An introduction to arrays
DNA microarrays are a new technology that allows the analysis of large numbers of genes at a high resolution by the hybridization of labelled DNA, which may be reverse‐transcribed from mRNA, to a substrate containing thousands of spotted cDNAs or oligonucleotides. The amount of hybridized target is...
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Published in | The Journal of pathology Vol. 195; no. 1; pp. 3 - 6 |
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Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
Chichester, UK
John Wiley & Sons, Ltd
01.09.2001
Wiley |
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Abstract | DNA microarrays are a new technology that allows the analysis of large numbers of genes at a high resolution by the hybridization of labelled DNA, which may be reverse‐transcribed from mRNA, to a substrate containing thousands of spotted cDNAs or oligonucleotides. The amount of hybridized target is analysed, giving information on gene expression, polymorphisms or mutations present and allowing the gene profiling of different subtypes of disease. This technique has massive implications for the further understanding of the complicated genetic alterations involved in tumourigenesis and other disease processes and also for the generation of accurate prognostic information and optimization of treatment in these situations. Copyright © 2001 John Wiley & Sons, Ltd. |
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AbstractList | DNA microarrays are a new technology that allows the analysis of large numbers of genes at a high resolution by the hybridization of labelled DNA, which may be reverse-transcribed from mRNA, to a substrate containing thousands of spotted cDNAs or oligonucleotides. The amount of hybridized target is analysed, giving information on gene expression, polymorphisms or mutations present and allowing the gene profiling of different subtypes of disease. This technique has massive implications for the further understanding of the complicated genetic alterations involved in tumourigenesis and other disease processes and also for the generation of accurate prognostic information and optimization of treatment in these situations. DNA microarrays are a new technology that allows the analysis of large numbers of genes at a high resolution by the hybridization of labelled DNA, which may be reverse‐transcribed from mRNA, to a substrate containing thousands of spotted cDNAs or oligonucleotides. The amount of hybridized target is analysed, giving information on gene expression, polymorphisms or mutations present and allowing the gene profiling of different subtypes of disease. This technique has massive implications for the further understanding of the complicated genetic alterations involved in tumourigenesis and other disease processes and also for the generation of accurate prognostic information and optimization of treatment in these situations. Copyright © 2001 John Wiley & Sons, Ltd. DNA microarrays are a new technology that allows the analysis of large numbers of genes at a high resolution by the hybridization of labelled DNA, which may be reverse-transcribed from mRNA, to a substrate containing thousands of spotted cDNAs or oligonucleotides. The amount of hybridized target is analysed, giving information on gene expression, polymorphisms or mutations present and allowing the gene profiling of different subtypes of disease. This technique has massive implications for the further understanding of the complicated genetic alterations involved in tumourigenesis and other disease processes and also for the generation of accurate prognostic information and optimization of treatment in these situations.DNA microarrays are a new technology that allows the analysis of large numbers of genes at a high resolution by the hybridization of labelled DNA, which may be reverse-transcribed from mRNA, to a substrate containing thousands of spotted cDNAs or oligonucleotides. The amount of hybridized target is analysed, giving information on gene expression, polymorphisms or mutations present and allowing the gene profiling of different subtypes of disease. This technique has massive implications for the further understanding of the complicated genetic alterations involved in tumourigenesis and other disease processes and also for the generation of accurate prognostic information and optimization of treatment in these situations. |
Author | Smith, Victoria Maughan, Nicola J. Lewis, Fraser A. |
Author_xml | – sequence: 1 givenname: Nicola J. surname: Maughan fullname: Maughan, Nicola J. organization: Histopathology, The Leeds Teaching Hospitals NHS Trust, Leeds, UK – sequence: 2 givenname: Fraser A. surname: Lewis fullname: Lewis, Fraser A. organization: Histopathology, The Leeds Teaching Hospitals NHS Trust, Leeds, UK – sequence: 3 givenname: Victoria surname: Smith fullname: Smith, Victoria organization: Genentech Inc., South San Francisco, USA |
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Keywords | Human DNA chip Cytogenetics Technique Molecular biology Gene expression Bibliographic review |
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References_xml | – reference: Berns A. Gene expression in diagnosis. Nature 2000; 403: 491-492. – reference: Heiskanen MA, Bittner ML, Chen Y, et al. Detection of gene amplification by genomic hybridization to cDNA microarrays. Cancer Res 2000; 60: 799-802. – reference: Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995; 270: 467-470. – reference: Hacia JG. Resequencing and mutational analysis using oligonucleotide microarrays. Nature Genet 1999; 21 (Suppl): 42-47. – reference: Lockhart DJ, Winzeler EA. Genomics, gene expression and DNA arrays. Nature 2000; 405: 827-836. – reference: Lewis F, Maughan NJ, Smith V, Hillan K, Quirke P. Unlocking the archive - gene expression in paraffin-embedded tissue. J Pathol 2001; 195: 66-71. – reference: Southern E, Mir K, Shchepinov M. Molecular interactions on microarrays. Nature Genet 1999; 21 (Suppl): 5-9. – reference: Cheung VG, Morley M, Aguilar F, et al. Making and reading microarrays. Nature Genet 1999; 21 (Suppl): 15-19. – reference: Duggan DJ, Bittner M, Chen Y, et al. Expression profiling using cDNA microarrays. Nature Genet 1999; 21 (Suppl): 10-14. – reference: Marshall A, Hodgson J. DNA chips - an array of possibilities. Nature Biotechnol 1998; 16: 27-31. – reference: Marx J. DNA arrays reveal cancer in its many forms. Science 2000; 289: 1670-1672. – reference: Friend SH. DNA microarrays and expression profiling in clinical practice. Br Med J 1999; 319: 1306-1307. – reference: Pollack J, Perou CM, Alizadeh AA, et al. Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nature Genet 1999; 23: 41-46. – reference: DeRisij, Penland L, Brown PO, et al. Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genet 1996; 14: 457-460. – reference: Schena M, Shalon D, Heller R, et al. 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Nature 2000; 403: 503-511. – volume: 403 start-page: 491 year: 2000 end-page: 492 article-title: Gene expression in diagnosis publication-title: Nature – volume: 195 start-page: 66 year: 2001 end-page: 71 article-title: Unlocking the archive – gene expression in paraffin‐embedded tissue publication-title: J Pathol – volume: 21 start-page: 42 issue: Suppl year: 1999 end-page: 47 article-title: Resequencing and mutational analysis using oligonucleotide microarrays publication-title: Nature Genet – volume: 21 start-page: 15 issue: Suppl year: 1999 end-page: 19 article-title: Making and reading microarrays publication-title: Nature Genet – volume: 16 start-page: 27 year: 1998 end-page: 31 article-title: DNA chips – an array of possibilities publication-title: Nature Biotechnol – volume: 23 start-page: 41 year: 1999 end-page: 46 article-title: Genome‐wide analysis of DNA copy‐number changes using cDNA microarrays publication-title: Nature Genet – volume: 319 start-page: 1306 year: 1999 end-page: 1307 article-title: DNA microarrays and expression profiling in clinical practice publication-title: Br Med J – volume: 93 start-page: 10614 year: 1996 end-page: 10619 article-title: Parallel human genome analysis: microarray‐based expression monitoring of 1000 genes publication-title: Proc Natl Acad Sci U S A – volume: 405 start-page: 827 year: 2000 end-page: 836 article-title: Genomics, gene expression and DNA arrays publication-title: Nature – volume: 21 start-page: 10 issue: Suppl year: 1999 end-page: 14 article-title: Expression profiling using cDNA microarrays publication-title: Nature Genet – volume: 14 start-page: 457 year: 1996 end-page: 460 article-title: Use of a cDNA microarray to analyse gene expression patterns in human cancer publication-title: Nature Genet – volume: 403 start-page: 503 year: 2000 end-page: 511 article-title: Distinct types of diffuse large B‐cell lymphoma identified by gene expression profiling publication-title: Nature – volume: 270 start-page: 467 year: 1995 end-page: 470 article-title: Quantitative monitoring of gene expression patterns with a complementary DNA microarray publication-title: Science – volume: 289 start-page: 1670 year: 2000 end-page: 1672 article-title: DNA arrays reveal cancer in its many forms publication-title: Science – volume: 60 start-page: 799 year: 2000 end-page: 802 article-title: Detection of gene amplification by genomic hybridization to cDNA microarrays publication-title: Cancer Res – volume: 21 start-page: 5 issue: Suppl year: 1999 end-page: 9 article-title: Molecular interactions on microarrays publication-title: Nature Genet – volume: 21 start-page: 5 year: 1999 ident: 10.1002/path.924-BIB2 publication-title: Nature Genet doi: 10.1038/4429 – volume: 21 start-page: 42 year: 1999 ident: 10.1002/path.924-BIB5 publication-title: Nature Genet doi: 10.1038/4469 – volume: 289 start-page: 1670 year: 2000 ident: 10.1002/path.924-BIB6 publication-title: Science doi: 10.1126/science.289.5485.1670 – volume: 60 start-page: 799 year: 2000 ident: 10.1002/path.924-BIB10 publication-title: Cancer Res – volume: 403 start-page: 503 year: 2000 ident: 10.1002/path.924-BIB14 publication-title: Nature doi: 10.1038/35000501 – volume: 21 start-page: 15 year: 1999 ident: 10.1002/path.924-BIB7 publication-title: Nature Genet doi: 10.1038/4439 – volume: 23 start-page: 41 year: 1999 ident: 10.1002/path.924-BIB11 publication-title: Nature Genet doi: 10.1038/14385 – volume: 270 start-page: 467 year: 1995 ident: 10.1002/path.924-BIB4 publication-title: Science doi: 10.1126/science.270.5235.467 – volume: 21 start-page: 10 year: 1999 ident: 10.1002/path.924-BIB8 publication-title: Nature Genet doi: 10.1038/4434 – volume: 195 start-page: 66 year: 2001 ident: 10.1002/path.924-BIB15 publication-title: J Pathol doi: 10.1002/1096-9896(200109)195:1<66::AID-PATH921>3.0.CO;2-F – volume: 93 start-page: 10614 year: 1996 ident: 10.1002/path.924-BIB3 publication-title: Proc Natl Acad Sci U S A doi: 10.1073/pnas.93.20.10614 – volume: 14 start-page: 457 year: 1996 ident: 10.1002/path.924-BIB12 publication-title: Nature Genet doi: 10.1038/ng1296-457 – volume: 403 start-page: 491 year: 2000 ident: 10.1002/path.924-BIB13 publication-title: Nature doi: 10.1038/35000684 – volume: 319 start-page: 1306 year: 1999 ident: 10.1002/path.924-BIB16 publication-title: Br Med J doi: 10.1136/bmj.319.7220.1306 – volume: 405 start-page: 827 year: 2000 ident: 10.1002/path.924-BIB1 publication-title: Nature doi: 10.1038/35015701 – volume: 16 start-page: 27 year: 1998 ident: 10.1002/path.924-BIB9 publication-title: Nature Biotechnol doi: 10.1038/nbt0198-27 |
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SubjectTerms | Biological and medical sciences Computational Biology DNA Fingerprinting DNA microarray gene expression profiling Humans Investigative techniques, diagnostic techniques (general aspects) Medical sciences Miscellaneous. Technology Mutation Neoplasms - classification Neoplasms - genetics Oligonucleotide Array Sequence Analysis - methods Pathology. Cytology. Biochemistry. Spectrometry. Miscellaneous investigative techniques Polymorphism, Genetic tumourigenesis |
Title | An introduction to arrays |
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