Bio‐organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities

Summary Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we...

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Published inThe New phytologist Vol. 235; no. 4; pp. 1558 - 1574
Main Authors Deng, Xuhui, Zhang, Na, Li, Yuchan, Zhu, Chengzhi, Qu, Baoyuan, Liu, Hongjun, Li, Rong, Bai, Yang, Shen, Qirong, Falcao Salles, Joana
Format Journal Article
LanguageEnglish
Published England Wiley Subscription Services, Inc 01.08.2022
Subjects
Abundance
Agrochemicals
Bacteria
bacterial wilt
Biological control
Chemical fertilizers
Community composition
community structure
Composition
disease control
Fertilizer application
Fertilizers
field experimentation
function
genes
greenhouse experimentation
Greenhouses
Inoculation
invasion
Metabolites
Metagenomics
microbiome
Microbiomes
mineral fertilizers
nonribosomal peptides
Organic fertilizers
Organic soils
Pathogens
Pesticide use reduction
Pesticides
Priming
Ralstonia solanacearum
responsiveness
Rhizosphere
rhizosphere bacteria
Secondary metabolites
Soil
Soil amendment
soil amendments
Soil microorganisms
Soils
Sphingomonadaceae
suppressiveness
Tomatoes
Wilt
Xanthomonadaceae
Ralstonia solanacearum
invasion
rhizosphere bacteria
suppressiveness
function
responsiveness
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Abstract Summary Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long‐term field experiment where continuous application of bio‐organic fertilizers (BFs) triggered disease suppressiveness when compared to chemical fertilizer application. We further demonstrated in a glasshouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain. Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in nonribosomal peptide synthetase gene abundance. We conclude that priming of the soil microbiome with BF amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.
AbstractList Summary Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long‐term field experiment where continuous application of bio‐organic fertilizers (BFs) triggered disease suppressiveness when compared to chemical fertilizer application. We further demonstrated in a glasshouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain. Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in nonribosomal peptide synthetase gene abundance. We conclude that priming of the soil microbiome with BF amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.
Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive.Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long‐term field experiment where continuous application of bio‐organic fertilizers (BFs) triggered disease suppressiveness when compared to chemical fertilizer application. We further demonstrated in a glasshouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain.Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in nonribosomal peptide synthetase gene abundance.We conclude that priming of the soil microbiome with BF amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.
Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long‐term field experiment where continuous application of bio‐organic fertilizers (BFs) triggered disease suppressiveness when compared to chemical fertilizer application. We further demonstrated in a glasshouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain. Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in nonribosomal peptide synthetase gene abundance. We conclude that priming of the soil microbiome with BF amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.
Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long-term field experiment where continuous application of bio-organic (BF) fertilizers triggered disease suppressiveness when compared to chemical fertilizer (CF) application. We further demonstrated in a greenhouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain. Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in non-ribosomal peptide synthetase (NRPS) gene abundance. We conclude that priming of the soil microbiome with bio-organic fertilizer amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.
Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long-term field experiment where continuous application of bio-organic fertilizers (BFs) triggered disease suppressiveness when compared to chemical fertilizer application. We further demonstrated in a glasshouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain. Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in nonribosomal peptide synthetase gene abundance. We conclude that priming of the soil microbiome with BF amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture. However, understanding the dynamics of suppressiveness and the mechanisms leading to pathogen control remain largely elusive. Here, we investigated the mechanisms used by the rhizosphere microbiome induces bacterial wilt disease suppression in a long-term field experiment where continuous application of bio-organic fertilizers (BFs) triggered disease suppressiveness when compared to chemical fertilizer application. We further demonstrated in a glasshouse experiment that the suppressiveness of the rhizosphere bacterial communities was triggered mainly by changes in community composition rather than only by the abundance of the introduced biocontrol strain. Metagenomics approaches revealed that members of the families Sphingomonadaceae and Xanthomonadaceae with the ability to produce secondary metabolites were enriched in the BF plant rhizosphere but only upon pathogen invasion. We experimentally validated this observation by inoculating bacterial isolates belonging to the families Sphingomonadaceae and Xanthomonadaceae into conducive soil, which led to a significant reduction in pathogen abundance and increase in nonribosomal peptide synthetase gene abundance. We conclude that priming of the soil microbiome with BF amendment fostered reactive bacterial communities in the rhizosphere of tomato plants in response to biotic disturbance.
Author Zhu, Chengzhi
Li, Rong
Shen, Qirong
Deng, Xuhui
Falcao Salles, Joana
Li, Yuchan
Bai, Yang
Zhang, Na
Liu, Hongjun
Qu, Baoyuan
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  organization: University of Groningen
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  orcidid: 0000-0002-8951-7502
  surname: Zhang
  fullname: Zhang, Na
  organization: Nanjing Agricultural University
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  givenname: Yuchan
  orcidid: 0000-0001-9374-5914
  surname: Li
  fullname: Li, Yuchan
  organization: Nanjing Agricultural University
– sequence: 4
  givenname: Chengzhi
  surname: Zhu
  fullname: Zhu, Chengzhi
  organization: Nanjing Agricultural University
– sequence: 5
  givenname: Baoyuan
  orcidid: 0000-0002-9101-4461
  surname: Qu
  fullname: Qu, Baoyuan
  organization: Chinese Academy of Sciences (CAS)
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  orcidid: 0000-0001-9985-6906
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  organization: Nanjing Agricultural University
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  orcidid: 0000-0002-2599-5476
  surname: Li
  fullname: Li, Rong
  email: lirong@njau.edu.cn
  organization: Nanjing Agricultural University
– sequence: 8
  givenname: Yang
  orcidid: 0000-0003-2652-7022
  surname: Bai
  fullname: Bai, Yang
  organization: University of Chinese Academy of Sciences
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  orcidid: 0000-0002-5662-9620
  surname: Shen
  fullname: Shen, Qirong
  organization: Nanjing Agricultural University
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  givenname: Joana
  orcidid: 0000-0003-4317-7263
  surname: Falcao Salles
  fullname: Falcao Salles, Joana
  organization: University of Groningen
BackLink https://www.ncbi.nlm.nih.gov/pubmed/35569105$$D View this record in MEDLINE/PubMed
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Issue 4
Keywords Ralstonia solanacearum
invasion
rhizosphere bacteria
suppressiveness
function
responsiveness
Language English
License This article is protected by copyright. All rights reserved.
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Snippet Summary Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in...
Stimulating the development of soil suppressiveness against certain pathogens represents a sustainable solution toward reducing pesticide use in agriculture....
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StartPage 1558
SubjectTerms Abundance
Agrochemicals
Bacteria
bacterial wilt
Biological control
Chemical fertilizers
Community composition
community structure
Composition
disease control
Fertilizer application
Fertilizers
field experimentation
function
genes
greenhouse experimentation
Greenhouses
Inoculation
invasion
Metabolites
Metagenomics
microbiome
Microbiomes
mineral fertilizers
nonribosomal peptides
Organic fertilizers
Organic soils
Pathogens
Pesticide use reduction
Pesticides
Priming
Ralstonia solanacearum
responsiveness
Rhizosphere
rhizosphere bacteria
Secondary metabolites
Soil
Soil amendment
soil amendments
Soil microorganisms
Soils
Sphingomonadaceae
suppressiveness
Tomatoes
Wilt
Xanthomonadaceae
Title Bio‐organic soil amendment promotes the suppression of Ralstonia solanacearum by inducing changes in the functionality and composition of rhizosphere bacterial communities
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fnph.18221
https://www.ncbi.nlm.nih.gov/pubmed/35569105
https://www.proquest.com/docview/2688884522
https://www.proquest.com/docview/2664783477
https://www.proquest.com/docview/2718296205
Volume 235
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