Allelic to genome wide perspectives of swine genetic variation to litter size and its component traits

Litter size is a complex and sex limited trait that depends on various biological, managemental and environmental factors. Owing to its low heritability it is inefficaciously selected by traditional methods. However, due to higher heritability of ovulation rate and embryo survival, selection based o...

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Published inMolecular biology reports Vol. 50; no. 4; pp. 3705 - 3721
Main Authors Vaishnav, Sakshi, Chauhan, Anuj, Ajay, Argana, Saini, Babu Lal, Kumar, Subodh, Kumar, Amit, Bhushan, Bharat, Gaur, Gyanendra Kumar
Format Journal Article
LanguageEnglish
Published Dordrecht Springer Netherlands 01.04.2023
Springer Nature B.V
Subjects
Animal Anatomy
Animal Biochemistry
Animals
Biomedical and Life Sciences
Environmental factors
Female
Genes
Genetic diversity
Genetic Variation
Genome-wide association studies
Genome-Wide Association Study
Genomes
Heritability
Histology
Life Sciences
Litter size
Litter Size - genetics
Morphology
Ovulation
Phenotype
Polymorphism, Single Nucleotide - genetics
Pregnancy
Quantitative trait loci
Quantitative Trait Loci - genetics
Review
Single-nucleotide polymorphism
Swine - genetics
QTL analysis
Number born alive
Litter size
Total number born
Candidate gene approach
Genome wide association study
Online AccessGet full text

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Abstract Litter size is a complex and sex limited trait that depends on various biological, managemental and environmental factors. Owing to its low heritability it is inefficaciously selected by traditional methods. However, due to higher heritability of ovulation rate and embryo survival, selection based on component traits of litter size is advocated. QTL analysis and candidate gene approach are among the various supplementary/alternate strategies for selection of litter size. QTL analysis is aimed at identifying genomic regions affecting trait of interest significantly. Candidate gene approach necessitates identification of genes potentially affecting the trait. There are various genes that significantly affect litter size and its component traits viz. ESR, LEP, BF, IGFBP, RBP4, PRLR, CTNNAL1, WNT10B, TCF12, DAZ, and RNF4. These genes affect litter size in a complex interacting manner. Lately, genome wide association study (GWAS) have been utilized to unveil the genetic and biological background of litter traits, and elucidate the genes governing litter size. Favorable SNPs in these genes have been identified and offers a scope for inclusion in selection programs thereby increasing breeding efficiency and profit in pigs. The review provides a comprehensive coverage of investigations carried out globally to unravel the genetic variation in litter size and its component traits in pigs, both at allelic and genome wide level. It offers a current perspective on different strategies including the profiling of candidate genes, QTLs, and genome wide association studies as an aid to efficient selection for litter size and its component traits. Graphical abstract
AbstractList Litter size is a complex and sex limited trait that depends on various biological, managemental and environmental factors. Owing to its low heritability it is inefficaciously selected by traditional methods. However, due to higher heritability of ovulation rate and embryo survival, selection based on component traits of litter size is advocated. QTL analysis and candidate gene approach are among the various supplementary/alternate strategies for selection of litter size. QTL analysis is aimed at identifying genomic regions affecting trait of interest significantly. Candidate gene approach necessitates identification of genes potentially affecting the trait. There are various genes that significantly affect litter size and its component traits viz. ESR, LEP, BF, IGFBP, RBP4, PRLR, CTNNAL1, WNT10B, TCF12, DAZ, and RNF4. These genes affect litter size in a complex interacting manner. Lately, genome wide association study (GWAS) have been utilized to unveil the genetic and biological background of litter traits, and elucidate the genes governing litter size. Favorable SNPs in these genes have been identified and offers a scope for inclusion in selection programs thereby increasing breeding efficiency and profit in pigs. The review provides a comprehensive coverage of investigations carried out globally to unravel the genetic variation in litter size and its component traits in pigs, both at allelic and genome wide level. It offers a current perspective on different strategies including the profiling of candidate genes, QTLs, and genome wide association studies as an aid to efficient selection for litter size and its component traits. Graphical abstract
Litter size is a complex and sex limited trait that depends on various biological, managemental and environmental factors. Owing to its low heritability it is inefficaciously selected by traditional methods. However, due to higher heritability of ovulation rate and embryo survival, selection based on component traits of litter size is advocated. QTL analysis and candidate gene approach are among the various supplementary/alternate strategies for selection of litter size. QTL analysis is aimed at identifying genomic regions affecting trait of interest significantly. Candidate gene approach necessitates identification of genes potentially affecting the trait. There are various genes that significantly affect litter size and its component traits viz. ESR, LEP, BF, IGFBP, RBP4, PRLR, CTNNAL1, WNT10B, TCF12, DAZ, and RNF4. These genes affect litter size in a complex interacting manner. Lately, genome wide association study (GWAS) have been utilized to unveil the genetic and biological background of litter traits, and elucidate the genes governing litter size. Favorable SNPs in these genes have been identified and offers a scope for inclusion in selection programs thereby increasing breeding efficiency and profit in pigs. The review provides a comprehensive coverage of investigations carried out globally to unravel the genetic variation in litter size and its component traits in pigs, both at allelic and genome wide level. It offers a current perspective on different strategies including the profiling of candidate genes, QTLs, and genome wide association studies as an aid to efficient selection for litter size and its component traits.
Author Chauhan, Anuj
Gaur, Gyanendra Kumar
Ajay, Argana
Vaishnav, Sakshi
Kumar, Subodh
Kumar, Amit
Saini, Babu Lal
Bhushan, Bharat
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Issue 4
Keywords QTL analysis
Number born alive
Litter size
Total number born
Candidate gene approach
Genome wide association study
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PublicationDecade 2020
PublicationPlace Dordrecht
PublicationPlace_xml – name: Dordrecht
– name: Netherlands
PublicationSubtitle An International Journal on Molecular and Cellular Biology
PublicationTitle Molecular biology reports
PublicationTitleAbbrev Mol Biol Rep
PublicationTitleAlternate Mol Biol Rep
PublicationYear 2023
Publisher Springer Netherlands
Springer Nature B.V
Publisher_xml – name: Springer Netherlands
– name: Springer Nature B.V
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Snippet Litter size is a complex and sex limited trait that depends on various biological, managemental and environmental factors. Owing to its low heritability it is...
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SubjectTerms Animal Anatomy
Animal Biochemistry
Animals
Biomedical and Life Sciences
Environmental factors
Female
Genes
Genetic diversity
Genetic Variation
Genome-wide association studies
Genome-Wide Association Study
Genomes
Heritability
Histology
Life Sciences
Litter size
Litter Size - genetics
Morphology
Ovulation
Phenotype
Polymorphism, Single Nucleotide - genetics
Pregnancy
Quantitative trait loci
Quantitative Trait Loci - genetics
Review
Single-nucleotide polymorphism
Swine - genetics
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Title Allelic to genome wide perspectives of swine genetic variation to litter size and its component traits
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