Genome-wide association study and candidate gene identification for agronomic traits in 182 upward-growing fruits of C. frutescens and C. annuum

• Published in: Scientific reports Vol. 14; no. 1; pp. 14691 - 17
• Main Authors: Fu, Genying, Yu, Shuang, Wu, Kun, Yang, Mengxian, Altaf, Muhammad Ahsan, Wu, Zhuo, Deng, Qin, Lu, Xu, Fu, Huizhen, Wang, Zhiwei, Cheng, Shanhan
• Format: Journal Article
• Language: English
• Published: London Nature Publishing Group UK 26.06.2024; Nature Publishing Group; Nature Portfolio
• Subjects: 631/1647/2217; 631/1647/2217/2138; 631/1647/514; Agronomic traits; Capsicum - genetics; Capsicum - growth & development; Capsicum annuum; Capsicum frutescens; Cultivars; Fruit - genetics; Fruit - growth & development; Fruits; Genes; Genetic analysis; Genetic diversity; Genetic relationship; Genetic resources; Genome, Plant; Genome-wide association studies; Genome-Wide Association Study; Genomes; Germplasm; Humanities and Social Sciences; Linkage analysis; Linkage Disequilibrium; multidisciplinary; Nucleotide sequence; Pepper; Phenotype; Phenotypic variations; Phylogeny; Plant breeding; Polymorphism, Single Nucleotide; Population genetics; Population structure; Population studies; Principal components analysis; Quantitative Trait Loci; Science; Science (multidisciplinary); Single nucleotide polymorphisms; Single-nucleotide polymorphism; Statistical models; Vegetables; Whole genome resequencing; Whole genome resequencing; Single nucleotide polymorphisms; Genome-wide association study; Pepper; Agronomic traits

Pepper agronomic traits serve as pivotal indicators for characterizing germplasm attributes and correlations. It is important to study differential genotypic variation through phenotypic differences of target traits. Whole genome resequencing was used to sequence the whole genome among different ind...