Image-Based 2D Re-Projection for Attenuation Substitution in PET Neuroimaging
Purpose In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2...
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Published in | Molecular imaging and biology Vol. 20; no. 5; pp. 826 - 834 |
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Main Authors | , , , , , , |
Format | Journal Article |
Language | English |
Published |
Cham
Springer International Publishing
01.10.2018
Springer Nature B.V |
Subjects | |
Online Access | Get full text |
ISSN | 1536-1632 1860-2002 1860-2002 |
DOI | 10.1007/s11307-018-1171-5 |
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Abstract | Purpose
In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2D projection method that allows offline
image-based
reprocessing.
Procedure
2-Deoxy-2-[
18
F]fluoro-
d
-glucose ([
18
F]FDG) brain scans were acquired (Siemens HR+) for six subjects. Attenuation data were obtained using the scanner’s transmission source (SAC). Additional scanning was performed on a Siemens mMR including production of a Dixon-based MR AC (MRAC). The MRAC was imported to the HR+ and the PET data were reconstructed twice: once using native SAC (ground truth); once using the imported MRAC (imperfect AC). The re-projection method was implemented as follows. The MRAC PET was forward projected to approximately reproduce attenuation-corrected sinograms. The SAC and MRAC images were forward projected and converted to attenuation-correction factors (ACFs). The MRAC ACFs were removed from the MRAC PET sinograms by division; the SAC ACFs were applied by multiplication. The regenerated sinograms were reconstructed by filtered back projection to produce images (SUBAC PET) in which SAC has been substituted for MRAC. Ideally SUBAC PET should match SAC PET.
Via
coregistered T1 images, FreeSurfer (FS; MGH, Boston) was used to define a set of cortical gray matter regions of interest. Regional activity concentrations were extracted for SAC PET, MRAC PET, and SUBAC PET.
Results
SUBAC PET showed substantially smaller root mean square error than MRAC PET with averaged values of 1.5 %
versus
8.1 %.
Conclusions
Re-projection is a viable image-based method for the application of an alternate attenuation correction in neuroimaging. |
---|---|
AbstractList | Purpose
In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2D projection method that allows offline
image-based
reprocessing.
Procedure
2-Deoxy-2-[
18
F]fluoro-
d
-glucose ([
18
F]FDG) brain scans were acquired (Siemens HR+) for six subjects. Attenuation data were obtained using the scanner’s transmission source (SAC). Additional scanning was performed on a Siemens mMR including production of a Dixon-based MR AC (MRAC). The MRAC was imported to the HR+ and the PET data were reconstructed twice: once using native SAC (ground truth); once using the imported MRAC (imperfect AC). The re-projection method was implemented as follows. The MRAC PET was forward projected to approximately reproduce attenuation-corrected sinograms. The SAC and MRAC images were forward projected and converted to attenuation-correction factors (ACFs). The MRAC ACFs were removed from the MRAC PET sinograms by division; the SAC ACFs were applied by multiplication. The regenerated sinograms were reconstructed by filtered back projection to produce images (SUBAC PET) in which SAC has been substituted for MRAC. Ideally SUBAC PET should match SAC PET.
Via
coregistered T1 images, FreeSurfer (FS; MGH, Boston) was used to define a set of cortical gray matter regions of interest. Regional activity concentrations were extracted for SAC PET, MRAC PET, and SUBAC PET.
Results
SUBAC PET showed substantially smaller root mean square error than MRAC PET with averaged values of 1.5 %
versus
8.1 %.
Conclusions
Re-projection is a viable image-based method for the application of an alternate attenuation correction in neuroimaging. PurposeIn dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2D projection method that allows offline image-based reprocessing.Procedure2-Deoxy-2-[18F]fluoro-d-glucose ([18F]FDG) brain scans were acquired (Siemens HR+) for six subjects. Attenuation data were obtained using the scanner’s transmission source (SAC). Additional scanning was performed on a Siemens mMR including production of a Dixon-based MR AC (MRAC). The MRAC was imported to the HR+ and the PET data were reconstructed twice: once using native SAC (ground truth); once using the imported MRAC (imperfect AC). The re-projection method was implemented as follows. The MRAC PET was forward projected to approximately reproduce attenuation-corrected sinograms. The SAC and MRAC images were forward projected and converted to attenuation-correction factors (ACFs). The MRAC ACFs were removed from the MRAC PET sinograms by division; the SAC ACFs were applied by multiplication. The regenerated sinograms were reconstructed by filtered back projection to produce images (SUBAC PET) in which SAC has been substituted for MRAC. Ideally SUBAC PET should match SAC PET. Via coregistered T1 images, FreeSurfer (FS; MGH, Boston) was used to define a set of cortical gray matter regions of interest. Regional activity concentrations were extracted for SAC PET, MRAC PET, and SUBAC PET.ResultsSUBAC PET showed substantially smaller root mean square error than MRAC PET with averaged values of 1.5 % versus 8.1 %.ConclusionsRe-projection is a viable image-based method for the application of an alternate attenuation correction in neuroimaging. In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2D projection method that allows offline image-based reprocessing. 2-Deoxy-2-[ F]fluoro-D-glucose ([ F]FDG) brain scans were acquired (Siemens HR+) for six subjects. Attenuation data were obtained using the scanner's transmission source (SAC). Additional scanning was performed on a Siemens mMR including production of a Dixon-based MR AC (MRAC). The MRAC was imported to the HR+ and the PET data were reconstructed twice: once using native SAC (ground truth); once using the imported MRAC (imperfect AC). The re-projection method was implemented as follows. The MRAC PET was forward projected to approximately reproduce attenuation-corrected sinograms. The SAC and MRAC images were forward projected and converted to attenuation-correction factors (ACFs). The MRAC ACFs were removed from the MRAC PET sinograms by division; the SAC ACFs were applied by multiplication. The regenerated sinograms were reconstructed by filtered back projection to produce images (SUBAC PET) in which SAC has been substituted for MRAC. Ideally SUBAC PET should match SAC PET. Via coregistered T1 images, FreeSurfer (FS; MGH, Boston) was used to define a set of cortical gray matter regions of interest. Regional activity concentrations were extracted for SAC PET, MRAC PET, and SUBAC PET. SUBAC PET showed substantially smaller root mean square error than MRAC PET with averaged values of 1.5 % versus 8.1 %. Re-projection is a viable image-based method for the application of an alternate attenuation correction in neuroimaging. In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2D projection method that allows offline image-based reprocessing.PURPOSEIn dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a new AC can sometimes be generated from existing MR data, its application requires a new reconstruction. We evaluate an approximate 2D projection method that allows offline image-based reprocessing.2-Deoxy-2-[18F]fluoro-D-glucose ([18F]FDG) brain scans were acquired (Siemens HR+) for six subjects. Attenuation data were obtained using the scanner's transmission source (SAC). Additional scanning was performed on a Siemens mMR including production of a Dixon-based MR AC (MRAC). The MRAC was imported to the HR+ and the PET data were reconstructed twice: once using native SAC (ground truth); once using the imported MRAC (imperfect AC). The re-projection method was implemented as follows. The MRAC PET was forward projected to approximately reproduce attenuation-corrected sinograms. The SAC and MRAC images were forward projected and converted to attenuation-correction factors (ACFs). The MRAC ACFs were removed from the MRAC PET sinograms by division; the SAC ACFs were applied by multiplication. The regenerated sinograms were reconstructed by filtered back projection to produce images (SUBAC PET) in which SAC has been substituted for MRAC. Ideally SUBAC PET should match SAC PET. Via coregistered T1 images, FreeSurfer (FS; MGH, Boston) was used to define a set of cortical gray matter regions of interest. Regional activity concentrations were extracted for SAC PET, MRAC PET, and SUBAC PET.PROCEDURE2-Deoxy-2-[18F]fluoro-D-glucose ([18F]FDG) brain scans were acquired (Siemens HR+) for six subjects. Attenuation data were obtained using the scanner's transmission source (SAC). Additional scanning was performed on a Siemens mMR including production of a Dixon-based MR AC (MRAC). The MRAC was imported to the HR+ and the PET data were reconstructed twice: once using native SAC (ground truth); once using the imported MRAC (imperfect AC). The re-projection method was implemented as follows. The MRAC PET was forward projected to approximately reproduce attenuation-corrected sinograms. The SAC and MRAC images were forward projected and converted to attenuation-correction factors (ACFs). The MRAC ACFs were removed from the MRAC PET sinograms by division; the SAC ACFs were applied by multiplication. The regenerated sinograms were reconstructed by filtered back projection to produce images (SUBAC PET) in which SAC has been substituted for MRAC. Ideally SUBAC PET should match SAC PET. Via coregistered T1 images, FreeSurfer (FS; MGH, Boston) was used to define a set of cortical gray matter regions of interest. Regional activity concentrations were extracted for SAC PET, MRAC PET, and SUBAC PET.SUBAC PET showed substantially smaller root mean square error than MRAC PET with averaged values of 1.5 % versus 8.1 %.RESULTSSUBAC PET showed substantially smaller root mean square error than MRAC PET with averaged values of 1.5 % versus 8.1 %.Re-projection is a viable image-based method for the application of an alternate attenuation correction in neuroimaging.CONCLUSIONSRe-projection is a viable image-based method for the application of an alternate attenuation correction in neuroimaging. |
Author | Matan, Cristy Laymon, Charles M. Price, Julie C. Oborski, Matthew J. Becker, Carl R. Minhas, Davneet S. Mountz, James M. |
AuthorAffiliation | 1 Department of Radiology, University of Pittsburgh, Pittsburgh, PA 15213 USA 3 Department of Radiology, Harvard University, Boston, MA USA 2 Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15213 USA |
AuthorAffiliation_xml | – name: 3 Department of Radiology, Harvard University, Boston, MA USA – name: 1 Department of Radiology, University of Pittsburgh, Pittsburgh, PA 15213 USA – name: 2 Department of Bioengineering, University of Pittsburgh, Pittsburgh, PA 15213 USA |
Author_xml | – sequence: 1 givenname: Charles M. surname: Laymon fullname: Laymon, Charles M. email: CML14@pitt.edu organization: Department of Radiology, University of Pittsburgh, Department of Bioengineering, University of Pittsburgh – sequence: 2 givenname: Davneet S. surname: Minhas fullname: Minhas, Davneet S. organization: Department of Radiology, University of Pittsburgh – sequence: 3 givenname: Carl R. surname: Becker fullname: Becker, Carl R. organization: Department of Radiology, University of Pittsburgh – sequence: 4 givenname: Cristy surname: Matan fullname: Matan, Cristy organization: Department of Radiology, University of Pittsburgh – sequence: 5 givenname: Matthew J. surname: Oborski fullname: Oborski, Matthew J. organization: Department of Radiology, University of Pittsburgh, Department of Bioengineering, University of Pittsburgh – sequence: 6 givenname: Julie C. surname: Price fullname: Price, Julie C. organization: A. A. Martinos Center for Biomedical Imaging, Department of Radiology, Massachusetts General Hospital – sequence: 7 givenname: James M. surname: Mountz fullname: Mountz, James M. organization: Department of Radiology, University of Pittsburgh |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29488191$$D View this record in MEDLINE/PubMed |
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Copyright | World Molecular Imaging Society 2018 Molecular Imaging and Biology is a copyright of Springer, (2018). All Rights Reserved. |
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In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving.... In dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving. Although a... PurposeIn dual modality positron emission tomography (PET)/magnetic resonance imaging (MRI), attenuation correction (AC) methods are continually improving.... |
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SubjectTerms | Aged, 80 and over Attenuation Brain Data processing Division Female Fluorine isotopes Glucose Gray Matter - diagnostic imaging Gray Matter - pathology Ground truth Humans Image Processing, Computer-Assisted Image reconstruction Imaging Magnetic Resonance Imaging Medical imaging Medicine Medicine & Public Health Middle Aged Neuroimaging Neurology NMR Nuclear magnetic resonance Positron emission Positron emission tomography Projection Radiology Reprocessing Research Article Substantia grisea Tomography |
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Title | Image-Based 2D Re-Projection for Attenuation Substitution in PET Neuroimaging |
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