Plant proteome analysis by mass spectrometry: principles, problems, pitfalls and recent developments

Basic strategy from extraction through fractionation and purification to mass spectrometric analysis is discussed and some plant proteomic applications are reviewed, as are imminent future developments in relevant mass spectrometric instrumentation. The genome of several species has now been elucida...

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Published inPhytochemistry Vol. 65; no. 11; pp. 1449 - 1485
Main Authors Newton, Russell P., Brenton, A.Gareth, Smith, Chris J., Dudley, Edward
Format Book Review Journal Article
LanguageEnglish
Published England Elsevier Ltd 01.06.2004
Subjects
chemical analysis
chloroplasts
electrospray tandem mass spectrometry
literature reviews
mass spectrometry
Mass Spectrometry - instrumentation
Mass Spectrometry - methods
Mass Spectrometry - trends
matrix-assisted laser desorption ionisation-time-of-flight mass spectrometry
mitochondria
Models, Molecular
organelles
plant extracts
plant proteins
Plant Proteins - analysis
Plants - genetics
Plants - metabolism
polyacrylamide gel electrophoresis
post-translational modification
protein-protein interactions
proteome
Proteome - analysis
proteomics
Proteomics - methods
Spectrometry, Mass, Electrospray Ionization
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
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Abstract Basic strategy from extraction through fractionation and purification to mass spectrometric analysis is discussed and some plant proteomic applications are reviewed, as are imminent future developments in relevant mass spectrometric instrumentation. The genome of several species has now been elucidated; these genomes indicate the proteomic potential of the cell. While identification of genomes has been, and continues to be, a technically and intellectually demanding process, the identification of the proteome contains inherently greater difficulties. The proteome of each living cell is dynamic, altering in response to the individual cell's metabolic state and reception of intracellular and extracellular signal molecules, and many of the proteins which are expressed will be post-translationally altered. Thus if the purpose of the proteome analysis is to aid the understanding of protein function and interaction, then it is identification of the proteins in their final state which is required: for this mass spectrometric identification of individual proteins, indicating site and nature of modifications, is essential. Here we review the principles of the methodologies involved in such analyses, give some indication of current achievements in plant proteomics, and indicate imminent and prospective technical developments.
AbstractList The genome of several species has now been elucidated; these genomes indicate the proteomic potential of the cell. While identification of genomes has been, and continues to be, a technically and intellectually demanding process, the identification of the proteome contains inherently greater difficulties. The proteome of each living cell is dynamic, altering in response to the individual cell's metabolic state and reception of intracellular and extracellular signal molecules, and many of the proteins which are expressed will be post-translationally altered. Thus if the purpose of the proteome analysis is to aid the understanding of protein function and interaction, then it is identification of the proteins in their final state which is required: for this mass spectrometric identification of individual proteins, indicating site and nature of modifications, is essential. Here we review the principles of the methodologies involved in such analyses, give some indication of current achievements in plant proteomics, and indicate imminent and prospective technical developments.
Basic strategy from extraction through fractionation and purification to mass spectrometric analysis is discussed and some plant proteomic applications are reviewed, as are imminent future developments in relevant mass spectrometric instrumentation. The genome of several species has now been elucidated; these genomes indicate the proteomic potential of the cell. While identification of genomes has been, and continues to be, a technically and intellectually demanding process, the identification of the proteome contains inherently greater difficulties. The proteome of each living cell is dynamic, altering in response to the individual cell's metabolic state and reception of intracellular and extracellular signal molecules, and many of the proteins which are expressed will be post-translationally altered. Thus if the purpose of the proteome analysis is to aid the understanding of protein function and interaction, then it is identification of the proteins in their final state which is required: for this mass spectrometric identification of individual proteins, indicating site and nature of modifications, is essential. Here we review the principles of the methodologies involved in such analyses, give some indication of current achievements in plant proteomics, and indicate imminent and prospective technical developments.
Author Brenton, A.Gareth
Dudley, Edward
Smith, Chris J.
Newton, Russell P.
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  surname: Newton
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  givenname: A.Gareth
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  givenname: Chris J.
  surname: Smith
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  givenname: Edward
  surname: Dudley
  fullname: Dudley, Edward
  organization: Biomolecular Analysis Mass Spectrometry (BAMS) Facility, Grove Building, University of Wales Swansea, Singleton Park, Swansea SA2 8PP, UK
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Snippet Basic strategy from extraction through fractionation and purification to mass spectrometric analysis is discussed and some plant proteomic applications are...
The genome of several species has now been elucidated; these genomes indicate the proteomic potential of the cell. While identification of genomes has been,...
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StartPage 1449
SubjectTerms chemical analysis
chloroplasts
electrospray tandem mass spectrometry
literature reviews
mass spectrometry
Mass Spectrometry - instrumentation
Mass Spectrometry - methods
Mass Spectrometry - trends
matrix-assisted laser desorption ionisation-time-of-flight mass spectrometry
mitochondria
Models, Molecular
organelles
plant extracts
plant proteins
Plant Proteins - analysis
Plants - genetics
Plants - metabolism
polyacrylamide gel electrophoresis
post-translational modification
protein-protein interactions
proteome
Proteome - analysis
proteomics
Proteomics - methods
Spectrometry, Mass, Electrospray Ionization
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
Title Plant proteome analysis by mass spectrometry: principles, problems, pitfalls and recent developments
URI https://dx.doi.org/10.1016/j.phytochem.2004.04.015
https://www.ncbi.nlm.nih.gov/pubmed/15276445
https://search.proquest.com/docview/17821595
https://search.proquest.com/docview/66750539
Volume 65
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