Aryl Hydrocarbon Receptor Mediates Larval Zebrafish Fin Duplication Following Exposure to Benzofluoranthenes

Abstract The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using embryonic zebrafish, we previously identified 4 polycyclic aromatic hydrocarbons that caused a novel phenotype among AHR ligands—growth of a la...

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Published inToxicological sciences Vol. 176; no. 1; pp. 46 - 64
Main Authors Garland, Michael A, Geier, Mitra C, Bugel, Sean M, Shankar, Prarthana, Dunham, Cheryl L, Brown, Joseph M, Tilton, Susan C, Tanguay, Robyn L
Format Journal Article
LanguageEnglish
Published United States Oxford University Press 01.07.2020
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Abstract Abstract The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using embryonic zebrafish, we previously identified 4 polycyclic aromatic hydrocarbons that caused a novel phenotype among AHR ligands—growth of a lateral, duplicate caudal fin fold. The window of sensitivity to the most potent inducer of this phenotype, benzo[k]fluoranthene (BkF), was prior to 36 h postfertilization (hpf), although the phenotype was not manifest until 60 hpf. AHR dependency via Ahr2 was demonstrated using morpholino knockdown. Hepatocyte ablation demonstrated that hepatic metabolism of BkF was not required for the phenotype, nor was it responsible for the window of sensitivity. RNA sequencing performed on caudal trunk tissue from BkF-exposed animals collected at 48, 60, 72, and 96 hpf showed upregulation of genes associated with AHR activation, appendage development, and tissue patterning. Genes encoding fibroblast growth factor and bone morphogenic protein ligands, along with retinaldehyde dehydrogenase, were prominently upregulated. Gene Ontology term analysis revealed that upregulated genes were enriched for mesoderm development and fin regeneration, whereas downregulated genes were enriched for Wnt signaling and neuronal development. MetaCore (Clarivate Analytics) systems analysis of orthologous human genes predicted that R-SMADs, AP-1, and LEF1 regulated the expression of an enriched number of gene targets across all time points. Our results demonstrate a novel aspect of AHR activity with implications for developmental processes conserved across vertebrate species.
AbstractList Abstract The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using embryonic zebrafish, we previously identified 4 polycyclic aromatic hydrocarbons that caused a novel phenotype among AHR ligands—growth of a lateral, duplicate caudal fin fold. The window of sensitivity to the most potent inducer of this phenotype, benzo[k]fluoranthene (BkF), was prior to 36 h postfertilization (hpf), although the phenotype was not manifest until 60 hpf. AHR dependency via Ahr2 was demonstrated using morpholino knockdown. Hepatocyte ablation demonstrated that hepatic metabolism of BkF was not required for the phenotype, nor was it responsible for the window of sensitivity. RNA sequencing performed on caudal trunk tissue from BkF-exposed animals collected at 48, 60, 72, and 96 hpf showed upregulation of genes associated with AHR activation, appendage development, and tissue patterning. Genes encoding fibroblast growth factor and bone morphogenic protein ligands, along with retinaldehyde dehydrogenase, were prominently upregulated. Gene Ontology term analysis revealed that upregulated genes were enriched for mesoderm development and fin regeneration, whereas downregulated genes were enriched for Wnt signaling and neuronal development. MetaCore (Clarivate Analytics) systems analysis of orthologous human genes predicted that R-SMADs, AP-1, and LEF1 regulated the expression of an enriched number of gene targets across all time points. Our results demonstrate a novel aspect of AHR activity with implications for developmental processes conserved across vertebrate species.
The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using embryonic zebrafish, we previously identified 4 polycyclic aromatic hydrocarbons that caused a novel phenotype among AHR ligands-growth of a lateral, duplicate caudal fin fold. The window of sensitivity to the most potent inducer of this phenotype, benzo[k]fluoranthene (BkF), was prior to 36 h postfertilization (hpf), although the phenotype was not manifest until 60 hpf. AHR dependency via Ahr2 was demonstrated using morpholino knockdown. Hepatocyte ablation demonstrated that hepatic metabolism of BkF was not required for the phenotype, nor was it responsible for the window of sensitivity. RNA sequencing performed on caudal trunk tissue from BkF-exposed animals collected at 48, 60, 72, and 96 hpf showed upregulation of genes associated with AHR activation, appendage development, and tissue patterning. Genes encoding fibroblast growth factor and bone morphogenic protein ligands, along with retinaldehyde dehydrogenase, were prominently upregulated. Gene Ontology term analysis revealed that upregulated genes were enriched for mesoderm development and fin regeneration, whereas downregulated genes were enriched for Wnt signaling and neuronal development. MetaCore (Clarivate Analytics) systems analysis of orthologous human genes predicted that R-SMADs, AP-1, and LEF1 regulated the expression of an enriched number of gene targets across all time points. Our results demonstrate a novel aspect of AHR activity with implications for developmental processes conserved across vertebrate species.
The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using embryonic zebrafish, we previously identified 4 polycyclic aromatic hydrocarbons that caused a novel phenotype among AHR ligands—growth of a lateral, duplicate caudal fin fold. The window of sensitivity to the most potent inducer of this phenotype, benzo[ k ]fluoranthene (B k F), was prior to 36 h postfertilization (hpf), although the phenotype was not manifest until 60 hpf. AHR dependency via Ahr2 was demonstrated using morpholino knockdown. Hepatocyte ablation demonstrated that hepatic metabolism of B k F was not required for the phenotype, nor was it responsible for the window of sensitivity. RNA sequencing performed on caudal trunk tissue from B k F-exposed animals collected at 48, 60, 72, and 96 hpf showed upregulation of genes associated with AHR activation, appendage development, and tissue patterning. Genes encoding fibroblast growth factor and bone morphogenic protein ligands, along with retinaldehyde dehydrogenase, were prominently upregulated. Gene Ontology term analysis revealed that upregulated genes were enriched for mesoderm development and fin regeneration, whereas downregulated genes were enriched for Wnt signaling and neuronal development. MetaCore (Clarivate Analytics) systems analysis of orthologous human genes predicted that R-SMADs, AP-1, and LEF1 regulated the expression of an enriched number of gene targets across all time points. Our results demonstrate a novel aspect of AHR activity with implications for developmental processes conserved across vertebrate species.
Author Brown, Joseph M
Shankar, Prarthana
Geier, Mitra C
Bugel, Sean M
Dunham, Cheryl L
Garland, Michael A
Tanguay, Robyn L
Tilton, Susan C
AuthorAffiliation k2 Department of Environmental and Molecular Toxicology
k4 Computational Biology and Bioinformatics, Pacific Northwest National Laboratories , Richland, Washington 99352
k7 Department of Human Genetics , University of Utah, Salt Lake City, UT 84112
k1 Sinnhuber Aquatic Research Laboratory
k6 Department of Pesticide Regulation , California Environmental Protection Agency, Sacramento, CA 95814
k3 Superfund Research Program, Oregon State University , Corvallis, Oregon 97333
k5 Department of Biochemistry and Molecular Medicine , UC Davis School of Medicine, and Institute for Pediatric Regenerative Medicine, Shriners Hospitals for Children-Northern California, Sacramento, CA 95817
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– name: k4 Computational Biology and Bioinformatics, Pacific Northwest National Laboratories , Richland, Washington 99352
– name: k6 Department of Pesticide Regulation , California Environmental Protection Agency, Sacramento, CA 95814
– name: k7 Department of Human Genetics , University of Utah, Salt Lake City, UT 84112
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Cites_doi 10.1016/j.mod.2004.08.006
10.1016/j.stem.2012.12.012
10.1016/j.plipres.2017.06.001
10.1007/s00204-017-2068-9
10.1007/s40572-014-0029-5
10.1046/j.1469-7580.2003.00143.x
10.1038/ncb2314
10.1007/978-1-4939-6346-1_10
10.1002/bdra.20216
10.1093/toxsci/68.2.403
10.1002/aja.1002030302
10.1101/gad.1249504
10.1038/nsmb.2000
10.1080/10408449891344263
10.1038/nprot.2009.97
10.1016/S0009-2797(02)00070-4
10.1007/s10552-009-9429-5
10.1016/j.marenvres.2004.03.001
10.1242/jcs.111997
10.1016/S0002-9440(10)64535-X
10.1093/toxsci/kfp189
10.1186/s13059-014-0550-8
10.1093/oxfordjournals.aje.a009451
10.1016/j.bcp.2008.11.021
10.1242/dev.125.13.2499
10.1002/1097-0177(2000)9999:9999<::AID-DVDY1054>3.3.CO;2-5
10.1016/j.taap.2011.09.020
10.1371/journal.pone.0111670
10.1016/j.toxrep.2017.04.005
10.1016/j.aquatox.2010.09.016
10.1016/j.taap.2013.05.006
10.1006/dbio.1996.0126
10.1126/scisignal.aal1910
10.1111/j.1469-7580.2012.01491.x
10.1093/toxsci/kfx035
10.1289/ehp.8230
10.1093/bioinformatics/btw313
10.12688/f1000research.7563.1
10.1016/j.bcp.2008.08.031
10.1074/jbc.M110.187534
10.1096/fj.08-109009
10.1002/gene.10095
10.1101/cshperspect.a007955
10.1042/BJ20050713
10.1371/journal.pbio.0040115
10.1016/j.chemosphere.2008.05.025
10.1371/journal.pone.0073169
10.1016/j.taap.2011.09.010
10.1093/bioinformatics/btu170
10.1242/dev.122.11.3487
10.1007/s00427-016-0533-8
10.1186/1471-2105-13-311
10.1016/j.taap.2013.04.024
10.1126/science.1176676
10.1093/humrep/dem300
10.1007/s11356-014-3627-8
10.1016/S0925-4773(02)00327-1
10.1016/j.matbio.2013.10.011
10.1093/toxsci/kfl011
10.1093/toxsci/kfq179
10.1093/carcin/9.7.1277
10.1016/j.envres.2013.12.002
10.1002/cpbi.5
10.1016/j.devcel.2014.09.018
10.1016/j.mcn.2006.03.005
10.1016/j.ydbio.2013.02.023
10.1093/toxsci/kfs253
10.1093/aje/kwr455
10.1093/toxsci/kfj118
10.1242/dev.123.1.95
10.1074/jbc.273.4.1839
10.1177/2211068211432197
10.1016/j.gde.2009.05.005
10.1093/toxsci/kfg202
10.1242/dev.022202
10.1016/j.envres.2015.03.017
10.12688/f1000research.7035.2
10.3389/fcell.2016.00045
10.1289/EHP3281
10.1038/nmeth.3252
10.1007/978-3-319-24277-4
10.1016/j.envint.2010.05.003
10.1093/bioinformatics/bti525
10.1016/j.neuro.2004.07.007
10.1089/wound.2013.0512
10.1038/nmeth.4197
10.1002/dvdy.21100
10.1542/peds.2008-3506
10.1146/annurev.cellbio.12.1.55
10.1038/ng.186
10.1101/gr.1239303
10.1124/mol.105.018044
10.1016/0045-6535(92)90482-7
10.1016/j.clim.2006.01.016
10.1093/toxsci/kfu245
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Issue 1
Keywords RNA sequencing
fluoranthene
benzo
appendage
benzo[k]fluoranthene
Language English
License This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model (https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model)
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Notes Michael A. Garland and Mitra C. Geier contributed equally to this study.
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References Park (2020071306124035800_kfaa063-B69) 2006; 119
Perera (2020071306124035800_kfaa063-B74) 1998; 147
(2020071306124035800_kfaa063-B77) 2017
Truong (2020071306124035800_kfaa063-B94) 2016; 1473
Genkinger (2020071306124035800_kfaa063-B25) 2015; 140
Arnold (2020071306124035800_kfaa063-B4) 2017
Ng (2020071306124035800_kfaa063-B62) 2010; 21
Yamamoto-Shiraishi (2020071306124035800_kfaa063-B101) 2013; 377
Giri (2020071306124035800_kfaa063-B28) 2000; 157
Knecht (2020071306124035800_kfaa063-B47) 2013; 271
Sauzeau (2020071306124035800_kfaa063-B81) 2011; 286
Tilton (2020071306124035800_kfaa063-B93) 2012; 13
Kee (2020071306124035800_kfaa063-B43) 2010; 117
Hikasa (2020071306124035800_kfaa063-B34) 2013; 5
Gu (2020071306124035800_kfaa063-B30) 2016; 32
Tanaka (2020071306124035800_kfaa063-B91) 2000; 219
Perera (2020071306124035800_kfaa063-B73) 2005; 26
Seijffers (2020071306124035800_kfaa063-B84) 2006; 32
Perera (2020071306124035800_kfaa063-B71) 2014; 9
Goodale (2020071306124035800_kfaa063-B29) 2013; 272
Gibson-Brown (2020071306124035800_kfaa063-B26) 1998; 125
Ma (2020071306124035800_kfaa063-B53) 2011; 18
Kimmel (2020071306124035800_kfaa063-B46) 1995; 203
Kim (2020071306124035800_kfaa063-B45) 2009; 112
Nebert (2020071306124035800_kfaa063-B61) 2017; 67
Perera (2020071306124035800_kfaa063-B72) 2009; 124
Mathew (2020071306124035800_kfaa063-B55) 2006; 69
Scott (2020071306124035800_kfaa063-B83) 2011; 101
Yamaji (2020071306124035800_kfaa063-B99) 2008; 40
Yano (2020071306124035800_kfaa063-B102) 2013; 222
Bobick (2020071306124035800_kfaa063-B9) 2012; 125
Love (2020071306124035800_kfaa063-B52) 2014; 15
Jayasundara (2020071306124035800_kfaa063-B39) 2015; 143
Giesy (2020071306124035800_kfaa063-B27) 1998; 28
Mikels (2020071306124035800_kfaa063-B57) 2006; 4
Bugel (2020071306124035800_kfaa063-B11) 2014; 1
Incardona (2020071306124035800_kfaa063-B38) 2011; 257
Wu (2020071306124035800_kfaa063-B98) 2017; 10
Alexa (2020071306124035800_kfaa063-B1) 2010; 2
Levin (2020071306124035800_kfaa063-B48) 2005; 122
Slowikowski (2020071306124035800_kfaa063-B87) 2017
Billiard (2020071306124035800_kfaa063-B8) 2006; 92
Sasagawa (2020071306124035800_kfaa063-B80) 2002; 33
Andreasen (2020071306124035800_kfaa063-B2) 2006; 92
Carney (2020071306124035800_kfaa063-B12) 2006; 76
Shannon (2020071306124035800_kfaa063-B85) 2003; 13
Andreasen (2020071306124035800_kfaa063-B3) 2002; 68
Coutts (2020071306124035800_kfaa063-B15) 2007; 22
Rundle (2020071306124035800_kfaa063-B79) 2012; 175
Simone (2020071306124035800_kfaa063-B86) 2014; 3
Karchner (2020071306124035800_kfaa063-B42) 2005; 392
Curado (2020071306124035800_kfaa063-B17) 2007; 236
Mullen (2020071306124035800_kfaa063-B60) 1996; 122
Osterwalder (2020071306124035800_kfaa063-B68) 2014; 31
Puga (2020071306124035800_kfaa063-B76) 2009; 77
Bolger (2020071306124035800_kfaa063-B10) 2014; 30
Mathew (2020071306124035800_kfaa063-B56) 2008; 22
Jung (2020071306124035800_kfaa063-B41) 2014; 128
Incardona (2020071306124035800_kfaa063-B37) 2005; 113
Wickham (2020071306124035800_kfaa063-B97) 2016
Kerkvliet (2020071306124035800_kfaa063-B44) 2009; 77
Suzuki (2020071306124035800_kfaa063-B90) 2010; 36
Prasch (2020071306124035800_kfaa063-B75) 2003; 76
Durinck (2020071306124035800_kfaa063-B19) 2009; 4
Yamaji (2020071306124035800_kfaa063-B100) 2013; 12
Gutkind (2020071306124035800_kfaa063-B31) 1998; 273
Ober (2020071306124035800_kfaa063-B65) 2003; 120
Lonai (2020071306124035800_kfaa063-B50) 2003; 202
Hahn (2020071306124035800_kfaa063-B32) 2002; 141
Galceran (2020071306124035800_kfaa063-B22) 2004; 18
Olson (2020071306124035800_kfaa063-B67) 1992; 25
Mulero-Navarro (2020071306124035800_kfaa063-B59) 2016; 4
Bikoff (2020071306124035800_kfaa063-B7) 2009; 19
Huber (2020071306124035800_kfaa063-B35) 2015; 12
Hwang (2020071306124035800_kfaa063-B36) 2008; 135
Chlebowski (2020071306124035800_kfaa063-B13) 2017; 157
Barron (2020071306124035800_kfaa063-B5) 2004; 58
Weyand (2020071306124035800_kfaa063-B96) 1988; 9
Mandrell (2020071306124035800_kfaa063-B54) 2012; 17
Jedrychowski (2020071306124035800_kfaa063-B40) 2015; 22
Niederreither (2020071306124035800_kfaa063-B63) 1996; 176
Stelzer (2020071306124035800_kfaa063-B89) 2016; 54
(2020071306124035800_kfaa063-B78) 2016
Durinck (2020071306124035800_kfaa063-B18) 2005; 21
Bengtsson (2020071306124035800_kfaa063-B6) 2017
Geier (2020071306124035800_kfaa063-B24) 2018; 92
Ten Berge (2020071306124035800_kfaa063-B92) 2011; 13
Soneson (2020071306124035800_kfaa063-B88) 2015; 4
Crowell (2020071306124035800_kfaa063-B16) 2011; 257
Hammerschmidt (2020071306124035800_kfaa063-B33) 1996; 123
Moreno-Layseca (2020071306124035800_kfaa063-B58) 2014; 34
Garcia (2020071306124035800_kfaa063-B23) 2018; 126
Oliveros (2020071306124035800_kfaa063-B66) 2016
Wahl (2020071306124035800_kfaa063-B95) 2008; 73
Patro (2020071306124035800_kfaa063-B70) 2017; 14
Lo (2020071306124035800_kfaa063-B49) 2012; 130
Fabian (2020071306124035800_kfaa063-B20) 2016; 226
Nurieva (2020071306124035800_kfaa063-B64) 2009; 325
Schmidt (2020071306124035800_kfaa063-B82) 1996; 12
Chlebowski (2020071306124035800_kfaa063-B14) 2017; 4
Forrest (2020071306124035800_kfaa063-B21) 2013; 8
Love (2020071306124035800_kfaa063-B51) 2016; 4
References_xml – year: 2017
  ident: 2020071306124035800_kfaa063-B6
  contributor:
    fullname: Bengtsson
– volume: 122
  start-page: 3
  year: 2005
  ident: 2020071306124035800_kfaa063-B48
  article-title: Left-right asymmetry in embryonic development: A comprehensive review
  publication-title: Mech. Dev
  doi: 10.1016/j.mod.2004.08.006
  contributor:
    fullname: Levin
– volume: 12
  start-page: 368
  year: 2013
  ident: 2020071306124035800_kfaa063-B100
  article-title: PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2012.12.012
  contributor:
    fullname: Yamaji
– volume: 67
  start-page: 38
  year: 2017
  ident: 2020071306124035800_kfaa063-B61
  article-title: Aryl hydrocarbon receptor (AHR): “Pioneer member” of the basic-helix/loop/helix per-Arnt-sim (bHLH/Pas) family of “sensors” of foreign and endogenous signals
  publication-title: Prog. Lipid Res
  doi: 10.1016/j.plipres.2017.06.001
  contributor:
    fullname: Nebert
– volume: 92
  start-page: 571
  year: 2018
  ident: 2020071306124035800_kfaa063-B24
  article-title: Comparative developmental toxicity of a comprehensive suite of polycyclic aromatic hydrocarbons
  publication-title: Arch. Toxicol
  doi: 10.1007/s00204-017-2068-9
  contributor:
    fullname: Geier
– volume: 1
  start-page: 341
  year: 2014
  ident: 2020071306124035800_kfaa063-B11
  article-title: Zebrafish: A marvel of high-throughput biology for 21(st) century toxicology
  publication-title: Curr. Environ. Health Rep
  doi: 10.1007/s40572-014-0029-5
  contributor:
    fullname: Bugel
– volume: 202
  start-page: 43
  year: 2003
  ident: 2020071306124035800_kfaa063-B50
  article-title: Epithelial mesenchymal interactions, the ECM and limb development
  publication-title: J. Anat
  doi: 10.1046/j.1469-7580.2003.00143.x
  contributor:
    fullname: Lonai
– volume: 2
  start-page: 2010
  year: 2010
  ident: 2020071306124035800_kfaa063-B1
  article-title: topGO: Enrichment analysis for gene ontology
  publication-title: R Package Version
  contributor:
    fullname: Alexa
– volume: 13
  start-page: 1070
  year: 2011
  ident: 2020071306124035800_kfaa063-B92
  article-title: Embryonic stem cells require Wnt proteins to prevent differentiation to epiblast stem cells
  publication-title: Nat. Cell Biol
  doi: 10.1038/ncb2314
  contributor:
    fullname: Ten Berge
– volume: 1473
  start-page: 89
  year: 2016
  ident: 2020071306124035800_kfaa063-B94
  article-title: Better, faster, cheaper: Getting the most out of high-throughput screening with zebrafish
  publication-title: Methods Mol. Biol
  doi: 10.1007/978-1-4939-6346-1_10
  contributor:
    fullname: Truong
– volume: 76
  start-page: 7
  year: 2006
  ident: 2020071306124035800_kfaa063-B12
  article-title: Understanding dioxin developmental toxicity using the zebrafish model
  publication-title: Birth Defects Res. A Clin. Mol. Teratol
  doi: 10.1002/bdra.20216
  contributor:
    fullname: Carney
– volume: 68
  start-page: 403
  year: 2002
  ident: 2020071306124035800_kfaa063-B3
  article-title: Tissue-specific expression of AHR2, ARNT2, and CYP1A in zebrafish embryos and larvae: Effects of developmental stage and 2,3,7,8-tetrachlorodibenzo-p-dioxin exposure
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/68.2.403
  contributor:
    fullname: Andreasen
– volume: 203
  start-page: 253
  year: 1995
  ident: 2020071306124035800_kfaa063-B46
  article-title: Stages of embryonic development of the zebrafish
  publication-title: Dev. Dyn
  doi: 10.1002/aja.1002030302
  contributor:
    fullname: Kimmel
– volume: 18
  start-page: 2718
  year: 2004
  ident: 2020071306124035800_kfaa063-B22
  article-title: LEF1-mediated regulation of delta-like1 links Wnt and notch signaling in somitogenesis
  publication-title: Genes Dev
  doi: 10.1101/gad.1249504
  contributor:
    fullname: Galceran
– volume: 18
  start-page: 120
  year: 2011
  ident: 2020071306124035800_kfaa063-B53
  article-title: Sequence-specific regulator PRDM14 safeguards mouse ESCs from entering extraembryonic endoderm fates
  publication-title: Nat. Struct. Mol. Biol
  doi: 10.1038/nsmb.2000
  contributor:
    fullname: Ma
– volume: 28
  start-page: 511
  year: 1998
  ident: 2020071306124035800_kfaa063-B27
  article-title: Dioxin-like and non-dioxin-like toxic effects of polychlorinated biphenyls (PCBs): Implications for risk assessment
  publication-title: Crit. Rev. Toxicol
  doi: 10.1080/10408449891344263
  contributor:
    fullname: Giesy
– year: 2017
  ident: 2020071306124035800_kfaa063-B77
– volume: 4
  start-page: 1184
  year: 2009
  ident: 2020071306124035800_kfaa063-B19
  article-title: Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
  publication-title: Nat. Protoc
  doi: 10.1038/nprot.2009.97
  contributor:
    fullname: Durinck
– volume: 141
  start-page: 131
  year: 2002
  ident: 2020071306124035800_kfaa063-B32
  article-title: Aryl hydrocarbon receptors: Diversity and evolution
  publication-title: Chem. Biol. Interact
  doi: 10.1016/S0009-2797(02)00070-4
  contributor:
    fullname: Hahn
– volume: 21
  start-page: 11
  year: 2010
  ident: 2020071306124035800_kfaa063-B62
  article-title: Interaction between organochlorines and the AHR gene, and risk of non-Hodgkin lymphoma
  publication-title: Cancer Cause Control
  doi: 10.1007/s10552-009-9429-5
  contributor:
    fullname: Ng
– volume: 58
  start-page: 95
  year: 2004
  ident: 2020071306124035800_kfaa063-B5
  article-title: Relative potency of PAHs and heterocycles as aryl hydrocarbon receptor agonists in fish
  publication-title: Mar. Environ. Res
  doi: 10.1016/j.marenvres.2004.03.001
  contributor:
    fullname: Barron
– volume: 125
  start-page: 6071
  year: 2012
  ident: 2020071306124035800_kfaa063-B9
  article-title: Shox2 regulates progression through chondrogenesis in the mouse proximal limb
  publication-title: J. Cell Sci
  doi: 10.1242/jcs.111997
  contributor:
    fullname: Bobick
– volume-title: RStudio: Integrated Development for R
  year: 2016
  ident: 2020071306124035800_kfaa063-B78
– volume: 157
  start-page: 249
  year: 2000
  ident: 2020071306124035800_kfaa063-B28
  article-title: Interleukin-1 alpha is a paracrine inducer of FGF7, a key epithelial growth factor in benign prostatic hyperplasia
  publication-title: Am. J. Pathol
  doi: 10.1016/S0002-9440(10)64535-X
  contributor:
    fullname: Giri
– volume: 112
  start-page: 229
  year: 2009
  ident: 2020071306124035800_kfaa063-B45
  article-title: Comparative analysis of AHR-mediated TCDD-elicited gene expression in human liver adult stem cells
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfp189
  contributor:
    fullname: Kim
– volume: 15
  start-page: 550
  year: 2014
  ident: 2020071306124035800_kfaa063-B52
  article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
  publication-title: Genome Biol
  doi: 10.1186/s13059-014-0550-8
  contributor:
    fullname: Love
– volume: 147
  start-page: 309
  year: 1998
  ident: 2020071306124035800_kfaa063-B74
  article-title: Recent developments in molecular epidemiology: A study of the effects of environmental polycyclic aromatic hydrocarbons on birth outcomes in Poland
  publication-title: Am. J. Epidemiol
  doi: 10.1093/oxfordjournals.aje.a009451
  contributor:
    fullname: Perera
– volume: 77
  start-page: 746
  year: 2009
  ident: 2020071306124035800_kfaa063-B44
  article-title: AHR-mediated immunomodulation: The role of altered gene transcription
  publication-title: Biochem. Pharmacol
  doi: 10.1016/j.bcp.2008.11.021
  contributor:
    fullname: Kerkvliet
– volume: 125
  start-page: 2499
  year: 1998
  ident: 2020071306124035800_kfaa063-B26
  article-title: Involvement of T-box genes Tbx2-Tbx5 in vertebrate limb specification and development
  publication-title: Development
  doi: 10.1242/dev.125.13.2499
  contributor:
    fullname: Gibson-Brown
– volume: 219
  start-page: 248
  year: 2000
  ident: 2020071306124035800_kfaa063-B91
  article-title: Nkx3.1, a murine homolog of drosophila bagpipe, regulates epithelial ductal branching and proliferation of the prostate and palatine glands
  publication-title: Dev. Dyn
  doi: 10.1002/1097-0177(2000)9999:9999<::AID-DVDY1054>3.3.CO;2-5
  contributor:
    fullname: Tanaka
– volume: 257
  start-page: 365
  year: 2011
  ident: 2020071306124035800_kfaa063-B16
  article-title: Preliminary physiologically based pharmacokinetic models for benzo[a]pyrene and dibenzo[def,p]chrysene in rodents
  publication-title: Toxicol. Appl. Pharmacol
  doi: 10.1016/j.taap.2011.09.020
  contributor:
    fullname: Crowell
– volume: 9
  start-page: e111670
  year: 2014
  ident: 2020071306124035800_kfaa063-B71
  article-title: Early-life exposure to polycyclic aromatic hydrocarbons and ADHD behavior problems
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0111670
  contributor:
    fullname: Perera
– volume: 4
  start-page: 202
  year: 2017
  ident: 2020071306124035800_kfaa063-B14
  article-title: Investigating the application of a nitroreductase-expressing transgenic zebrafish line for high-throughput toxicity testing
  publication-title: Toxicol. Rep
  doi: 10.1016/j.toxrep.2017.04.005
  contributor:
    fullname: Chlebowski
– volume: 101
  start-page: 165
  year: 2011
  ident: 2020071306124035800_kfaa063-B83
  article-title: AhR2-mediated, CYP1A-independent cardiovascular toxicity in zebrafish (Danio rerio) embryos exposed to retene
  publication-title: Aquat. Toxicol
  doi: 10.1016/j.aquatox.2010.09.016
  contributor:
    fullname: Scott
– year: 2017
  ident: 2020071306124035800_kfaa063-B4
  contributor:
    fullname: Arnold
– volume: 271
  start-page: 266
  year: 2013
  ident: 2020071306124035800_kfaa063-B47
  article-title: Comparative developmental toxicity of environmentally relevant oxygenated PAHs
  publication-title: Toxicol. Appl. Pharmacol
  doi: 10.1016/j.taap.2013.05.006
  contributor:
    fullname: Knecht
– volume: 176
  start-page: 185
  year: 1996
  ident: 2020071306124035800_kfaa063-B63
  article-title: Morphological and molecular characterization of retinoic acid-induced limb duplications in mice
  publication-title: Dev. Biol
  doi: 10.1006/dbio.1996.0126
  contributor:
    fullname: Niederreither
– volume: 10
  start-page: eaal1910
  year: 2017
  ident: 2020071306124035800_kfaa063-B98
  article-title: BMP8A sustains spermatogenesis by activating both Smad1/5/8 and Smad2/3 in spermatogonia
  publication-title: Sci. Signal.
  doi: 10.1126/scisignal.aal1910
  contributor:
    fullname: Wu
– volume: 222
  start-page: 100
  year: 2013
  ident: 2020071306124035800_kfaa063-B102
  article-title: The making of differences between fins and limbs
  publication-title: J. Anat
  doi: 10.1111/j.1469-7580.2012.01491.x
  contributor:
    fullname: Yano
– volume: 157
  start-page: 246
  year: 2017
  ident: 2020071306124035800_kfaa063-B13
  article-title: Mechanistic investigations into the developmental toxicity of nitrated and heterocyclic PAHs
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfx035
  contributor:
    fullname: Chlebowski
– volume: 113
  start-page: 1755
  year: 2005
  ident: 2020071306124035800_kfaa063-B37
  article-title: Aryl hydrocarbon receptor-independent toxicity of weathered crude oil during fish development
  publication-title: Environ. Health Perspect
  doi: 10.1289/ehp.8230
  contributor:
    fullname: Incardona
– volume: 32
  start-page: 2847
  year: 2016
  ident: 2020071306124035800_kfaa063-B30
  article-title: Complex heatmaps reveal patterns and correlations in multidimensional genomic data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btw313
  contributor:
    fullname: Gu
– volume: 4
  start-page: 1521
  year: 2015
  ident: 2020071306124035800_kfaa063-B88
  article-title: Differential analyses for RNA-seq: Transcript-level estimates improve gene-level inferences
  publication-title: F1000Res
  doi: 10.12688/f1000research.7563.1
  contributor:
    fullname: Soneson
– volume: 77
  start-page: 713
  year: 2009
  ident: 2020071306124035800_kfaa063-B76
  article-title: The aryl hydrocarbon receptor cross-talks with multiple signal transduction pathways
  publication-title: Biochem. Pharmacol
  doi: 10.1016/j.bcp.2008.08.031
  contributor:
    fullname: Puga
– volume: 286
  start-page: 2896
  year: 2011
  ident: 2020071306124035800_kfaa063-B81
  article-title: Transcriptional factor aryl hydrocarbon receptor (AHR) controls cardiovascular and respiratory functions by regulating the expression of the Vav3 proto-oncogene
  publication-title: J. Biol. Chem
  doi: 10.1074/jbc.M110.187534
  contributor:
    fullname: Sauzeau
– year: 2017
  ident: 2020071306124035800_kfaa063-B87
  contributor:
    fullname: Slowikowski
– volume: 22
  start-page: 3087
  year: 2008
  ident: 2020071306124035800_kfaa063-B56
  article-title: Crosstalk between AHR and Wnt signaling through R-Spondin1 impairs tissue regeneration in zebrafish
  publication-title: FASEB J
  doi: 10.1096/fj.08-109009
  contributor:
    fullname: Mathew
– volume: 33
  start-page: 86
  year: 2002
  ident: 2020071306124035800_kfaa063-B80
  article-title: Axes establishment during eye morphogenesis in Xenopus by coordinate and antagonistic actions of BMP4, Shh, and RA
  publication-title: Genesis
  doi: 10.1002/gene.10095
  contributor:
    fullname: Sasagawa
– volume: 5
  start-page: a007955
  year: 2013
  ident: 2020071306124035800_kfaa063-B34
  article-title: Wnt signaling in vertebrate axis specification
  publication-title: Cold Spring Harb. Perspect. Biol.
  doi: 10.1101/cshperspect.a007955
  contributor:
    fullname: Hikasa
– volume: 392
  start-page: 153
  year: 2005
  ident: 2020071306124035800_kfaa063-B42
  article-title: AHR1B, a new functional aryl hydrocarbon receptor in zebrafish: tandem arrangement of ahr1b and ahr2 genes
  publication-title: Biochem. J.
  doi: 10.1042/BJ20050713
  contributor:
    fullname: Karchner
– volume: 4
  start-page: e115
  year: 2006
  ident: 2020071306124035800_kfaa063-B57
  article-title: Purified Wnt5a protein activates or inhibits beta-catenin-TCF signaling depending on receptor context
  publication-title: PLoS Biol
  doi: 10.1371/journal.pbio.0040115
  contributor:
    fullname: Mikels
– volume: 73
  start-page: 209
  year: 2008
  ident: 2020071306124035800_kfaa063-B95
  article-title: A technical mixture of 2,2′,4,4′-tetrabromo diphenyl ether (BDE47) and brominated furans triggers aryl hydrocarbon receptor (AHR) mediated gene expression and toxicity
  publication-title: Chemosphere
  doi: 10.1016/j.chemosphere.2008.05.025
  contributor:
    fullname: Wahl
– volume: 8
  start-page: e73169
  year: 2013
  ident: 2020071306124035800_kfaa063-B21
  article-title: Knockdown of human TCF4 affects multiple signaling pathways involved in cell survival, epithelial to mesenchymal transition and neuronal differentiation
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0073169
  contributor:
    fullname: Forrest
– volume: 257
  start-page: 242
  year: 2011
  ident: 2020071306124035800_kfaa063-B38
  article-title: Cardiac toxicity of 5-ring polycyclic aromatic hydrocarbons is differentially dependent on the aryl hydrocarbon receptor 2 isoform during zebrafish development
  publication-title: Toxicol. Appl. Pharmacol
  doi: 10.1016/j.taap.2011.09.010
  contributor:
    fullname: Incardona
– year: 2016
  ident: 2020071306124035800_kfaa063-B66
  contributor:
    fullname: Oliveros
– volume: 30
  start-page: 2114
  year: 2014
  ident: 2020071306124035800_kfaa063-B10
  article-title: Trimmomatic: A flexible trimmer for Illumina sequence data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu170
  contributor:
    fullname: Bolger
– volume: 122
  start-page: 3487
  year: 1996
  ident: 2020071306124035800_kfaa063-B60
  article-title: Nerve dependency of regeneration: The role of Distal-less and FGF signaling in amphibian limb regeneration
  publication-title: Development
  doi: 10.1242/dev.122.11.3487
  contributor:
    fullname: Mullen
– volume: 226
  start-page: 99
  year: 2016
  ident: 2020071306124035800_kfaa063-B20
  article-title: Vox homeobox gene: A novel regulator of midbrain-hindbrain boundary development in medaka fish?
  publication-title: Dev. Genes Evol
  doi: 10.1007/s00427-016-0533-8
  contributor:
    fullname: Fabian
– volume: 13
  start-page: 311
  year: 2012
  ident: 2020071306124035800_kfaa063-B93
  article-title: Bioinformatics resource manager v2.3: An integrated software environment for systems biology with microRNA and cross-species analysis tools
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-13-311
  contributor:
    fullname: Tilton
– volume: 272
  start-page: 656
  year: 2013
  ident: 2020071306124035800_kfaa063-B29
  article-title: Structurally distinct polycyclic aromatic hydrocarbons induce differential transcriptional responses in developing zebrafish
  publication-title: Toxicol. Appl. Pharmacol
  doi: 10.1016/j.taap.2013.04.024
  contributor:
    fullname: Goodale
– volume: 325
  start-page: 1001
  year: 2009
  ident: 2020071306124035800_kfaa063-B64
  article-title: Bcl6 mediates the development of T follicular helper cells
  publication-title: Science
  doi: 10.1126/science.1176676
  contributor:
    fullname: Nurieva
– volume: 22
  start-page: 2912
  year: 2007
  ident: 2020071306124035800_kfaa063-B15
  article-title: Environmental toxicant-induced germ cell apoptosis in the human fetal testis
  publication-title: Hum. Reprod
  doi: 10.1093/humrep/dem300
  contributor:
    fullname: Coutts
– volume: 22
  start-page: 3631
  year: 2015
  ident: 2020071306124035800_kfaa063-B40
  article-title: Prenatal exposure to polycyclic aromatic hydrocarbons and cognitive dysfunction in children
  publication-title: Environ. Sci. Pollut. Res. Int
  doi: 10.1007/s11356-014-3627-8
  contributor:
    fullname: Jedrychowski
– volume: 120
  start-page: 5
  year: 2003
  ident: 2020071306124035800_kfaa063-B65
  article-title: From endoderm formation to liver and pancreas development in zebrafish
  publication-title: Mech. Dev
  doi: 10.1016/S0925-4773(02)00327-1
  contributor:
    fullname: Ober
– volume: 34
  start-page: 144
  year: 2014
  ident: 2020071306124035800_kfaa063-B58
  article-title: Signalling pathways linking integrins with cell cycle progression
  publication-title: Matrix Biol
  doi: 10.1016/j.matbio.2013.10.011
  contributor:
    fullname: Moreno-Layseca
– volume: 92
  start-page: 526
  year: 2006
  ident: 2020071306124035800_kfaa063-B8
  article-title: The role of the aryl hydrocarbon receptor pathway in mediating synergistic developmental toxicity of polycyclic aromatic hydrocarbons to zebrafish
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfl011
  contributor:
    fullname: Billiard
– volume: 117
  start-page: 218
  year: 2010
  ident: 2020071306124035800_kfaa063-B43
  article-title: Human primordial germ cell formation is diminished by exposure to environmental toxicants acting through the AHR signaling pathway
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfq179
  contributor:
    fullname: Kee
– volume: 9
  start-page: 1277
  year: 1988
  ident: 2020071306124035800_kfaa063-B96
  article-title: Metabolism and mutagenic activity of benzo[k]fluoranthene and 3-flurobenzo[k]fluoranthene, 8-flurobenzo[k]fluoranthene and 9-fluorobenzo[k]fluoranthene
  publication-title: Carcinogenesis
  doi: 10.1093/carcin/9.7.1277
  contributor:
    fullname: Weyand
– volume: 128
  start-page: 35
  year: 2014
  ident: 2020071306124035800_kfaa063-B41
  article-title: Polycyclic aromatic hydrocarbon exposure, obesity and childhood asthma in an urban cohort
  publication-title: Environ. Res
  doi: 10.1016/j.envres.2013.12.002
  contributor:
    fullname: Jung
– volume: 54
  year: 2016
  ident: 2020071306124035800_kfaa063-B89
  article-title: The GeneCards suite: From gene data mining to disease genome sequence analyses
  publication-title: Curr. Protoc. Bioinform
  doi: 10.1002/cpbi.5
  contributor:
    fullname: Stelzer
– volume: 31
  start-page: 345
  year: 2014
  ident: 2020071306124035800_kfaa063-B68
  article-title: HAND2 targets define a network of transcriptional regulators that compartmentalize the early limb bud mesenchyme
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2014.09.018
  contributor:
    fullname: Osterwalder
– volume: 32
  start-page: 143
  year: 2006
  ident: 2020071306124035800_kfaa063-B84
  article-title: The transcription factor ATF-3 promotes neurite outgrowth
  publication-title: Mol. Cell. Neurosci
  doi: 10.1016/j.mcn.2006.03.005
  contributor:
    fullname: Seijffers
– volume: 377
  start-page: 363
  year: 2013
  ident: 2020071306124035800_kfaa063-B101
  article-title: Wnt and BMP signaling cooperate with Hox in the control of Six2 expression in limb tendon precursor
  publication-title: Dev. Biol
  doi: 10.1016/j.ydbio.2013.02.023
  contributor:
    fullname: Yamamoto-Shiraishi
– volume: 130
  start-page: 349
  year: 2012
  ident: 2020071306124035800_kfaa063-B49
  article-title: High-resolution genome-wide mapping of AHR and ARNT binding sites by ChIP-Seq
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfs253
  contributor:
    fullname: Lo
– volume: 175
  start-page: 1163
  year: 2012
  ident: 2020071306124035800_kfaa063-B79
  article-title: Association of childhood obesity with maternal exposure to ambient air polycyclic aromatic hydrocarbons during pregnancy
  publication-title: Am. J. Epidemiol
  doi: 10.1093/aje/kwr455
  contributor:
    fullname: Rundle
– volume: 92
  start-page: 254
  year: 2006
  ident: 2020071306124035800_kfaa063-B2
  article-title: Regenerative growth is impacted by TCDD: Gene expression analysis reveals extracellular matrix modulation
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfj118
  contributor:
    fullname: Andreasen
– volume: 123
  start-page: 95
  year: 1996
  ident: 2020071306124035800_kfaa063-B33
  article-title: Dino and mercedes, two genes regulating dorsal development in the zebrafish embryo
  publication-title: Development
  doi: 10.1242/dev.123.1.95
  contributor:
    fullname: Hammerschmidt
– volume: 273
  start-page: 1839
  year: 1998
  ident: 2020071306124035800_kfaa063-B31
  article-title: The pathways connecting G protein-coupled receptors to the nucleus through divergent mitogen-activated protein kinase cascades
  publication-title: J. Biol. Chem
  doi: 10.1074/jbc.273.4.1839
  contributor:
    fullname: Gutkind
– volume: 17
  start-page: 66
  year: 2012
  ident: 2020071306124035800_kfaa063-B54
  article-title: Automated zebrafish chorion removal and single embryo placement: Optimizing throughput of zebrafish developmental toxicity screens
  publication-title: J. Lab. Autom
  doi: 10.1177/2211068211432197
  contributor:
    fullname: Mandrell
– volume: 19
  start-page: 379
  year: 2009
  ident: 2020071306124035800_kfaa063-B7
  article-title: An expanding job description for Blimp-1/PRDM1
  publication-title: Curr. Opin. Genet. Dev
  doi: 10.1016/j.gde.2009.05.005
  contributor:
    fullname: Bikoff
– volume: 76
  start-page: 138
  year: 2003
  ident: 2020071306124035800_kfaa063-B75
  article-title: Aryl hydrocarbon receptor 2 mediates 2,3,7,8-tetrachlorodibenzo-p-dioxin developmental toxicity in zebrafish
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfg202
  contributor:
    fullname: Prasch
– volume: 135
  start-page: 3149
  year: 2008
  ident: 2020071306124035800_kfaa063-B36
  article-title: DLX3 is a crucial regulator of hair follicle differentiation and cycling
  publication-title: Development
  doi: 10.1242/dev.022202
  contributor:
    fullname: Hwang
– volume: 140
  start-page: 136
  year: 2015
  ident: 2020071306124035800_kfaa063-B25
  article-title: Prenatal polycyclic aromatic hydrocarbon (PAH) exposure, antioxidant levels and behavioral development of children ages 6–9
  publication-title: Environ. Res
  doi: 10.1016/j.envres.2015.03.017
  contributor:
    fullname: Genkinger
– volume: 4
  start-page: 1070
  year: 2016
  ident: 2020071306124035800_kfaa063-B51
  article-title: RNA-seq workflow: Gene-level exploratory analysis and differential expression [version 2; referees: 2 approved]
  publication-title: F1000Res
  doi: 10.12688/f1000research.7035.2
  contributor:
    fullname: Love
– volume: 4
  start-page: 45
  year: 2016
  ident: 2020071306124035800_kfaa063-B59
  article-title: New trends in aryl hydrocarbon receptor biology
  publication-title: Front. Cell Dev. Biol
  doi: 10.3389/fcell.2016.00045
  contributor:
    fullname: Mulero-Navarro
– volume: 126
  start-page: 117002
  year: 2018
  ident: 2020071306124035800_kfaa063-B23
  article-title: Signaling events downstream of AHR activation that contribute to toxic responses: The functional role of an AHR-dependent long noncoding RNA (slincR) using the zebrafish model
  publication-title: Environ. Health Perspect
  doi: 10.1289/EHP3281
  contributor:
    fullname: Garcia
– volume: 12
  start-page: 115
  year: 2015
  ident: 2020071306124035800_kfaa063-B35
  article-title: Orchestrating high-throughput genomic analysis with bioconductor
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.3252
  contributor:
    fullname: Huber
– volume-title: ggplot2: Elegant Graphics for Data Analysis
  year: 2016
  ident: 2020071306124035800_kfaa063-B97
  doi: 10.1007/978-3-319-24277-4
  contributor:
    fullname: Wickham
– volume: 36
  start-page: 699
  year: 2010
  ident: 2020071306124035800_kfaa063-B90
  article-title: Prenatal exposure to phthalate esters and PAHs and birth outcomes
  publication-title: Environ. Int
  doi: 10.1016/j.envint.2010.05.003
  contributor:
    fullname: Suzuki
– volume: 21
  start-page: 3439
  year: 2005
  ident: 2020071306124035800_kfaa063-B18
  article-title: BioMart and Bioconductor: A powerful link between biological databases and microarray data analysis
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bti525
  contributor:
    fullname: Durinck
– volume: 26
  start-page: 573
  year: 2005
  ident: 2020071306124035800_kfaa063-B73
  article-title: A summary of recent findings on birth outcomes and developmental effects of prenatal ETS, PAH, and pesticide exposures
  publication-title: Neurotoxicology
  doi: 10.1016/j.neuro.2004.07.007
  contributor:
    fullname: Perera
– volume: 3
  start-page: 281
  year: 2014
  ident: 2020071306124035800_kfaa063-B86
  article-title: SERPINE1: A molecular switch in the proliferation-migration dichotomy in wound-“activated” keratinocytes
  publication-title: Adv. Wound Care
  doi: 10.1089/wound.2013.0512
  contributor:
    fullname: Simone
– volume: 14
  start-page: 417
  year: 2017
  ident: 2020071306124035800_kfaa063-B70
  article-title: Salmon provides fast and bias-aware quantification of transcript expression
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4197
  contributor:
    fullname: Patro
– volume: 236
  start-page: 1025
  year: 2007
  ident: 2020071306124035800_kfaa063-B17
  article-title: Conditional targeted cell ablation in zebrafish: A new tool for regeneration studies
  publication-title: Dev. Dyn
  doi: 10.1002/dvdy.21100
  contributor:
    fullname: Curado
– volume: 124
  start-page: e195
  year: 2009
  ident: 2020071306124035800_kfaa063-B72
  article-title: Prenatal airborne polycyclic aromatic hydrocarbon exposure and child IQ at age 5 years
  publication-title: Pediatrics
  doi: 10.1542/peds.2008-3506
  contributor:
    fullname: Perera
– volume: 12
  start-page: 55
  year: 1996
  ident: 2020071306124035800_kfaa063-B82
  article-title: AH receptor signaling pathways
  publication-title: Annu. Rev. Cell Dev. Biol
  doi: 10.1146/annurev.cellbio.12.1.55
  contributor:
    fullname: Schmidt
– volume: 40
  start-page: 1016
  year: 2008
  ident: 2020071306124035800_kfaa063-B99
  article-title: Critical function of PRDM14 for the establishment of the germ cell lineage in mice
  publication-title: Nat. Genet
  doi: 10.1038/ng.186
  contributor:
    fullname: Yamaji
– volume: 13
  start-page: 2498
  year: 2003
  ident: 2020071306124035800_kfaa063-B85
  article-title: Cytoscape: A software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Res
  doi: 10.1101/gr.1239303
  contributor:
    fullname: Shannon
– volume: 69
  start-page: 257
  year: 2006
  ident: 2020071306124035800_kfaa063-B55
  article-title: Aryl hydrocarbon receptor activation inhibits regenerative growth
  publication-title: Mol. Pharmacol
  doi: 10.1124/mol.105.018044
  contributor:
    fullname: Mathew
– volume: 25
  start-page: 71
  year: 1992
  ident: 2020071306124035800_kfaa063-B67
  article-title: Comparative developmental toxicity of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)
  publication-title: Chemosphere
  doi: 10.1016/0045-6535(92)90482-7
  contributor:
    fullname: Olson
– volume: 119
  start-page: 229
  year: 2006
  ident: 2020071306124035800_kfaa063-B69
  article-title: Prostaglandin E-2 synthesis and secretion: The role of PGE(2) synthases
  publication-title: Clin. Immunol
  doi: 10.1016/j.clim.2006.01.016
  contributor:
    fullname: Park
– volume: 143
  start-page: 469
  year: 2015
  ident: 2020071306124035800_kfaa063-B39
  article-title: AHR2-mediated transcriptomic responses underlying the synergistic cardiac developmental toxicity of PAHs
  publication-title: Toxicol. Sci
  doi: 10.1093/toxsci/kfu245
  contributor:
    fullname: Jayasundara
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Snippet Abstract The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using...
The aryl hydrocarbon receptor (AHR) mediates developmental toxicity of several xenobiotic classes including polycyclic aromatic hydrocarbons. Using embryonic...
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StartPage 46
SubjectTerms Animals
Developmental and Reproductive Toxicology
Embryo, Nonmammalian
Fluorenes - toxicity
Larva
Polycyclic Aromatic Hydrocarbons - toxicity
Receptors, Aryl Hydrocarbon - metabolism
Water Pollutants, Chemical - toxicity
Zebrafish
Zebrafish Proteins - metabolism
Title Aryl Hydrocarbon Receptor Mediates Larval Zebrafish Fin Duplication Following Exposure to Benzofluoranthenes
URI https://www.ncbi.nlm.nih.gov/pubmed/32384158
https://pubmed.ncbi.nlm.nih.gov/PMC7357178
Volume 176
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