Removing striping artifacts in light-sheet fluorescence microscopy: a review
In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular structures to whole animals, both in-vivo and ex-vivo, owing to its many advantages relative to point-scanning methods. By providing the sele...
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| Published in | Progress in biophysics and molecular biology Vol. 168; pp. 52 - 65 |
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| Main Authors | , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Elsevier Ltd
01.01.2022
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| Online Access | Get full text |
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| Abstract | In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular structures to whole animals, both in-vivo and ex-vivo, owing to its many advantages relative to point-scanning methods. By providing the selective illumination of sample single planes, LSFM achieves an intrinsic optical sectioning and direct 2D image acquisition, with low out-of-focus fluorescence background, sample photo-damage and photo-bleaching. On the other hand, such an illumination scheme is prone to light absorption or scattering effects, which lead to uneven illumination and striping artifacts in the images, oriented along the light sheet propagation direction. Several methods have been developed to address this issue, ranging from fully optical solutions to entirely digital post-processing approaches. In this work, we present them, outlining their advantages, performance and limitations. |
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| AbstractList | In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular structures to whole animals, both in-vivo and ex-vivo, owing to its many advantages relative to point-scanning methods. By providing the selective illumination of sample single planes, LSFM achieves an intrinsic optical sectioning and direct 2D image acquisition, with low out-of-focus fluorescence background, sample photo-damage and photo-bleaching. On the other hand, such an illumination scheme is prone to light absorption or scattering effects, which lead to uneven illumination and striping artifacts in the images, oriented along the light sheet propagation direction. Several methods have been developed to address this issue, ranging from fully optical solutions to entirely digital post-processing approaches. In this work, we present them, outlining their advantages, performance and limitations. In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular structures to whole animals, both in-vivo and ex-vivo, owing to its many advantages relative to point-scanning methods. By providing the selective illumination of sample single planes, LSFM achieves an intrinsic optical sectioning and direct 2D image acquisition, with low out-of-focus fluorescence background, sample photo-damage and photo-bleaching. On the other hand, such an illumination scheme is prone to light absorption or scattering effects, which lead to uneven illumination and striping artifacts in the images, oriented along the light sheet propagation direction. Several methods have been developed to address this issue, ranging from fully optical solutions to entirely digital post-processing approaches. In this work, we present them, outlining their advantages, performance and limitations.In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular structures to whole animals, both in-vivo and ex-vivo, owing to its many advantages relative to point-scanning methods. By providing the selective illumination of sample single planes, LSFM achieves an intrinsic optical sectioning and direct 2D image acquisition, with low out-of-focus fluorescence background, sample photo-damage and photo-bleaching. On the other hand, such an illumination scheme is prone to light absorption or scattering effects, which lead to uneven illumination and striping artifacts in the images, oriented along the light sheet propagation direction. Several methods have been developed to address this issue, ranging from fully optical solutions to entirely digital post-processing approaches. In this work, we present them, outlining their advantages, performance and limitations. |
| Author | Sancataldo, Giuseppe Gavryusev, Vladislav Müllenbroich, Caroline de Vito, Giuseppe Turrini, Lapo Pavone, Francesco Saverio Ricci, Pietro Silvestri, Ludovico |
| Author_xml | – sequence: 1 givenname: Pietro orcidid: 0000-0002-6931-9234 surname: Ricci fullname: Ricci, Pietro organization: European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, 50019, Italy – sequence: 2 givenname: Vladislav orcidid: 0000-0001-7734-7828 surname: Gavryusev fullname: Gavryusev, Vladislav organization: European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, 50019, Italy – sequence: 3 givenname: Caroline orcidid: 0000-0003-0113-8573 surname: Müllenbroich fullname: Müllenbroich, Caroline organization: School of Physics and Astronomy, University of Glasgow, G12 8QQ, Glasgow, UK – sequence: 4 givenname: Lapo orcidid: 0000-0003-2519-7893 surname: Turrini fullname: Turrini, Lapo organization: European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, 50019, Italy – sequence: 5 givenname: Giuseppe orcidid: 0000-0001-8225-5944 surname: de Vito fullname: de Vito, Giuseppe organization: European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, 50019, Italy – sequence: 6 givenname: Ludovico surname: Silvestri fullname: Silvestri, Ludovico organization: European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, 50019, Italy – sequence: 7 givenname: Giuseppe surname: Sancataldo fullname: Sancataldo, Giuseppe email: giuseppe.sancataldo@unipa.it organization: University of Palermo, Department of Physics and Chemistry, Palermo, 90128, Italy – sequence: 8 givenname: Francesco Saverio surname: Pavone fullname: Pavone, Francesco Saverio email: pavone@lens.unifi.it organization: European Laboratory for Non-Linear Spectroscopy, Sesto Fiorentino, 50019, Italy |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/34274370$$D View this record in MEDLINE/PubMed |
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| Keywords | Striping Brain imaging 3D microscopy Light-sheet microscopy |
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| Snippet | In recent years, light-sheet fluorescence microscopy (LSFM) has found a broad application for imaging of diverse biological samples, ranging from sub-cellular... |
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| Title | Removing striping artifacts in light-sheet fluorescence microscopy: a review |
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