Molecular signatures from multi‐omics of autism spectrum disorders and schizophrenia
The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to explain the complex features of ASD, such as impaired social communication, social interaction deficits, and restricted and repetitive patterns of beh...
Saved in:
Published in | Journal of neurochemistry Vol. 159; no. 4; pp. 647 - 659 |
---|---|
Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
England
Blackwell Publishing Ltd
01.11.2021
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to explain the complex features of ASD, such as impaired social communication, social interaction deficits, and restricted and repetitive patterns of behavior. However, recent psychiatric genetic studies have identified numerous risk genes and chromosome loci (copy number variation: CNV) which enable us to analyze at the single gene level and utilize system‐level approaches. In this review, we focus on ASD as a major neurodevelopmental disorder and review recent findings mainly from the bioinformatics of omics studies. Additionally, by comparing these data with other major psychiatric disorders, including schizophrenia (SCZ), we identify unique characteristics of both diseases from multiple enrichment, pathway, and protein–protein interaction networks (PPIs) analyses using susceptible genes found in recent large‐scale genetic studies. These unified, systematic approaches highlight unique characteristics of both disorders from multiple aspects and demonstrate how convergent pathways can contribute to an understanding of the complex etiology of such neurodevelopmental and neuropsychiatric disorders.
The genetic and clinical heterogeneity of autism spectrum disorder (ASD) and schizophrenia (SCZ) perturb unifying possible biological hypotheses to tackle these disorders. However, recent large‐scale human genetic studies and genome‐wide omics analysis enable us to perform multi‐omic system‐level analysis. We highlight the achievements of recent omics studies and emphasize how the multi‐omics approach is suitable to sort out the complex etiology of these disorders. In addition, we show unique characteristics of these disorders as well as convergent pathways and core networks. We also discuss limitations and future perspectives of the method toward understanding the pathophysiology of these disorders. |
---|---|
AbstractList | The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to explain the complex features of ASD, such as impaired social communication, social interaction deficits, and restricted and repetitive patterns of behavior. However, recent psychiatric genetic studies have identified numerous risk genes and chromosome loci (copy number variation: CNV) which enable us to analyze at the single gene level and utilize system‐level approaches. In this review, we focus on ASD as a major neurodevelopmental disorder and review recent findings mainly from the bioinformatics of omics studies. Additionally, by comparing these data with other major psychiatric disorders, including schizophrenia (SCZ), we identify unique characteristics of both diseases from multiple enrichment, pathway, and protein–protein interaction networks (PPIs) analyses using susceptible genes found in recent large‐scale genetic studies. These unified, systematic approaches highlight unique characteristics of both disorders from multiple aspects and demonstrate how convergent pathways can contribute to an understanding of the complex etiology of such neurodevelopmental and neuropsychiatric disorders. The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to explain the complex features of ASD, such as impaired social communication, social interaction deficits, and restricted and repetitive patterns of behavior. However, recent psychiatric genetic studies have identified numerous risk genes and chromosome loci (copy number variation: CNV) which enable us to analyze at the single gene level and utilize system‐level approaches. In this review, we focus on ASD as a major neurodevelopmental disorder and review recent findings mainly from the bioinformatics of omics studies. Additionally, by comparing these data with other major psychiatric disorders, including schizophrenia (SCZ), we identify unique characteristics of both diseases from multiple enrichment, pathway, and protein–protein interaction networks (PPIs) analyses using susceptible genes found in recent large‐scale genetic studies. These unified, systematic approaches highlight unique characteristics of both disorders from multiple aspects and demonstrate how convergent pathways can contribute to an understanding of the complex etiology of such neurodevelopmental and neuropsychiatric disorders. The genetic and clinical heterogeneity of autism spectrum disorder (ASD) and schizophrenia (SCZ) perturb unifying possible biological hypotheses to tackle these disorders. However, recent large‐scale human genetic studies and genome‐wide omics analysis enable us to perform multi‐omic system‐level analysis. We highlight the achievements of recent omics studies and emphasize how the multi‐omics approach is suitable to sort out the complex etiology of these disorders. In addition, we show unique characteristics of these disorders as well as convergent pathways and core networks. We also discuss limitations and future perspectives of the method toward understanding the pathophysiology of these disorders. Abstract The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to explain the complex features of ASD, such as impaired social communication, social interaction deficits, and restricted and repetitive patterns of behavior. However, recent psychiatric genetic studies have identified numerous risk genes and chromosome loci (copy number variation: CNV) which enable us to analyze at the single gene level and utilize system‐level approaches. In this review, we focus on ASD as a major neurodevelopmental disorder and review recent findings mainly from the bioinformatics of omics studies. Additionally, by comparing these data with other major psychiatric disorders, including schizophrenia (SCZ), we identify unique characteristics of both diseases from multiple enrichment, pathway, and protein–protein interaction networks (PPIs) analyses using susceptible genes found in recent large‐scale genetic studies. These unified, systematic approaches highlight unique characteristics of both disorders from multiple aspects and demonstrate how convergent pathways can contribute to an understanding of the complex etiology of such neurodevelopmental and neuropsychiatric disorders. image |
Author | Nomura, Jun Takumi, Toru Mardo, Matthew |
Author_xml | – sequence: 1 givenname: Jun orcidid: 0000-0003-0817-2643 surname: Nomura fullname: Nomura, Jun organization: Kobe University School of Medicine – sequence: 2 givenname: Matthew surname: Mardo fullname: Mardo, Matthew organization: Harvard University – sequence: 3 givenname: Toru orcidid: 0000-0001-7153-266X surname: Takumi fullname: Takumi, Toru email: takumit@med.kobe-u.ac.jp organization: Kobe University School of Medicine |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/34537986$$D View this record in MEDLINE/PubMed |
BookMark | eNp10EtO5DAQBmALgaBpZsEFRpbYDIuAHTuOvUQthod4bGC2keNUwK0k7rFjoWbFETgjJ8HQzSxGojalkj79Kv27aHNwAyC0T8kRTXM8H8wRLQrKN9CE8pJmnBZqE00IyfOMEZ7voN0Q5oRQwQXdRjuMF6xUUkzQn2vXgYmd9jjYh0GP0UPArXc97mM32reXV9dbE7BrsY6jDT0OCzCjjz1ubHC-AR-wHhoczKN9dotHD4PVe2ir1V2AH-s9Rfe_T-9m59nV7dnF7OQqM5wqnpWMFVRKwww3wAQRtcxrVdRNXreikSRvZasLysC0kqWTC86kgZyBkqWhmk3Rr1Xuwru_EcJY9TYY6Do9gIuhyouSl0wopRI9-I_OXfRD-i4pJYikQpKkDlfKeBeCh7ZaeNtrv6woqT7KrlLZ1WfZyf5cJ8a6h-af_Go3geMVeLIdLL9Pqi5vZqvIdwINi0w |
CitedBy_id | crossref_primary_10_1002_aur_2939 crossref_primary_10_1093_bib_bbae098 crossref_primary_10_1111_jnc_15595 crossref_primary_10_1016_j_neubiorev_2023_105476 crossref_primary_10_3390_ijms231911902 crossref_primary_10_1007_s00221_022_06448_x crossref_primary_10_3390_app13158980 crossref_primary_10_3389_fmars_2023_1305763 crossref_primary_10_1016_j_pharmthera_2023_108564 crossref_primary_10_3390_biomedicines11020289 |
Cites_doi | 10.1038/s41593-020-00764-7 10.1126/science.aaz6063 10.1101/gr.262295.120 10.1016/j.biopsych.2019.07.029 10.1093/nar/gky1079 10.1038/s41398-019-0390-0 10.1093/nar/gks808 10.1002/aur.2240 10.1371/journal.pone.0144172 10.1016/j.cell.2016.10.031 10.1038/nature13772 10.1038/s41398-019-0584-5 10.1038/s41380-021-01030-3 10.1093/bfgp/elab024 10.1073/pnas.1102233108 10.1021/pr300910n 10.1111/pcn.12524 10.1093/hmg/ddz178 10.3389/fgene.2019.00364 10.3389/fmicb.2015.01359 10.1038/nmeth.4077 10.1038/nrg3934 10.1126/science.aba3163 10.1126/science.aat8127 10.1093/jb/mvy022 10.1093/nar/gky1131 10.1016/j.cell.2019.12.036 10.1038/nrg.2018.4 10.1016/j.ajhg.2009.11.017 10.1002/ajmg.b.32503 10.1016/j.cell.2012.02.039 10.1016/j.neubiorev.2019.04.012 10.1176/appi.ajp.2008.08091354 10.1016/j.neubiorev.2020.06.033 10.1016/j.conb.2017.12.004 10.15252/embr.202051524 10.1126/science.aav9776 10.1038/nmeth.4083 10.1007/s10048-011-0297-2 10.1186/s13229-020-00334-5 10.1038/nature13595 10.1016/j.gde.2021.02.014 10.1016/j.psychres.2020.112922 10.1038/s41593-020-0604-z 10.1093/nar/gkx1013 10.1038/s41380-020-0844-z 10.1001/jamapsychiatry.2017.4685 10.1038/s41576-018-0066-2 10.1038/s41380-020-00947-5 10.1016/j.neures.2021.03.005 10.1016/j.cell.2018.06.016 10.1038/npp.2017.115 10.1038/nature20612 10.1126/science.aav8130 10.1038/s41380-020-0807-4 10.1038/nature19357 10.1016/j.rasd.2013.09.006 10.1038/s41593-020-00787-0 10.1126/science.aaz8627 10.1038/s41380-020-00940-y 10.1038/s41467-020-18526-1 10.1016/j.schres.2019.08.032 10.1186/2040-2392-4-36 10.1016/j.neuron.2015.07.033 10.1016/j.cell.2012.10.043 10.1038/s41580-020-00315-9 10.1093/nar/gky1120 10.1007/s12035-020-01879-5 10.1038/s41467-019-10897-4 10.1111/j.1471-4159.2007.04453.x 10.1038/s41593-020-0621-y 10.1016/j.celrep.2020.108263 |
ContentType | Journal Article |
Copyright | 2021 International Society for Neurochemistry 2021 International Society for Neurochemistry. Copyright © 2021 International Society for Neurochemistry |
Copyright_xml | – notice: 2021 International Society for Neurochemistry – notice: 2021 International Society for Neurochemistry. – notice: Copyright © 2021 International Society for Neurochemistry |
DBID | CGR CUY CVF ECM EIF NPM AAYXX CITATION 7QR 7TK 7U7 7U9 8FD C1K FR3 H94 P64 7X8 |
DOI | 10.1111/jnc.15514 |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef Chemoreception Abstracts Neurosciences Abstracts Toxicology Abstracts Virology and AIDS Abstracts Technology Research Database Environmental Sciences and Pollution Management Engineering Research Database AIDS and Cancer Research Abstracts Biotechnology and BioEngineering Abstracts MEDLINE - Academic |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef Virology and AIDS Abstracts Technology Research Database Toxicology Abstracts AIDS and Cancer Research Abstracts Chemoreception Abstracts Engineering Research Database Neurosciences Abstracts Biotechnology and BioEngineering Abstracts Environmental Sciences and Pollution Management MEDLINE - Academic |
DatabaseTitleList | Virology and AIDS Abstracts MEDLINE CrossRef |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Anatomy & Physiology Chemistry |
EISSN | 1471-4159 |
EndPage | 659 |
ExternalDocumentID | 10_1111_jnc_15514 34537986 JNC15514 |
Genre | reviewArticle Research Support, Non-U.S. Gov't Journal Article Review |
GrantInformation_xml | – fundername: NCNP funderid: 30‐9 – fundername: Hyogo Science and Technology Association – fundername: Tokyo Biochemical Research Foundation – fundername: Takeda Science Foundation – fundername: SENSHIN Medical Research Foundation – fundername: Research Foundation for Opto‐Science and Technology – fundername: Kawano Masanori Memorial Public Interest Incorporated Foundation for Promotion of Pediatrics; Taiju Life Social Welfare Foundation – fundername: Smoking Research Foundation – fundername: Japan Society for the Promotion of Science funderid: 16H06316; 16H06463; 21K07820; 21H04813; 21H00202 |
GroupedDBID | --- -~X .3N .55 .GA .GJ .Y3 05W 0R~ 10A 1OB 1OC 24P 29L 2WC 31~ 33P 36B 3SF 4.4 41~ 50Y 50Z 51W 51X 52M 52N 52O 52P 52R 52S 52T 52U 52V 52W 52X 53G 5GY 5HH 5LA 5RE 5VS 66C 702 7PT 8-0 8-1 8-3 8-4 8-5 8UM 930 A01 A03 AAESR AAEVG AAHHS AANLZ AAONW AASGY AAXRX AAYJJ AAZKR ABCQN ABCUV ABEML ABIVO ABLJU ABPVW ABQWH ABXGK ACAHQ ACBWZ ACCFJ ACCZN ACFBH ACGFO ACGFS ACGOD ACGOF ACIWK ACMXC ACNCT ACPOU ACPRK ACSCC ACXBN ACXQS ADBBV ADBTR ADEOM ADIZJ ADKYN ADMGS ADOZA ADXAS ADZMN AEEZP AEGXH AEIGN AEIMD AENEX AEQDE AEUQT AEUYR AFBPY AFEBI AFFPM AFGKR AFPWT AFRAH AFZJQ AHBTC AHEFC AI. AIACR AIAGR AITYG AIURR AIWBW AJBDE ALAGY ALMA_UNASSIGNED_HOLDINGS ALUQN AMBMR AMYDB ASPBG ATUGU AVWKF AZBYB AZFZN AZVAB BAFTC BAWUL BDRZF BFHJK BHBCM BMXJE BROTX BRXPI BY8 C45 CAG COF CS3 D-6 D-7 D-E D-F DC6 DCZOG DIK DPXWK DR2 DRFUL DRMAN DRSTM DU5 E3Z EBS EJD EMOBN ESX EX3 F00 F01 F04 F5P FEDTE FIJ FUBAC FZ0 G-S G.N GAKWD GODZA GX1 H.X HF~ HGLYW HH5 HVGLF HZI HZ~ IH2 IHE IPNFZ IX1 J0M K48 KBYEO LATKE LC2 LC3 LEEKS LH4 LITHE LOXES LP6 LP7 LUTES LW6 LYRES MEWTI MK4 MRFUL MRMAN MRSTM MSFUL MSMAN MSSTM MVM MXFUL MXMAN MXSTM N04 N05 N9A NF~ O66 O9- OIG OK1 OVD P2P P2W P2X P2Z P4B P4D PALCI PQQKQ Q.N Q11 QB0 R.K RIWAO RJQFR ROL RX1 SAMSI SUPJJ TEORI TWZ UB1 V8K VH1 W8V W99 WBKPD WIH WIJ WIK WIN WNSPC WOHZO WOW WQJ WRC WUP WXI WXSBR WYISQ X7M XG1 XJT YFH YNH YOC YUY ZGI ZXP ZZTAW ~IA ~KM ~WT ACSMX CGR CUY CVF ECM EIF NPM ZA5 AAYXX CITATION 7QR 7TK 7U7 7U9 8FD C1K FR3 H94 P64 7X8 |
ID | FETCH-LOGICAL-c4194-7335188c3c4ce3606b82b95bd2bf6d802f8fa513ecf8380246438ce23e987c1a3 |
IEDL.DBID | DR2 |
ISSN | 0022-3042 |
IngestDate | Fri Aug 16 04:20:50 EDT 2024 Fri Aug 30 23:11:10 EDT 2024 Fri Aug 23 02:03:47 EDT 2024 Thu May 23 23:37:58 EDT 2024 Sat Aug 24 00:59:14 EDT 2024 |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 4 |
Keywords | gene ontology protein-protein interaction network schizophrenia autism spectrum disorder neurodevelopmental disorder enrichment analysis |
Language | English |
License | 2021 International Society for Neurochemistry. |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c4194-7335188c3c4ce3606b82b95bd2bf6d802f8fa513ecf8380246438ce23e987c1a3 |
Notes | ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-3 content type line 23 ObjectType-Review-1 |
ORCID | 0000-0001-7153-266X 0000-0003-0817-2643 |
PMID | 34537986 |
PQID | 2596081680 |
PQPubID | 31528 |
PageCount | 13 |
ParticipantIDs | proquest_miscellaneous_2574736999 proquest_journals_2596081680 crossref_primary_10_1111_jnc_15514 pubmed_primary_34537986 wiley_primary_10_1111_jnc_15514_JNC15514 |
PublicationCentury | 2000 |
PublicationDate | November 2021 |
PublicationDateYYYYMMDD | 2021-11-01 |
PublicationDate_xml | – month: 11 year: 2021 text: November 2021 |
PublicationDecade | 2020 |
PublicationPlace | England |
PublicationPlace_xml | – name: England – name: New York |
PublicationTitle | Journal of neurochemistry |
PublicationTitleAlternate | J Neurochem |
PublicationYear | 2021 |
Publisher | Blackwell Publishing Ltd |
Publisher_xml | – name: Blackwell Publishing Ltd |
References | 2018; 362 2018; 163 2021; 24 2021; 68 2007; 101 2017; 42 2013; 4 2021; 20 2021; 22 2019; 10 2020; 369 2016; 540 2020; 13 2020; 57 2020; 287 2011; 12 2020; 11 2013; 7 2012; 11 2019; 364 2018; 48 2018; 46 2018; 174 2017; 71 2019; 20 2020; 370 2015; 87 2019; 28 2009; 166 2003; 4 2020; 87 2018; 75 2014; 515 2019; 9 2015; 6 2015; 16 2020; 180 2015; 10 2013; 41 2016; 167 2020; 33 2012; 148 2016; 14 2014; 511 2016; 13 2018; 19 2012; 151 2010; 86 2011; 108 2020; 30 2016; 537 2021 2020 2020; 110 2019; 47 2021; 171 2019; 214 2020; 26 2020; 118 2020; 25 2020; 23 2016; 171 e_1_2_11_70_1 e_1_2_11_72_1 e_1_2_11_32_1 e_1_2_11_55_1 e_1_2_11_30_1 e_1_2_11_57_1 e_1_2_11_36_1 e_1_2_11_51_1 e_1_2_11_74_1 e_1_2_11_13_1 e_1_2_11_34_1 e_1_2_11_53_1 e_1_2_11_11_1 e_1_2_11_29_1 e_1_2_11_6_1 e_1_2_11_27_1 e_1_2_11_4_1 e_1_2_11_48_1 e_1_2_11_2_1 e_1_2_11_60_1 e_1_2_11_20_1 e_1_2_11_45_1 e_1_2_11_66_1 e_1_2_11_47_1 e_1_2_11_68_1 e_1_2_11_24_1 e_1_2_11_41_1 e_1_2_11_62_1 e_1_2_11_8_1 e_1_2_11_22_1 e_1_2_11_43_1 e_1_2_11_64_1 e_1_2_11_17_1 e_1_2_11_15_1 e_1_2_11_59_1 e_1_2_11_38_1 e_1_2_11_19_1 e_1_2_11_50_1 e_1_2_11_71_1 Bader G. D. (e_1_2_11_3_1) 2003; 4 e_1_2_11_10_1 e_1_2_11_31_1 e_1_2_11_56_1 e_1_2_11_58_1 e_1_2_11_14_1 e_1_2_11_35_1 e_1_2_11_52_1 e_1_2_11_73_1 e_1_2_11_12_1 e_1_2_11_33_1 e_1_2_11_54_1 e_1_2_11_7_1 e_1_2_11_28_1 e_1_2_11_5_1 e_1_2_11_26_1 e_1_2_11_49_1 e_1_2_11_61_1 e_1_2_11_21_1 e_1_2_11_44_1 e_1_2_11_67_1 e_1_2_11_46_1 e_1_2_11_69_1 e_1_2_11_25_1 e_1_2_11_40_1 e_1_2_11_63_1 e_1_2_11_9_1 e_1_2_11_23_1 e_1_2_11_42_1 e_1_2_11_65_1 e_1_2_11_18_1 e_1_2_11_16_1 e_1_2_11_37_1 e_1_2_11_39_1 |
References_xml | – year: 2020 article-title: Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer’s disease‐like pathology in human cerebral organoids publication-title: Molecular Psychiatry – volume: 364 start-page: 685 year: 2019 end-page: 689 article-title: Single‐cell genomics identifies cell type–specific molecular changes in autism publication-title: Science – volume: 118 start-page: 111 year: 2020 end-page: 120 article-title: Gastrointestinal alterations in autism spectrum disorder: What do we know? publication-title: Neuroscience and Biobehavioral Reviews – volume: 171 start-page: 114 year: 2021 end-page: 123 article-title: Transcriptome analysis of human neural cells derived from isogenic embryonic stem cells with 16p11.2 deletion publication-title: Neuroscience Research – volume: 20 start-page: 51 year: 2019 end-page: 63 article-title: Autism spectrum disorder: insights into convergent mechanisms from transcriptomics publication-title: Nature Reviews Genetics – volume: 24 start-page: 425 year: 2021 end-page: 436 article-title: Transcriptome‐scale spatial gene expression in the human dorsolateral prefrontal cortex publication-title: Nature Neuroscience – volume: 163 start-page: 447 year: 2018 end-page: 455 article-title: Postsynaptic density proteins and their involvement in neurodevelopmental disorders publication-title: Journal of Biochemistry – volume: 30 start-page: 1317 year: 2020 end-page: 1331 article-title: High‐throughput single‐cell functional elucidation of neurodevelopmental disease‐associated genes reveals convergent mechanisms altering neuronal differentiation publication-title: Genome Research – volume: 4 start-page: 36 year: 2013 article-title: SFARI Gene 2.0: a community‐driven knowledgebase for the autism spectrum disorders (ASDs) publication-title: Molecular Autism – volume: 171 start-page: 1170 year: 2016 end-page: 1179 article-title: Cognitive analysis of schizophrenia risk genes that function as epigenetic regulators of gene expression publication-title: American Journal of Medical Genetics Part B: Neuropsychiatric Genetics – volume: 25 start-page: 2695 year: 2020 end-page: 2711 article-title: Developmental excitation‐inhibition imbalance underlying psychoses revealed by single‐cell analyses of discordant twins‐derived cerebral organoids publication-title: Molecular Psychiatry – volume: 22 start-page: 96 year: 2021 end-page: 118 article-title: Gene regulation by long non‐coding RNAs and its biological functions publication-title: Nature Reviews Molecular Cell Biology – volume: 174 start-page: 505 year: 2018 end-page: 520 article-title: The psychiatric cell map initiative: A convergent systems biological approach to illuminating key molecular pathways in neuropsychiatric disorders publication-title: Cell – volume: 364 start-page: 89 year: 2019 end-page: 93 article-title: Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis publication-title: Science – volume: 167 start-page: 1385 year: 2016 end-page: 1397.e11 article-title: Histone acetylome‐wide association study of autism spectrum disorder publication-title: Cell – volume: 287 start-page: 112922 year: 2020 article-title: Prevalence of comorbid psychiatric disorders among people with autism spectrum disorder: An umbrella review of systematic reviews and meta‐analyses publication-title: Psychiatry Research – volume: 16 start-page: 441 year: 2015 end-page: 458 article-title: Systems biology and gene networks in neurodevelopmental and neurodegenerative disorders publication-title: Nature Reviews Genetics – volume: 47 start-page: D1005 issue: D1 year: 2019 end-page: D1012 article-title: The NHGRI‐EBI GWAS Catalog of published genome‐wide association studies, targeted arrays and summary statistics 2019 publication-title: Nucleic Acids Research – volume: 11 start-page: 5856 year: 2012 end-page: 5862 article-title: Metabolic perturbance in autism spectrum disorders: A metabolomics study publication-title: Journal of Proteome Research – volume: 110 start-page: 60 year: 2020 end-page: 76 article-title: Behavioral neuroscience of autism publication-title: Neuroscience and Biobehavioral Reviews – volume: 9 start-page: 1 year: 2019 end-page: 12 article-title: Neurodevelopmental heterogeneity and computational approaches for understanding autism publication-title: Translational Psychiatry – volume: 369 start-page: 270 year: 2020 end-page: 275 article-title: A brainwide atlas of synapses across the mouse life span publication-title: Science – volume: 20 start-page: 1 issue: 4 year: 2021 end-page: 12 article-title: Review of multi‐omics data resources and integrative analysis for human brain disorders publication-title: Briefings in Functional Genomics – volume: 148 start-page: 1223 year: 2012 end-page: 1241 article-title: CNVs: Harbingers of a rare variant revolution in psychiatric genetics publication-title: Cell – volume: 26 start-page: 1060 issue: 4 year: 2020 end-page: 1074 article-title: Molecular landscape of long noncoding RNAs in brain disorders publication-title: Molecular Psychiatry – volume: 46 start-page: D380 issue: D1 year: 2018 end-page: D386 article-title: TRRUST v2: An expanded reference database of human and mouse transcriptional regulatory interactions publication-title: Nucleic Acids Research – volume: 537 start-page: 675 year: 2016 end-page: 679 article-title: CHD8 haploinsufficiency results in autistic‐like phenotypes in mice publication-title: Nature – volume: 87 start-page: 684 year: 2015 end-page: 698 article-title: Review excitatory/inhibitory balance and circuit homeostasis in autism spectrum disorders publication-title: Neuron – volume: 68 start-page: 57 year: 2021 end-page: 63 article-title: Copy number variation and neuropsychiatric illness publication-title: Current Opinion in Genetics and Development – volume: 87 start-page: 294 year: 2020 end-page: 304 article-title: The Landscape of Circular RNA Expression in the Human Brain publication-title: Biological Psychiatry – volume: 14 start-page: 61 year: 2016 end-page: 64 article-title: A scored human protein‐protein interaction network to catalyze genomic interpretation publication-title: Nature Methods – volume: 9 start-page: 1 year: 2019 end-page: 15 article-title: Gene network analysis reveals a role for striatal glutamatergic receptors in dysregulated risk‐assessment behavior of autism mouse models publication-title: Translational Psychiatry – volume: 42 start-page: 2602 year: 2017 end-page: 2611 article-title: Analysis of LINE‐1 elements in DNA from postmortem brains of individuals with schizophrenia publication-title: Neuropsychopharmacology – volume: 75 start-page: 514 year: 2018 end-page: 523 article-title: The emerging clinical neuroscience of autism spectrum disorder a review publication-title: JAMA Psychiatry – volume: 71 start-page: 508 year: 2017 end-page: 517 article-title: Rodent models of genetic and chromosomal variations in psychiatric disorders publication-title: Psychiatry and Clinical Neurosciences – volume: 362 start-page: eaat8127 issue: 6420 year: 2018 article-title: Transcriptome‐wide isoform‐level dysregulation in ASD, schizophrenia, and bipolar disorder publication-title: Science – volume: 10 start-page: 1 year: 2015 end-page: 8 article-title: No evidence for enrichment in schizophrenia for common allelic associations at imprinted loci publication-title: PLoS One – volume: 13 start-page: 966 year: 2016 end-page: 967 article-title: OmniPath: Guidelines and gateway for literature‐curated signaling pathway resources publication-title: Nature Methods – volume: 214 start-page: 70 year: 2019 end-page: 75 article-title: Using machine learning to explain the heterogeneity of schizophrenia. Realizing the promise and avoiding the hype publication-title: Schizophrenia Research – volume: 23 start-page: 510 issue: 4 year: 2020 end-page: 519 article-title: Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk publication-title: Nature Neuroscience – volume: 108 start-page: 4920 issue: 12 year: 2011 end-page: 4925 article-title: Gain‐of‐function glutamate receptor interacting protein 1 variants alter GluA2 recycling and surface distribution in patients with autism publication-title: Proceedings of the National Academy of Sciences – volume: 515 start-page: 209 issue: 7526 year: 2014 end-page: 215 article-title: Synaptic, transcriptional and chromatin genes disrupted in autism publication-title: Nature – volume: 41 start-page: e1 issue: 1 year: 2013 article-title: Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next‐generation sequencing‐based diversity studies publication-title: Nucleic Acids Research – volume: 151 start-page: 1097 year: 2012 end-page: 1112 article-title: Microcephaly gene links trithorax and REST/NRSF to control neural stem cell proliferation and differentiation publication-title: Cell – volume: 7 start-page: 1595 issue: 12 year: 2013 end-page: 1616 article-title: Comorbidity in autism spectrum disorder: A literature review publication-title: Research in Autism Spectrum Disorders – volume: 19 start-page: 299 year: 2018 end-page: 310 article-title: Integrative omics for health and disease publication-title: Nature Reviews Genetics – volume: 57 start-page: 2279 year: 2020 end-page: 2289 article-title: Cell‐type‐specific analysis of molecular pathology in autism identifies common genes and pathways affected across neocortical regions publication-title: Molecular Neurobiology – volume: 86 start-page: 6 issue: 1 year: 2010 end-page: 22 article-title: Prioritizing GWAS results: A review of statistical methods and recommendations for their application publication-title: American Journal of Human Genetics – volume: 4 issue: 2 year: 2003 article-title: An automated method for finding molecular complexes in large protein interaction networks publication-title: BMC Bioinformatics – volume: 33 start-page: 108263 year: 2020 article-title: Single‐cell transcriptomics of parkinson’s disease human in vitro models reveals dopamine neuron‐specific stress responses publication-title: Cell Reports – volume: 26 start-page: 2415 issue: 6 year: 2020 end-page: 2428 article-title: ERICH3: vesicular association and antidepressant treatment response publication-title: Molecular Psychiatry – volume: 22 start-page: e51524 year: 2021 article-title: Paternal age affects offspring via an epigenetic mechanism involving REST/NRSF publication-title: EMBO Reports – volume: 13 start-page: 352 year: 2020 end-page: 368 article-title: Integrated transcriptome analyses revealed key target genes in mouse models of autism publication-title: Autism Research – volume: 48 start-page: 183 year: 2018 end-page: 192 article-title: CNV biology in neurodevelopmental disorders publication-title: Current Opinion in Neurobiology – volume: 511 start-page: 421 year: 2014 end-page: 427 article-title: Biological insights from 108 schizophrenia‐associated genetic loci publication-title: Nature – volume: 11 start-page: 1 year: 2020 end-page: 15 article-title: Emerging proteomic approaches to identify the underlying pathophysiology of neurodevelopmental and neurodegenerative disorders publication-title: Molecular Autism – volume: 28 start-page: R219 year: 2019 end-page: R225 article-title: Synapse diversity and synaptome architecture in human genetic disorders publication-title: Human Molecular Genetics – volume: 370 start-page: eaaz6063 issue: 6520 year: 2020 article-title: In vivo Perturb‐Seq reveals neuronal and glial abnormalities associated with autism risk genes publication-title: Science – volume: 10 start-page: 1 issue: 1 year: 2019 end-page: 10 article-title: Metascape provides a biologist‐oriented resource for the analysis of systems‐level datasets publication-title: Nature Communications – volume: 180 start-page: 568 year: 2020 end-page: 584 article-title: Large‐scale exome sequencing study implicates both developmental and functional changes in the neurobiology of autism publication-title: Cell – volume: 540 start-page: 423 year: 2016 end-page: 427 article-title: Genome‐wide changes in lncRNA, splicing, and regional gene expression patterns in autism publication-title: Nature – volume: 12 start-page: 315 year: 2011 end-page: 323 article-title: Social responsiveness scale‐aided analysis of the clinical impact of copy number variations in autism publication-title: Neurogenetics – volume: 11 start-page: 1 year: 2020 end-page: 14 article-title: Integrative genomics identifies a convergent molecular subtype that links epigenomic with transcriptomic differences in autism publication-title: Nature Communications – volume: 369 start-page: eaaz8627 issue: 6510 year: 2020 article-title: Looking at neurodevelopment through a big data lens publication-title: Science – volume: 166 start-page: 540 year: 2009 end-page: 556 article-title: Genomewide association studies: History, rationale, and prospects for psychiatric disorders publication-title: American Journal of Psychiatry – volume: 24 start-page: 276 year: 2021 end-page: 287 article-title: Molecular characterization of selectively vulnerable neurons in Alzheimer’s disease publication-title: Nature Neuroscience – volume: 47 start-page: D529 year: 2019 end-page: D541 article-title: The BioGRID interaction database: 2019 update publication-title: Nucleic Acids Research – volume: 47 start-page: D607 year: 2019 end-page: D613 article-title: STRING v11: Protein‐protein association networks with increased coverage, supporting functional discovery in genome‐wide experimental datasets publication-title: Nucleic Acids Research – volume: 10 start-page: 1 year: 2019 end-page: 14 article-title: Small non‐coding RNAs: New class of biomarkers and potential therapeutic targets in neurodegenerative disease publication-title: Frontiers in Genetics – volume: 101 start-page: 1448 year: 2007 end-page: 1462 article-title: The synaptic vesicle proteome publication-title: Journal of Neurochemistry – year: 2021 article-title: Similarities and dissimilarities between psychiatric cluster disorders publication-title: Molecular Psychiatry – volume: 23 start-page: 771 year: 2020 end-page: 781 article-title: Single‐nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons publication-title: Nature Neuroscience – volume: 6 start-page: 1 year: 2015 end-page: 8 article-title: Behavioral microbiomics: A multi‐dimensional approach to microbial influence on behavior publication-title: Frontiers in Microbiology – ident: e_1_2_11_30_1 doi: 10.1038/s41593-020-00764-7 – ident: e_1_2_11_24_1 doi: 10.1126/science.aaz6063 – ident: e_1_2_11_29_1 doi: 10.1101/gr.262295.120 – ident: e_1_2_11_18_1 doi: 10.1016/j.biopsych.2019.07.029 – ident: e_1_2_11_46_1 doi: 10.1093/nar/gky1079 – ident: e_1_2_11_22_1 doi: 10.1038/s41398-019-0390-0 – ident: e_1_2_11_28_1 doi: 10.1093/nar/gks808 – ident: e_1_2_11_14_1 doi: 10.1002/aur.2240 – ident: e_1_2_11_15_1 doi: 10.1371/journal.pone.0144172 – ident: e_1_2_11_58_1 doi: 10.1016/j.cell.2016.10.031 – ident: e_1_2_11_11_1 doi: 10.1038/nature13772 – ident: e_1_2_11_45_1 doi: 10.1038/s41398-019-0584-5 – ident: e_1_2_11_56_1 doi: 10.1038/s41380-021-01030-3 – ident: e_1_2_11_12_1 doi: 10.1093/bfgp/elab024 – ident: e_1_2_11_37_1 doi: 10.1073/pnas.1102233108 – ident: e_1_2_11_38_1 doi: 10.1021/pr300910n – ident: e_1_2_11_43_1 doi: 10.1111/pcn.12524 – ident: e_1_2_11_19_1 doi: 10.1093/hmg/ddz178 – ident: e_1_2_11_67_1 doi: 10.3389/fgene.2019.00364 – ident: e_1_2_11_70_1 doi: 10.3389/fmicb.2015.01359 – ident: e_1_2_11_63_1 doi: 10.1038/nmeth.4077 – ident: e_1_2_11_47_1 doi: 10.1038/nrg3934 – ident: e_1_2_11_10_1 doi: 10.1126/science.aba3163 – ident: e_1_2_11_17_1 doi: 10.1126/science.aat8127 – ident: e_1_2_11_25_1 doi: 10.1093/jb/mvy022 – ident: e_1_2_11_59_1 doi: 10.1093/nar/gky1131 – ident: e_1_2_11_54_1 doi: 10.1016/j.cell.2019.12.036 – ident: e_1_2_11_26_1 doi: 10.1038/nrg.2018.4 – ident: e_1_2_11_8_1 doi: 10.1016/j.ajhg.2009.11.017 – ident: e_1_2_11_68_1 doi: 10.1002/ajmg.b.32503 – ident: e_1_2_11_33_1 doi: 10.1016/j.cell.2012.02.039 – ident: e_1_2_11_61_1 doi: 10.1016/j.neubiorev.2019.04.012 – ident: e_1_2_11_9_1 doi: 10.1176/appi.ajp.2008.08091354 – ident: e_1_2_11_4_1 doi: 10.1016/j.neubiorev.2020.06.033 – ident: e_1_2_11_60_1 doi: 10.1016/j.conb.2017.12.004 – ident: e_1_2_11_73_1 doi: 10.15252/embr.202051524 – ident: e_1_2_11_34_1 doi: 10.1126/science.aav9776 – ident: e_1_2_11_31_1 doi: 10.1038/nmeth.4083 – ident: e_1_2_11_64_1 doi: 10.1007/s10048-011-0297-2 – ident: e_1_2_11_40_1 doi: 10.1186/s13229-020-00334-5 – ident: e_1_2_11_53_1 doi: 10.1038/nature13595 – ident: e_1_2_11_52_1 doi: 10.1016/j.gde.2021.02.014 – ident: e_1_2_11_21_1 doi: 10.1016/j.psychres.2020.112922 – ident: e_1_2_11_23_1 doi: 10.1038/s41593-020-0604-z – ident: e_1_2_11_20_1 doi: 10.1093/nar/gkx1013 – ident: e_1_2_11_55_1 doi: 10.1038/s41380-020-0844-z – ident: e_1_2_11_39_1 doi: 10.1001/jamapsychiatry.2017.4685 – ident: e_1_2_11_50_1 doi: 10.1038/s41576-018-0066-2 – ident: e_1_2_11_71_1 doi: 10.1038/s41380-020-00947-5 – ident: e_1_2_11_44_1 doi: 10.1016/j.neures.2021.03.005 – ident: e_1_2_11_69_1 doi: 10.1016/j.cell.2018.06.016 – ident: e_1_2_11_13_1 doi: 10.1038/npp.2017.115 – ident: e_1_2_11_48_1 doi: 10.1038/nature20612 – ident: e_1_2_11_66_1 doi: 10.1126/science.aav8130 – ident: e_1_2_11_49_1 doi: 10.1038/s41380-020-0807-4 – ident: e_1_2_11_27_1 doi: 10.1038/nature19357 – ident: e_1_2_11_35_1 doi: 10.1016/j.rasd.2013.09.006 – ident: e_1_2_11_36_1 doi: 10.1038/s41593-020-00787-0 – ident: e_1_2_11_5_1 doi: 10.1126/science.aaz8627 – ident: e_1_2_11_32_1 doi: 10.1038/s41380-020-00940-y – volume: 4 issue: 2 year: 2003 ident: e_1_2_11_3_1 article-title: An automated method for finding molecular complexes in large protein interaction networks publication-title: BMC Bioinformatics contributor: fullname: Bader G. D. – ident: e_1_2_11_51_1 doi: 10.1038/s41467-020-18526-1 – ident: e_1_2_11_62_1 doi: 10.1016/j.schres.2019.08.032 – ident: e_1_2_11_2_1 doi: 10.1186/2040-2392-4-36 – ident: e_1_2_11_42_1 doi: 10.1016/j.neuron.2015.07.033 – ident: e_1_2_11_72_1 doi: 10.1016/j.cell.2012.10.043 – ident: e_1_2_11_57_1 doi: 10.1038/s41580-020-00315-9 – ident: e_1_2_11_6_1 doi: 10.1093/nar/gky1120 – ident: e_1_2_11_65_1 doi: 10.1007/s12035-020-01879-5 – ident: e_1_2_11_74_1 doi: 10.1038/s41467-019-10897-4 – ident: e_1_2_11_7_1 doi: 10.1111/j.1471-4159.2007.04453.x – ident: e_1_2_11_41_1 doi: 10.1038/s41593-020-0621-y – ident: e_1_2_11_16_1 doi: 10.1016/j.celrep.2020.108263 |
SSID | ssj0016461 |
Score | 2.4760294 |
SecondaryResourceType | review_article |
Snippet | The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to explain... Abstract The genetic and phenotypic heterogeneity of autism spectrum disorder (ASD) impedes the unification of multiple biological hypotheses in an attempt to... |
SourceID | proquest crossref pubmed wiley |
SourceType | Aggregation Database Index Database Publisher |
StartPage | 647 |
SubjectTerms | Animals Autism autism spectrum disorder Autism Spectrum Disorder - genetics Bioinformatics Chromosomes Copy number Disorders enrichment analysis Etiology gene ontology Genes Genetic Predisposition to Disease Genomics Heterogeneity Humans Mental disorders Metabolic Networks and Pathways - genetics neurodevelopmental disorder Neurodevelopmental disorders Proteins protein–protein interaction network Schizophrenia Schizophrenia - genetics Social factors |
Title | Molecular signatures from multi‐omics of autism spectrum disorders and schizophrenia |
URI | https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fjnc.15514 https://www.ncbi.nlm.nih.gov/pubmed/34537986 https://www.proquest.com/docview/2596081680/abstract/ https://search.proquest.com/docview/2574736999 |
Volume | 159 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LS8NAEB6kF734aH3EF6uIeElpsps0wVMpaim0B1HpQQjZ10WairEHPfkT_I3-Emc3D6oiiJeQkA2b7MzsfrOZ-QbgJKA60EZ5fc6Vy6T0XPRsuyYLhAmTEiy1yUYejcPBLRtOgskSnFe5MAU_RL3hZizDztfGwFOeLxo52o9d73H-NUR6BhBd19RRhjbLq5nCUTNLViEbxVM9-XUt-gEwv-JVu-BcrsF99apFnMlDe_7M2-L1G4vjP79lHVZLIEp6heZswJLKmtDqZeiET1_IKbGhoXbPvQnL_aosXAvuRlVBXWJiPywvaE5MlgqxwYkfb-8m0TknM01S1Op8Smw259N8SmRJ9ZmTNJMkX4z324Tby4ub_sAtizO4gnkxc7uUGi43QQUTiqIbxCOfxwGXPtehjDq-jnQaeFQJHVG8ZAh9IqF8qlAXhJfSLWhks0ztAJGIM2RHoHOEWCHtdmKJPmMc60jpwI99z4HjSkzJY8HBkdS-SyYSO3IO7FcCTEozzBP07UJbWaTjwFF9GwfM_BVJMzWbmzboUdEQgbID24Xg614oC2g3jkIHzqz4fu8-GY779mT37033YMU3ETI2s3EfGigJdYAQ55kfWl3G49XE-wT0zPe9 |
link.rule.ids | 315,786,790,1382,27957,27958,46329,46753 |
linkProvider | Wiley-Blackwell |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT4NAEJ5UPdSLj9YHWnU1xnihKSxQSLw0jabWtgfTGi-GwD4uptSIPejJn-Bv9Jc4uzziIybGG4QlCzsz7PctM98CHLtUulI5rx3HwnQ4t0xktm1VBeIwVRLMpapGHo683sTp37q3FTgramEyfYhywU1Fhv5eqwBXC9KfoxwDSE_4C7CE4e5qQnVdikcp4Syr1ApH38x1hXQeT3Hr19noB8T8ilj1lHOxCnfFw2aZJvfN-VPcZC_fdBz_-zZrsJJjUdLJnGcdKiKpQb2TIA-fPpMTorND9bJ7DardYme4OtwMiz11iUr_0NKgKVGFKkTnJ76_vqla55TMJInQsdMp0QWdj_Mp4bnaZ0qihJP0c8rfBkwuzsfdnpnvz2Ayxwocs02pknNjlDlMUGRCsW_HgRtzO5Ye91u29GXkWlQw6VM8dRD9-EzYVKA7MCuim7CYzBKxDYQj1OAthvwI4ULUbgUcaWMQSF9I1w5sy4Cjwk7hQybDEZb0JWGhHjkDGoUFwzwS0xDpnac3F2kZcFhexgFTP0aiRMzmqg2SKuohVjZgK7N82Qt1XNoOfM-AU22_37sP-6OuPtj5e9MDqPbGw0E4uBxd7cKyrRJmdKFjAxbRKmIPEc9TvK8d-wOkofru |
linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3JSsRAEC1cQL24L3FtRcRLhkl3J5PgSUYH10FExYMQkl4uMhkxzkFPfoLf6JdY3VlwQRBvCenQSVdVul6n3muAbZ9pXxvnpWmqXC6l5yKybRkWCBeGEiy1YSOfd4Oja35y698OwV7FhSn0IeoFNxMZ9nttAvxB6s9BjvFj5_thGOUBo8alDy5r7Sijm-XVUuHomqWskC3jqW79Ohn9yDC_Jqx2xulMwV31rEWhyX1j8JQ2xMs3Gcd_vsw0TJaZKNkvXGcGhlQ2C3P7GaLw3jPZIbY21C66z8J4u9oXbg5uzqsddYkp_rDCoDkxNBViqxPfX98M0zknfU0SdOu8Ryyd83HQI7LU-sxJkkmSfy74m4frzuFV-8gtd2dwBfci7rYYM2JuggkuFEMclIY0jfxU0lQHMmxSHerE95gSOmR4yjH3CYWiTKEzCC9hCzCS9TO1BERioiGbAtERJgtJqxlJBI1RpEOlfRpRz4GtykzxQyHCEdfgJROxHTkHVisDxmUc5jGCu8BuLdJ0YLO-jANmfoskmeoPTBuEVCzATNmBxcLwdS-M-6wVhYEDu9Z8v3cfn3Tb9mD57003YOzioBOfHXdPV2CCmmoZy3JchRE0ilrDdOcpXbdu_QG9Ovmd |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Molecular+signatures+from+multi%E2%80%90omics+of+autism+spectrum+disorders+and+schizophrenia&rft.jtitle=Journal+of+neurochemistry&rft.au=Nomura%2C+Jun&rft.au=Mardo%2C+Matthew&rft.au=Takumi%2C+Toru&rft.date=2021-11-01&rft.issn=0022-3042&rft.eissn=1471-4159&rft.volume=159&rft.issue=4&rft.spage=647&rft.epage=659&rft_id=info:doi/10.1111%2Fjnc.15514&rft.externalDBID=10.1111%252Fjnc.15514&rft.externalDocID=JNC15514 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0022-3042&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0022-3042&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0022-3042&client=summon |