miller, Platon, Tessman, Sax (bib11) 2017; 5 Fasy, Kim, Lecci, Maria, Millman, Rouvreau (bib8) 2021 Yang, Gao, Xu, Zhang, Prasanna, Li, Li, Yan (bib28) 2011; 28 Shrestha (bib20) 2016; 2 Tibshirani, Walther, Hastie (bib26) 2001; 63 Csardi (10.1016/j.jia.2023.05.017_bib3) 2006; 1695 Delory (10.1016/j.jia.2023.05.017_bib4) 2018; 7 Yang (10.1016/j.jia.2023.05.017_bib29) 2010; 121 Tian (10.1016/j.jia.2023.05.017_bib25) 2019; 365 Gehan (10.1016/j.jia.2023.05.017_bib11) 2017; 5 R Core Team (10.1016/j.jia.2023.05.017_bib19) 2021 Tibshirani (10.1016/j.jia.2023.05.017_bib26) 2001; 63 Yang (10.1016/j.jia.2023.05.017_bib28) 2011; 28 Xue (10.1016/j.jia.2023.05.017_bib27) 2017; 16 Li (10.1016/j.jia.2023.05.017_bib15) 2019; 70 Fasy (10.1016/j.jia.2023.05.017_bib8) Park (10.1016/j.jia.2023.05.017_bib18) 2009; 36 Stewart (10.1016/j.jia.2023.05.017_bib22) 2003; 95 Fei (10.1016/j.jia.2023.05.017_bib9) 2022; 22 Kassambara (10.1016/j.jia.2023.05.017_bib12) Buckler (10.1016/j.jia.2023.05.017_bib2) 2006; 9 Dhakal (10.1016/j.jia.2023.05.017_bib5) 2021; 12 Maechler (10.1016/j.jia.2023.05.017_bib17) Zhang (10.1016/j.jia.2023.05.017_bib30) 2017; 173 Strable (10.1016/j.jia.2023.05.017_bib23) 2017; 29 Smith (10.1016/j.jia.2023.05.017_bib21) 1989; 34 Fasoula (10.1016/j.jia.2023.05.017_bib7) 2010; 18 Duncan (10.1016/j.jia.2023.05.017_bib6) 1971; 11 Li (10.1016/j.jia.2023.05.017_bib14) 2017; 104 Tausz (10.1016/j.jia.2023.05.017_bib24) 2014; vol. 8592 Shrestha (10.1016/j.jia.2023.05.017_bib20) 2016; 2 Gao (10.1016/j.jia.2023.05.017_bib10) 2023; 22 Zheng (10.1016/j.jia.2023.05.017_bib31) 2013; 12 Li (10.1016/j.jia.2023.05.017_bib16) 2019; 10 Lambert (10.1016/j.jia.2023.05.017_bib13) 1978; 18 Bouchet (10.1016/j.jia.2023.05.017_bib1) 2017; 118 |
| References_xml | – volume: 22 start-page: 691 year: 2023 end-page: 700 ident: bib10 article-title: Changes in grain-filling characteristics of single-cross maize hybrids released in China from 1964 to 2014 publication-title: Journal of Integrative Agriculture – volume: 5 year: 2017 ident: bib11 article-title: PlantCV v2: Image analysis software for high-throughput plant phenotyping publication-title: PeerJ – volume: 7 start-page: 22 year: 2018 ident: bib4 article-title: ArchiDART v3. 0: A new data analysis pipeline allowing the topological analysis of plant root systems publication-title: F1000Research – year: 2019 ident: bib12 article-title: Ggcorrplot: Visualization of a correlation matrix using “ggplot2.” [2022-2-12] – volume: 173 start-page: 1554 year: 2017 end-page: 1564 ident: bib30 article-title: High-throughput phenotyping and QTL mapping reveals the genetic architecture of maize plant growth publication-title: Plant Physiology – volume: 28 start-page: 511 year: 2011 end-page: 526 ident: bib28 article-title: Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize publication-title: Molecular Breeding – volume: 104 start-page: 349 year: 2017 end-page: 353 ident: bib14 article-title: Persistent homology and the branching topologies of plants publication-title: American Journal of Botany – year: 2021 ident: bib8 article-title: TDA: Statistical tools for topological data analysis. [2022-04-03] – year: 2021 ident: bib19 article-title: R: A language and environment for statistical computing – volume: 9 start-page: 172 year: 2006 end-page: 176 ident: bib2 article-title: Molecular and functional diversity of maize publication-title: Current Opinion in Plant Biology – volume: 12 start-page: 1243 year: 2013 end-page: 1253 ident: bib31 article-title: Genetic analysis of agronomic traits associated with plant architecture by QTL mapping in maize publication-title: Genetics Molecular Research – volume: 70 start-page: 6261 year: 2019 end-page: 6276 ident: bib15 article-title: Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: Implications for understanding cluster density publication-title: Journal of Experimental Botany – volume: 18 start-page: 177 year: 2010 ident: bib7 article-title: Honeycomb breeding: Principles and applications publication-title: Plant Breeding Reviews – volume: 16 start-page: 2717 year: 2017 end-page: 2725 ident: bib27 article-title: Research progress on reduced lodging of high-yield and-density maize publication-title: Journal of Integrative Agriculture – volume: 121 start-page: 417 year: 2010 end-page: 431 ident: bib29 article-title: Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection publication-title: Theoretical and Applied Genetics – volume: 29 start-page: 1622 year: 2017 end-page: 1641 ident: bib23 article-title: Maize publication-title: The Plant Cell – volume: 11 start-page: 482 year: 1971 end-page: 485 ident: bib6 article-title: Leaf angles, leaf area, and canopy photosy-nthesis publication-title: Crop Science – year: 2021 ident: bib17 article-title: Cluster: Cluster analysis basics and extensions. [2022-5-12] – volume: 2 start-page: 33 year: 2016 end-page: 36 ident: bib20 article-title: Cluster analysis of maize inbred lines publication-title: Journal of Nepal Agricultural Research Council – volume: 63 start-page: 411 year: 2001 end-page: 423 ident: bib26 article-title: Estimating the number of clusters in a data set publication-title: Journal of the Royal Statistical Society (Series B: Statistical Methodology) – volume: 22 start-page: 110 year: 2022 ident: bib9 article-title: Maize plant architecture trait QTL mapping and candidate gene identification based on multiple environments and double populations publication-title: BMC Plant Biology – volume: 1695 start-page: 1 year: 2006 end-page: 9 ident: bib3 article-title: The igraph software package for complex network research publication-title: InterJournal Complex Systems – volume: 12 start-page: 249 year: 2021 ident: bib5 article-title: Analysis of shoot architecture traits in edamame reveals potential strategies to improve harvest efficiency publication-title: Frontiers in Plant Science – volume: 95 start-page: 1465 year: 2003 end-page: 1474 ident: bib22 article-title: Canopy structure, light interception, and photosynthesis in maize publication-title: Agronomy Journal – volume: 10 start-page: 664 year: 2019 ident: bib16 article-title: Natural variation and domestication selection of publication-title: Genes – volume: 365 start-page: 658 year: 2019 end-page: 664 ident: bib25 article-title: Teosinte ligule allele narrows plant architecture and enhances high-density maize yields publication-title: Science – volume: 118 start-page: 249 year: 2017 end-page: 259 ident: bib1 article-title: Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits publication-title: Heredity – volume: 34 start-page: 151 year: 1989 end-page: 161 ident: bib21 article-title: The description and assessment of distances between inbred lines of maize. II: The utility of morphological biochemical, and genetic descriptors and a scheme for the testing of distinctiveness between inbred lines publication-title: Maydica – volume: 18 start-page: 499 year: 1978 end-page: 502 ident: bib13 article-title: Leaf angle, tassel morphology, and the performance of maize hybrids publication-title: Crop Science – volume: vol. 8592 start-page: 129 year: 2014 end-page: 136 ident: bib24 article-title: JavaPlex: A research software package for persistent (co) homology publication-title: Proceedings of ICMS (International Congress on Mathematical Software) 2014. Lecture Notes in Computer Science – volume: 36 start-page: 3336 year: 2009 end-page: 3341 ident: bib18 article-title: A simple and fast algorithm for K-medoids clustering publication-title: Expert Systems with Applications – volume: 173 start-page: 1554 year: 2017 ident: 10.1016/j.jia.2023.05.017_bib30 article-title: High-throughput phenotyping and QTL mapping reveals the genetic architecture of maize plant growth publication-title: Plant Physiology doi: 10.1104/pp.16.01516 – ident: 10.1016/j.jia.2023.05.017_bib8 – volume: 63 start-page: 411 year: 2001 ident: 10.1016/j.jia.2023.05.017_bib26 article-title: Estimating the number of clusters in a data set via the gap statistic publication-title: Journal of the Royal Statistical Society (Series B: Statistical Methodology) doi: 10.1111/1467-9868.00293 – volume: 121 start-page: 417 year: 2010 ident: 10.1016/j.jia.2023.05.017_bib29 article-title: Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection publication-title: Theoretical and Applied Genetics doi: 10.1007/s00122-010-1320-y – volume: 70 start-page: 6261 year: 2019 ident: 10.1016/j.jia.2023.05.017_bib15 article-title: Characterizing 3D inflorescence architecture in grapevine using X-ray imaging and advanced morphometrics: Implications for understanding cluster density publication-title: Journal of Experimental Botany doi: 10.1093/jxb/erz394 – volume: 95 start-page: 1465 year: 2003 ident: 10.1016/j.jia.2023.05.017_bib22 article-title: Canopy structure, light interception, and photosynthesis in maize publication-title: Agronomy Journal doi: 10.2134/agronj2003.1465 – volume: 12 start-page: 1243 year: 2013 ident: 10.1016/j.jia.2023.05.017_bib31 article-title: Genetic analysis of agronomic traits associated with plant architecture by QTL mapping in maize publication-title: Genetics Molecular Research doi: 10.4238/2013.April.17.3 – ident: 10.1016/j.jia.2023.05.017_bib17 – volume: 7 start-page: 22 year: 2018 ident: 10.1016/j.jia.2023.05.017_bib4 article-title: ArchiDART v3. 0: A new data analysis pipeline allowing the topological analysis of plant root systems publication-title: F1000Research doi: 10.12688/f1000research.13541.1 – volume: 104 start-page: 349 year: 2017 ident: 10.1016/j.jia.2023.05.017_bib14 article-title: Persistent homology and the branching topologies of plants publication-title: American Journal of Botany doi: 10.3732/ajb.1700046 – volume: 365 start-page: 658 year: 2019 ident: 10.1016/j.jia.2023.05.017_bib25 article-title: Teosinte ligule allele narrows plant architecture and enhances high-density maize yields publication-title: Science doi: 10.1126/science.aax5482 – volume: 16 start-page: 2717 year: 2017 ident: 10.1016/j.jia.2023.05.017_bib27 article-title: Research progress on reduced lodging of high-yield and-density maize publication-title: Journal of Integrative Agriculture doi: 10.1016/S2095-3119(17)61785-4 – volume: 11 start-page: 482 year: 1971 ident: 10.1016/j.jia.2023.05.017_bib6 article-title: Leaf angles, leaf area, and canopy photosy-nthesis publication-title: Crop Science doi: 10.2135/cropsci1971.0011183X001100040006x – ident: 10.1016/j.jia.2023.05.017_bib12 – volume: 18 start-page: 499 year: 1978 ident: 10.1016/j.jia.2023.05.017_bib13 article-title: Leaf angle, tassel morphology, and the performance of maize hybrids publication-title: Crop Science doi: 10.2135/cropsci1978.0011183X001800030037x – volume: 36 start-page: 3336 year: 2009 ident: 10.1016/j.jia.2023.05.017_bib18 article-title: A simple and fast algorithm for K-medoids clustering publication-title: Expert Systems with Applications doi: 10.1016/j.eswa.2008.01.039 – volume: 10 start-page: 664 year: 2019 ident: 10.1016/j.jia.2023.05.017_bib16 article-title: Natural variation and domestication selection of zmpgp1 affects plant architecture and yield-related traits in maize publication-title: Genes doi: 10.3390/genes10090664 – volume: 9 start-page: 172 year: 2006 ident: 10.1016/j.jia.2023.05.017_bib2 article-title: Molecular and functional diversity of maize publication-title: Current Opinion in Plant Biology doi: 10.1016/j.pbi.2006.01.013 – volume: 18 start-page: 177 year: 2010 ident: 10.1016/j.jia.2023.05.017_bib7 article-title: Honeycomb breeding: Principles and applications publication-title: Plant Breeding Reviews – year: 2021 ident: 10.1016/j.jia.2023.05.017_bib19 – volume: 28 start-page: 511 year: 2011 ident: 10.1016/j.jia.2023.05.017_bib28 article-title: Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize publication-title: Molecular Breeding doi: 10.1007/s11032-010-9500-7 – volume: 118 start-page: 249 year: 2017 ident: 10.1016/j.jia.2023.05.017_bib1 article-title: Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits publication-title: Heredity doi: 10.1038/hdy.2016.88 – volume: 12 start-page: 249 year: 2021 ident: 10.1016/j.jia.2023.05.017_bib5 article-title: Analysis of shoot architecture traits in edamame reveals potential strategies to improve harvest efficiency publication-title: Frontiers in Plant Science doi: 10.3389/fpls.2021.614926 – volume: 2 start-page: 33 year: 2016 ident: 10.1016/j.jia.2023.05.017_bib20 article-title: Cluster analysis of maize inbred lines publication-title: Journal of Nepal Agricultural Research Council doi: 10.3126/jnarc.v2i0.16119 – volume: 1695 start-page: 1 year: 2006 ident: 10.1016/j.jia.2023.05.017_bib3 article-title: The igraph software package for complex network research publication-title: InterJournal Complex Systems – volume: 34 start-page: 151 year: 1989 ident: 10.1016/j.jia.2023.05.017_bib21 article-title: The description and assessment of distances between inbred lines of maize. II: The utility of morphological biochemical, and genetic descriptors and a scheme for the testing of distinctiveness between inbred lines publication-title: Maydica – volume: 5 year: 2017 ident: 10.1016/j.jia.2023.05.017_bib11 article-title: PlantCV v2: Image analysis software for high-throughput plant phenotyping publication-title: PeerJ doi: 10.7717/peerj.4088 – volume: 22 start-page: 691 year: 2023 ident: 10.1016/j.jia.2023.05.017_bib10 article-title: Changes in grain-filling characteristics of single-cross maize hybrids released in China from 1964 to 2014 publication-title: Journal of Integrative Agriculture doi: 10.1016/j.jia.2022.08.006 – volume: 29 start-page: 1622 year: 2017 ident: 10.1016/j.jia.2023.05.017_bib23 article-title: Maize YABBY genes drooping leaf1 and drooping leaf2 regulate plant architecture publication-title: The Plant Cell doi: 10.1105/tpc.16.00477 – volume: 22 start-page: 110 year: 2022 ident: 10.1016/j.jia.2023.05.017_bib9 article-title: Maize plant architecture trait QTL mapping and candidate gene identification based on multiple environments and double populations publication-title: BMC Plant Biology doi: 10.1186/s12870-022-03470-7 – volume: vol. 8592 start-page: 129 year: 2014 ident: 10.1016/j.jia.2023.05.017_bib24 article-title: JavaPlex: A research software package for persistent (co) homology |
| SSID | ssj0001550068 |
| Score | 2.308 |
| Snippet | Shoot architecture in maize is critical since it determines resource use, impacts wind and rain damage tolerance, and affects yield stability. Quantifying the... Shoot architecture in maize is critical since it determines resource use,impacts wind and rain damage tolerance,and affects yield stability.Quantifying the... |
| SourceID | doaj wanfang proquest crossref elsevier |
| SourceType | Open Website Aggregation Database Index Database Publisher |
| StartPage | 3804 |
| SubjectTerms | agriculture computer vision corn germplasm heterosis maize morphological diversity persistent homology phenotyping technology rain damage shoot architecture wind |
| SummonAdditionalLinks | – databaseName: DOAJ Directory of Open Access Journals dbid: DOA link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1La9wwEBZhoZAeStokdPNCDT0VTPySZR03pWHpoaeG5CY08sg46TphH5Tur8_IsoNzSS69-LDY2tXMznzfoPE3jH1V1lWmtCpKCwlRbpWMwEIZWYGK6iFCBOy6fH8V8-v85624HY368j1hQR44GO6CGLyTZYGFES7HVEBZgpC0_7iCWGFXrRPmjYqp8H6w8C8_-MlyxCEo0SRqONLsmrvuGq85lGZBtVO-AKVOu_8FNo2457u_pnWmrUcgdLXHPvTskc_Cr_7IdrD9xN7P6mWvoIH77KaTGdkSIvHRIQE9VA0dGLxp-cI0W-SPf3wXDPe97zUnJshX94RCfqhws6A8E3mIq3gYMn3Arq9-_P4-j_rpCZGlOFxHGZRgUnQqBSpxqPCwfuxhKUHEzoITceIcem0cLIQ0hU0SIFdhFjuDuU1kdsgm7UOLnxmnQAJVQAquynJnhaEgTkqFFqRwsqqm7NtgPv0YRDL00D12p8nW2ttax0KTrafs0hv4-Uavb919QF7Xvdf1W16fsnxwj-6pQqAAtFTz2nd_GVypKYz82Yhp8WGz0hllfkG5TGVTdt77WPfhvNLbuv13T4nEL5XQJT76H5s4Zrt-wdAcc8Im6-UGT4nirOGs-zc_ATgU-T0 priority: 102 providerName: Directory of Open Access Journals |
| Title | Analyzing architectural diversity in maize plants using the skeleton-image-based method |
| URI | https://dx.doi.org/10.1016/j.jia.2023.05.017 https://www.proquest.com/docview/3153588093 https://d.wanfangdata.com.cn/periodical/zgnykx-e202312020 https://doaj.org/article/149f786e6a5f4e25b88b57ead0db09e0 |
| Volume | 22 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LixQxEA7LiqAH8YnjY4jiSYiTfqTTOY6Ly6iwF13cW0jSSdO7bs8wM4s4B3-7Vem0zlw8eGnokBdVqVdS-ULIG-VCY2qnWF5Jy0qnJLPO1swJryAeAovgY5bvWbU4Lz9diIsjcjLehcG0yqT7B50etXUqmSVqzlZdN_uSI1Rahh4K-vk5XuIrS4mr_N2v7O8-C7jgPN6Iw_oMG4yHmzHN67JD9KG8GPA75YF5iij-B1Zqzwu9_cP0wfTtnjk6vU_uJT-SzoepPiBHvn9I7s7bdcLS8I_Itwg4sgPbRPeOC6BRM-Zi0K6n16bbebr6jvkwFLPgWwo-Id1cgT3C54W7a9A4DI1dQ4fnph-T89MPX08WLL2jwBxI5JYVtrYm90HlFoIdCEEcPoBYSyt4cDYInoXgESXHV0KaymWZBab5ggfjS5fJ4gk57pe9f0ooiJRVlc1taIoyOGFAnLNaeWelCLJpJuTtSD69GuAy9JhHdqmB1hpprbnQQOsJeY8E_lMRka5jwXLd6sRqCE1UkDVMzYhQ-lzYurZCwvrnjeXK8wkpR_bog4UDXXX_GvvVyEoNAoWnJKb3y5uNLsAGCNBqqpiQ14nHOgn2Ru_a_ucVqBTsKoMPf_Z_4z8nd_BvSIx5QY636xv_EtybrZ3G9Tslt-YfPy_OpnGT4DfZwfsP |
| linkProvider | Elsevier |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lb9QwELZKEQIOiKdYoGAQXJDCJk4cx4ceyqPa0tILrejN2I4dpaXZ1e5WVffAn-of7EziwO6FA1IvOeThOGP7m8_x5xlC3krrS11YGbFcmCizUkTGmiKy3EmYD4FHcK3Kdz8fHWZfj_jRGrns98KgrDJgf4fpLVqHM8NgzeGkroffGYZKS5ChIM9nMigrd93FOczbZps7n6GR3zG2_eXg0ygKqQUiC510HqWmMJo5L5kB_g-s3GJOwEIYHntrPI8T7x0GjnE5Fzq3SWLgO1wae-0ym4gUyr1BbmYAF5g24cPv5O-PHeD8cbsFDysYYQ371dRWV3ZcY7gjlnYBQ8WKP2zTBqy4xSXae-tcN1431ZL_275P7gXiSrc62zwga655SO5uVdMQvMM9Ij_aCCcLcIZ0aX0CHip78QetG3qq64Wjk18owKEou68okFA6OwEHiPmM61OAuAi9a0m7_NaPyeG1WPcJWW_GjXtKKIxhI3PDjC_TzFuuAT-SQjprBPeiLAfkfW8-Nenic6heuHaswNYKba1irsDWA_IRDfznRgyt3Z4YTysV-hbMhaQXBVRNc585xk1RGC5gwMWliaWLByTrm0et9FQoqv7Xu1_3TalgBOOyjG7c-GymUnA6HGBUpgPyJrSxCkgyU4uquTgBDMOiEjjEz_7v_a_I7dHBtz21t7O_-5zcwSudKucFWZ9Pz9wGcKu5edn2ZUp-XvfguQK2UjYP |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Analyzing+architectural+diversity+in+maize+plants+using+the+skeleton-image-based+method&rft.jtitle=Journal+of+Integrative+Agriculture&rft.au=LIU%2C+Min-guo&rft.au=CAMPBELL%2C+Thomas&rft.au=LI%2C+Wei&rft.au=WANG%2C+Xi-qing&rft.date=2023-12-01&rft.issn=2095-3119&rft.volume=22&rft.issue=12&rft.spage=3804&rft.epage=3809&rft_id=info:doi/10.1016%2Fj.jia.2023.05.017&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_jia_2023_05_017 |
| thumbnail_s | http://utb.summon.serialssolutions.com/2.0.0/image/custom?url=http%3A%2F%2Fwww.wanfangdata.com.cn%2Fimages%2FPeriodicalImages%2Fzgnykx-e%2Fzgnykx-e.jpg |